Contig Data
morexGenes
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Map Locations of contig_1593340 (5286 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1593340

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_21155 5 2007 bp MLOC_21155.1 Available Available LOC_Os01g47280.1, FRAME:-2, EVALUE:2e-43, 13101.m04869 protein expressed protein
MLOC_21154 1 3079 bp None Available Available None





CDS Structure of MLOC_21155






CDS Structure of MLOC_21154






Contig Sequence (5286 bp)

>contig_1593340 5286 assembly3_WGSMorex_rbca.fasta
GTGATTGCTTGGTCCTCGGTTGATTGACGGTATGGGTCGGATTTATTCCAACAATTCCAC
ATATTATTTTTTTAGATAAACAGCGAGGCTCTTCCGAGCTCCATTACTCAGATGATGCCA
AGTCTATACATCAGCTCTGTGAGGAGCAATTCCAGAAACATAATTAACAAGAGTAATCCC
ACATATGAATCAGAACTTTGAACTTTTCCCGGAATATATACAGGGAGGGGATTCCCAAAT
GGCAAAATCTAGACCTCCAAGGCACAAATTATGTACAGCTCATGAGTACAAATCGAGCTC
CCCAAACCCCCATAGACACAGAAGAAAGAATGAACACTTGACAAGGCAGGAGCCAACCAT
TGTGCATGGAGCTGTTCTAGTTGTGGGCACGGCGAGCAAGACGCCATGCTGCCGCTTCTC
CTGATCATCCCCAACAAATTTTGCGTTGGATCATCTGCTGGAAATCGGCGAGCCATGGAA
AGCATTTCTCGGTGCTCTGCTCCCCCGAAGCTTTTGGCCGGAGAAATTCGAATGCCGGCC
AGCCAGCACGATGGAATTCTGTTGGTTTGTCGCCGCCGCGGCGACATGGACAGACGGTAC
GGAAAAAGCATCGCCGGTGCGGACGGACGGTGTCGGTGCGGTGGCCATCTCACACGTCGC
TTTCGCAGCCGTCGCCGTCGGCGTTGCGGCCGGCCCTCGGAGGCGGGTTCACAGAGAAGG
ACAAGCGGCCGAACCCCCACTGCCCCACCTGGTACATCTCCAGCCACACCCTTTCCTCCT
CGCTGGCGTCCGCGCCCTGACCCTGACACGCCGCCGTCGCCACGTCGTCGCCGCCTTTTG
ATGCGGCCTCGCCAGGACCAGGCTCCCGGTGGCCGCCCCCGCCCGCACACTTGGGGCTGG
GGCTAGGGCGGCCGCCGGCAAGGTCCATGTCGCGCACGCGCTTCTTGTGCTGCAGCTTTC
CATGCCGCCGGCGCAGGCGCTGCACGCAGCGGCGGCCTAGGGCGAGCGGGGCCTTGACCA
GCGCCAGCCCCAGCAGGCTGACGACCGCGCAGGGGCAGCAGCCGAGCGCGATGCAGTCCG
CCAGCGACACCGCCACGCACGACCGGCACGACTGCGCGGTGCAGTCCGCGTGGTCGACCA
CGGCCGGCGCCGCGCCTTGGCCGCCGCCGTCGCCGCCGCGGTGGTGGAACCGTCCGTGGC
GCCGCGACATCGAGCCAGCGCAGCGCCCCCGGCCGCTCCCACCGGTCAACGCGTCATGCC
TGTCCATTGTGAGAAATGCGAGAGGTGAGCAAGGCGACGGCCGACATGGTCATGGCATCA
CGAGAGCATACTCATACTTGTGGCAGATTGAAACGGGTTTTTTTCTTTTCTTCGCGCGAG
