morexGenes - Barley RNA-seq Database

Contig contig_1592793

Source Contig contig_1592793

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1592793 (4371 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1592793

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_21007	1	352 bp	None	Available	Available	None
MLOC_21008	1	580 bp	AK376303	Not available	Available	None

CDS Structure of MLOC_21007

CDS Structure of MLOC_21008

Contig Sequence (4371 bp)

>contig_1592793 4371 assembly3_WGSMorex_rbca.fasta
TAGCCTATGACATGATCGTAGCTAACACCCTCTTTAAAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGTCACATCTAGTGACTTTTAGTAGTGGTCAACACTATAGCCAGATTGATT
TTGTCCTGTAGAGAAGAGAAGGCAGTCATGCTTGCCTAGATTGTAAGGTGATTTCTTGAG
AGAGTGTTGTCCCTCAGCATAAGCTTGTGGTGGTTGACTTTCGCATTCGGATTTGTGTCG
CTGGAACGAAGTGGTGGGGGCTCAAGAGGGAGCAGCTCAGGCTTCCAAGGAGAGGGTCAT
TAAGGAGGGCCCTTGTGAGGAAGGATGTGATGCAAACAATATGTGGATGAAGATGACGAC
TTGCATTCGTAAGGTGGCTTCATAGAAGTTTGGAGTGGTCAGGGGAAGTAGAAGCGAAGC
TAAAGATACCTGGTGGTGGAACGATGATGTCTAGAAGGTTATTGAGGAGAAGGTCTGTTT
CAGATGCCTACACCTGGATAGAAGTATAGATAACATAGACAAGTACAAGGTGGCAAAGAA
GGTCACAAAGCGAGATGTGAGTAAAGCAAGTACTCCCACCGTCCCAAAATAAGTGACTCA
ACTTTGTACTAGGCTAGTACAAAGTTGAGTCACTTATTTTGGGACGGAGGGAGTACCAAG
GAAGGCGAAAGGGACATCTATAAAATGGCCAAAATCCGAGAGAGGAAGACGACGGATGTC
AACCAAGTCAAATGCATCAAGGACAGAGCAGATCAACTCCTGGTGAAGGACGAGGAGATT
AAGAATAGATGACGGGAATACTTTGACAAGTTGTTCAATGGAGAGAATGGGAGCTCTACT
ATTCAGCTGGACGACTCCTTTGATGATACCAACAGGCGTTTTGTGCGAATTCAGGAGTTT
GAGGACAGGGGGGCTTTAGAAAGACGAAAAGAAGCAAGGCTATGGGCCCGGATTGTATCC
CCATATTGAGGTGAGGAGAGCCCTTAGAGGCATAGCGATAGAATGGCTAACTAAGCTTTT
CAACCTCACTTTTCGAGCAAACAAGATGCCGGAAGAATGGAGGCTGCGTGTTGGCCGACT
AAAAGGCAACATGTTGAACAGTTAGGTGTGGCGGAGATGCGCNTGTTGAGATGGATGTGT
GGCCACACGAGAAAGGATCGGGTCTGGTATGATGATATACGCAATAGAGTTGGGGTAGCA
CCGACCAAAGAGAAGCTTGTCCAACATCGTCTGAGATGGTTTGGACATATACAACGCAGA
CCTTTAGAAGCTCCAGTGTATAGCGGATGGTTATAGCTCAAGAGAGGTCAGGGTAAATCA
AACTTGACATGGGAGGAGGCCGAAAAGAGAGATCTGAAGGACTGGAATATCACTAAAGAA
CTAGCCATGGACAGGGGCACGTGGAAGTTAGCTATCCACGTGCCAGAACCAGAACCAGAA
GCTTTCGAGATCTTATGGGTTTCAGCTCTAGCCCACCCCAACTTGTTTGGGACTAAAGGC
TTAGTTGTTGTTTGTTTGATTAAGGGTAAAGTAAGAACAAAATGACTTAAACTGCATTGG
CAATGTAAACTGACAAACATTCTGAGAAAAAATGGCAAGGCTAGAACATCTACTTTGAAT
TGGAGGGAGAATAATGAATAGGCCCACTGCATGAAAAATTCCCATGAAAATGAATGACAG
AATACGGAGTACGGACAAACCTCTGGTCCAAGAAAACGCTCATATCCAATGTCAATTGTG
TATGGAACCCCAGTCTTCGGTTTGATTGCAGACCATTGTTTGATATATTTACTAGGCTTG
CTGTCATGCTTCTTGAACTCCTGAAATTATACAATTCAACCACCTATCATACTTGTGAAC
AGATAAATCCACAAAGAAAAAGGAATATGGATAAATGAGTTGACATTGCAAAAGGCAAAG
