morexGenes - Barley RNA-seq Database

Contig contig_1593759

Source Contig contig_1593759

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1593759 (1790 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1593759

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_21237	2	1130 bp	MLOC_21237.2	Available	Available	LOC_Os02g52900.2, FRAME:-2, EVALUE:4e-29, 13102.m06031 protein glutaredoxin 2, putative, expressed
MLOC_21236	1	511 bp	AK375720	Not available	Available	None

CDS Structure of MLOC_21237

CDS Structure of MLOC_21236

Contig Sequence (1790 bp)

>contig_1593759 1790 assembly3_WGSMorex_rbca.fasta
TAGTTATAAAATAAAGAATGCATTCACCTAACCCTTTAAAACATTTTNNAAAAGAGGCTG
CATGATATGAACAAAGGAATTTGGACACATTCATGAAGGTATACTGGTCTGATTATTATT
TTTATGTTAAATTTTCTCCAGGTACTTGTACAGTCAAGCAAGATTGAAGTTCCAATTGGA
ATTCTACAAAAGGAGGCCTCTCAGCCTCGAGCAGATTAGAATTTGCATGTTAAAGACTAT
TTTGCAGCTTATATCACAGTGCAACACTTAGATAACATATCGCGAGTTGCACCAAGGTTG
GGAATTTGGGATGTAGCAATTCTATGCTTAAACTAATGTCCTATTTTGTACTCACATGAA
AGCCAGATAAATCCCAAGGTCCATGTATAGTAGAATTAGCAGGTTACAGTTACAAAGGTG
GCTGGCCAATGTTCCTAAAGATATGTTCTTAGTTGTTTATCTGCTCAGATAACCATTTTT
TCCCCAGGCAGCTCATGCATTTGTATACGCCAGACATTGCTCTTATCTCCAAGAGCCCCT
TGGACAAATGCTCTCATCTCCAGACGATTCAGATTTACTAGCCTGAATCTTGCTTATGAG
TCAGATGTTCCATAAATGCTCCTTGCATAAAAGTCTTTCACTTGTTTACAAGAGAAAACC
CCTCCCCCCGACCCCCACCACACACACACACACACACAGAAAAAAAACATTTTATATCTC
TCTGAGAACGAAAACAAGTATTTTGGATGTCTCTCTATATGAATTCGATATTAAGAAGCC
AAGCGTAAACCAAGCAAAATGTACAACAACAAAAATTAAGCAATTGAAAATCATGGGTTG
CGACTTACAACCAAGGAAAATTACACCAACCGTATCACCTATTGGCACTCTTACAGCTCA
ATCCTAAATGCAAAGCTGACGATTGAACTTTTGAAGTACAATTGTATCCTTACTGATCAA
AGACGCTGGATACTTTCTTCTGTATGAGCTCCACAGTTAGCCGGGGAGACAGCCTCGGAA
GTATTTCCTGTAATATGAGTAGTCACATTTACATCAGTTGATAATATTCCAAACAATCAA
TCCTATAGAGTAATAAAACACCGAGGGGGTAACTCTCACAAATAATGTATCATCACAATG
ATCGAAAGATCTATCAAATACCAATAAGGAATGGTCTTTAGGCGAGCTGGAGTAAGAGAG
AATTCCTTGTCTTCACCATCGGATTATCTTTTCAAAGAATGCTGATTTGTCTGGAGTGAT
CTTATTATAAGCGCGTGCAGGTCAAGGCGCAAATGTGTGGTATACGGTATACCTCTATCA
AGTTTGCGCTAGCCAAACATATCGTGATATGTTAATAATTCTTCATCGAACAACGAAGCT
ATGATTTTATTATCTGTGGCAAGTGTACCAACTACAGTGAACCAGCGAAGCATAACCTCT
GCCTGCTTTCGTTCATCGAACTGAGACATTTATACAGCCAGATGGATACTGTATGCTGGT
ATCATAATTTGGCTATGTGCAAGCTTAAATTGCGTAGCTGAAAACATGGCAAAAGAAAGG
GTGAATCGCGAGCGGATNNNTGGATACCTCGGTGCCGTCGGGGAGCACCTTAGCCAGCAC
CGGGATCTCGTACTGGTACAGCCGCTCCCACTCCGGGTTCGTCGTGATGTCCCTCTCCTG
ATCGAATTAGTCCAGCACCCCAAAAGTAAGCATCGGCATTGTCAGCGCGAGAAAGAGATT
ACGGACTGGTTCTGGGTTTGCTCGCCTGGAGCTCGAGGGAGGCGAGGGAG