AGCCGAGCGGTGGCGCTACGTTTGGTTGGGAAGAAATAAAAGGTGGATGGTTTTGAGCAC
AGTGGCGAGCAAAGTGGCAATGTAGACAGGCACATGCTGTAAATTAAGCCTCTGGACACG
GACACATGCCAGTAAATGCGCCCGCAAACGCCCCCCCGAAATAGAAAGCCAAAGTTTGGC
AGATGGCAAGGGCCCGTCAGCAAATGGCCTCGCTAAATATACAAATGGCCCCTAAACTAC
ATGATCAAGCAGCAACTACAACTACTACAAGCTACCAATAAACTGAATCCACCGCTCAAA
ATTAAAGAAATAAACATAAATCCCGGCAAGCAGGCAGTCGAGAAGTCGATCGGTGAGGAC
AGAAGAGAAGGGACGGGAGATACCTCCTAGTCTAGGCAAAAGCCAAGCAGTATACCAGAC
AAGTAGGCATACATGTACACACAGTACAGTACATATCCTACCTACAACTGCCTGGTGAGT
TTCAAAAAGAGGAGAATTGTGGTGGCGTGGCGTGGCTTTCGCTTTTGCGCGGGGAGGGAG
GTAGGAGTGCCTGCGGTGCGTGCGTGGAGTACATTCCGGTCTGGCTACTGTGCAGACACG
TCGGACGGGGTACAGCCGGAAACTGTAGCAGGCATCAGCGGCGGACGCGCCATGGATCTC
TTGCCCGATTCCTGCCTGCAGCTCCGCGTGTGTGTGGGCCGGCCTTTAGCTACGACTCTT
TACTCGGATGGCACAGATACCAGCCATTGAAAGGCATGGGGGGTCCCTGGACTTGGCTGC
TGCTGGACTGGATTGGATAGGCCTGCTTTGTTCGTGACAAGTACACCAGATGATGATAAA
GACGGGTCCAAATAATGCCCTAGCTTTTTTTTCTTACACACTTTGTTTCCTCCGTTTCAT
TATTGATGATTGGACGACGAGGCTGCTGAGCTGGAGGCAGTACCGCGTACTACGTGTCCT
GAGTGGCTTGCATGGATGGAACATGTCGGACCAGGAGGAATCTCGGTATCAATATCTGAT
ACACTATGTTGTGCTTTGTCTCCGCATGATTGAGCGCCCAAAACATCATCAACCAAGCGG
TAACAGCTTCCAAGTACACCTAAAGCGCTACAAGATGATACTACTATCATTATCATAAGT
ACCTCGTAGTACTCTGTGGCCCAACTGATGAGGGTCGCCATCAGCCGCACTGTGGTGCGC
ATCAGACGACGATTTAAATATGGTGCAGTGCAAAACCCTGATGTGTCCTTGTCGCCGAAT
TATTGCAGCTATGGTGATTATTGGCACGACCAAGTTTGCACGCTTCATTCATGTTTAATG
TACGTCCGGTCCGGTGGTTAAGCAAAAGCAACCTGAATTGTTCTATTTAATGACGTCGGT
TTAGTTTTTAGTACTAGCACAAACTGGCATGGCTTTGGTCCACCGGCCGCTCGTTGAGTT
TTTTTATTTTAGTTTGAAACAGTCAGTAGCTTTCTGTGTTGAAAGAAGCCGTCTCCATCA
TCAAAAACTCCAATCCTGTATATATATATACTACGACATACATGAGCGGTGACAGGTCTC
CTATTTTACTATTTAGCATTTGTTAGGACATAATCTACCAAAAAGGGTGGCATGATTTGG
AAGCGGCAAAAGCTTCGCCGTCCGAAAATTTCATAGCTGTGTCATCCGAAATTCTTGTGA
TCTCTTCTCAGCAATGGATTGGATATTTGGCACGTAGGAGTACGTGACAAGCTACTTGCG
CGTATCCTATTTTTATGGGTGTGGTTTGTCCGAAAGCAATGCACACGCACATCTATATAC
TACAACTATACTTGTATAGAGTGGTTTCTTTGGGAAAAGGCATTGTACTACTAAAGTTTC
ATTTCAGGAATTCTTAATGGTATGGGGTAGAGTATATCCGTGTATATGCGTTGGCCTACT
GCCGTCGTGAAAGAGAAGGAAAGATTCTGCTACGCGTTGGCGGCGTAGGAAATAGGCGAG