TCCGAAAGGTAGGTATTAAGTCGCTATTACAGCAACACAAGCAAACATATGCAGCATGTA
GACCAGTTCCATAACAAAATAACAGTGATTTCTCAGCATTGCACAGAATAGGTTTTATAT
ATTTGACTTCAATGGAGAAACTTCAACTCTCAAATATTCCACTGAATAATGTGCTTGTGT
AGATCAATGGAAAATACAAGGACAAGAAAATAAAATATGAAGACATTGGTTCCAAGCAAC
ACAATACCTTGACAATGTCTGAAGGAGTATAGCAATATGTTTCTTTCACCCTACGAGCTA
TATCCAAAGCATCATCAGGTGGAAGAAGCTCGCCCCTTTCCTGCATAAGGCACAATGATA
CTAATCACCAACAGAATTTCATATTATGATACTGCACTTCATAAGCATAAAAGCAGCCAT
GTACGTGCAGAAATCTATCCCCTGTAATCACCAATGAATGTTGTTTCGGACATAGACGTA
GACTTTGATCATCAATTTATACAAAAATATGTTGCTTGAGATAAAAATAATTATGCAATA
CAAAAATGTATTCTCACAATGAATCTAGTAATATCAATTTCATGTTGCCAATGTAGGTAA
TATTTTCCATTGTAATGGTCAAACTTAACAATGTTTGACTGGCCCAAATCCTAAAACGAA
CTACATTTGTGATCAGAGTATCATGTTTCACTAGCTTCTACAGAATGGGCCACAACCAAA
TATTCAGGGCAAATGATGTGACACTAGTTCTGCAGTAAAATGGAGTTTCTCACCCAGATG
ACAACATTCCGTTTTTTCATTTTAAATTACATATTTTCATTCAATCTAAAGTTACAACTG
AGGTTAAGAGGCCACCCAAACATTATGGCAGCTGTTATGGACATTGATCCACAATGAGAT
AATTTGGGTATAGTCAAGGTCTGAAGATCGACGAGAGGGTCCTCTACTGTCCGGCAGCAG
GGCTCATCGCCTCATCCTGATGTGGAAGAGAAACTCTGAGGTTTATTTGAATTTCCGTTC
ATTGATTTGTTGTCTAAAAACAGGTAAATGCTAGTCATTTATATAAAACAACTAACTTGA
TCCACAAATCGGATCACAACAGAAACTCTTGACCAAACTGTCTTTCTAACTTAATTGGAT
TCCACTTAATTTAAAGGACAAATAGCATCCACCATGGACATTTCAACTCGTTCTACATTT
ATGCAAGTATAAGTCTATTATTGTTGCTGGGTCCGTATAAAGCCGCTGCACATACGACTC
AAAGCCGATAACAGCAACACTTGTGAATGCTAGTGCAGGTTTTGTTTTCTAGATTTGTGT
GATCCAGATAAAAAATTGCCATATTTCATCAGAGAACATGTTCACAGAATCAACTTCTTG
TGGATGATATATGGTCTGTGGGTATAATATGGGGGAGACTGGAACCTTAGGTATCCGTAC
AAAAGAAATGCAAACTCTCCAAGTTGATTAATCATGCAACCATACTGAGCAGTGCAAAAC
TAATGTCAGGATACCAAGCAATAACGCACAACAGATCTAGGGTTCACATATTAACATGAT
CACTTACCAGGAGGCTTCAGAATAGATATCTATGAAAGTAGAAACTATTTGGCTGAAGCA
TCATTTTGGCTTTGTTGACCGAATTGCAGTGTTATCCGATTATTACTATAATTGAGCTAT
CCAGATAAATATTCTAACATAACAAATATTTGCTGAAGTACCTAACAAATATATGATGGT
CTCTTGTTACTGCTAACACATTTCCTTTTTCGTGGATAATTCCGTGCCACCCAAACTTCA
GGAAAATTGCTATTCAATTGTTCTGGTTTAGTCGGTACTGCACAGACTTGCTTCTATTAA
TGTATTTGCAATATGCAAGTGCCGGATACAGAACCTATTCATGGACAACACATGGACGTC
GACACCCTAACGTAACCCCAGGAAAATGTGGGAAGAAAATTAAATACCTGTAAGAGCTGC
ATAACAAACTGAGTTACATCACTTCCGGAAAGAGGAAAAGACTTTATGCTACTCCCAATT
ACATAGCCGTTTACAACTGGCACGATATGTGGAGCTCCATCCCCAATGTCAACTACTACA
CCTGTCATATCAGACTGACAAAATATATTGGTCAAACTCACGAGAAGAGTTGTATGCTAC
CAGAACACTTGATCTTTAGATGAGTCTACTTTATCAATGATGATTACTCCTAGAGTTTAA
ATGAGCATTAAGTTTGATGTTTCGTGGCTGCATGCAGCATGCGTCTTCTATGGTACTCCC
TCCGTTCCTAAATNNAAGTCTTTCTAGAGATTTCACTATTTGACTACATACGGAGCAAGA
TAAATGAATCTACACTCTAATGTATGTCTATATACATCCGTATGTAGTTTCATAATGAAA
ACTCTTAAAAGACTTATATTTAGGAACGGAGGGAGTCGTATAACTTCGTCT