GCTATGCAAGCATGGCCAGTCCAAGCCAATCACCCGGGGAACTCAACCACTCCCGAGAGA
TGAACTCGACCATTCCCTAGAGATGGAGATGGAAAGATGACACAGATGCATCCATACCAT
ACGTACATAAACTCTTTCTTACTACCGACGAGTTTAACGCTCGCACCGTCGATCGCCGCA
TAGCTCGTGTCAGCACTACGGAGCCGAGGTTTCCTGACTCCTGTGCGTGCATGGGTGTGT
GCAGCAGCCCTGCCATCGTTTCAGAGCGGTGGCTAGATCTCCGAGGATATCACATTTGCC
GAGGCGATTGCATATTCTTTTTCTTGCGCGGCTGCGTGAAATGATGATAATAACAATGTG
CTCGGGCTAGCTACTCGACAAGCTCTACTCCTACTTCAGCTGGTACGTACTGCTGTACCC
CCTACTGGGCATTTAAGAGCTGCATGTGCGTCTCTCGCTTTGTTGCATGTGAAAATAGCA
GCAGTTACTCCATTACCCTTTGGAGTTTTTGGCAGCCATGGTGCTAGGAATATTACTGGT
CAAATCTGCCACGCCTCGTGCTTTCTCCCCCTAGGATGCCAACATATTTTCACCGCTCTG
AATTTACCACCATGCGATTCCAGTGAAAGACTCCAGCGCGGCTCAGCTTCGGCAAGAAAT
ACGCGTTTGAGCTACTCATACGATCCTATTATAGGAACAAGAACGAAGTGGGGTATCAAG
AAGAAGTAGCAAGAAGGCGCATGTGGTTCTGGCCGCGGCGATCGGCGGCGACTCGAAGCA
CCAAGTTCACGGCAAATAAGAATAAAAACGTTTTGAGCTTCATCCGATCGATCGAAGTAA
AGAGGTAGGGAGGAGCATCAGCCTTACCTGCGGTGGAGGGGAGGCGCGCCGTCGATCGTC
CGTGCCGACGTCCCTCGGATCAAAGACCCCACGCCGAGGCCATGGATGGGTCGACGACCA
CCGGAGACATGACGATGGATCCGATCAGAGCGACGGTGGGCGAGGAGGAGCTTCTCCGAC
GGGCTCGAGTTCGAGTTTGAGGCGGCGTGGGTTATTTTGAGCCGAGGTAGGGGAGGGGCG
ACAGCTCCCTTGCCCCGTGGCTCTGTTTCTTGGGGTGTTTTATATATAGCCAAGCCAACT
CACTGGGCGTGGGTGTGTCAAAGCTGCTCTCGCGTCGAAAAATGTTTGGGAAGAAAGCGA
TGGCGTTTTGCGGGCCACTTATCTCTCCATCGGAGTATTTTGAATCGTTTTCAAAATAAA
AACAGGAGGACGAATGCTGAATCGATGCACCAGCTGCAAGTGTTCTGCGTGCATAGGAAT
AGGACTGAAGCAGCACAACCGTGCAGGGTGGGTTATTAAGCATCTCAGCTTGGGCTTAAC
TAAATCGGTGCCAGATCTCGTTAAGCTTTGCCGATACCAGTCACCAACTACTACTCGTGG
CCAGGCACTGGGCCGAGAGAATCTGTGGTGCTGGAGGGTGCCATCTGAGTGATGGTAATT
CATTGTAGTACTACTACTATACCGAAGACACGGAGAATCTTGTTTGACCTCTCCCGTCGT
GACGGCCAGCGGCTTGGCTTTCCACTAGGCGCCGCATAGAGAACCTCCCTCTTTCCTCGC
CTTACTTTTACGCGAAATGAGCCATGTATCACTCGCGCGGTATCGTGTACGACAAACGAG
TCAATGTACTAACGGCAGCCCGAGGAAACTCCAAACTTGGCGGTTCTTTACTCTTTGCAT
GGTCAAATGGTCTTAGTCCCTCCGTCTCGTGAAGGAGCTAGGGCTGCTAGGATCGAAGGA
AAAGATGACTGAGGACGTAGCAAAGGCCCTTATTCGACGCTTCGATGAGCCTCTCTCGGA
CAAAGACATTGCGGTCATCGTCAAGCTCATCCGCCTCGACGGGGAGGCCCTGACGGTCAT
GGCTCG