Map Locations of contig_1592559 (3528 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1592559

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_20963 2 942 bp MLOC_20963.2 Available Available LOC_Os01g55030.1, FRAME:-3, EVALUE:8e-65, 13101.m05788 protein DNA-binding protein-related, putative, expressed





CDS Structure of MLOC_20963






Contig Sequence (3528 bp)

>contig_1592559 3528 assembly3_WGSMorex_rbca.fasta
TATACGAAGTTATACGAGTTACATTGTGATGTATCGAACATCCATAACATTATGGTGTTG
ATCATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAATATCTATCACTCCACTCTGGAACATGTATGATTTTTTCCAGAATTTTTT
TAAGCTTAAAATATGATCTTTGATTTTTTTTTGAAATAAAGAGCTCCCCCGTCCTCCAAA
GCGCTGCACTATCAGCCCCTGTACACACGAGCAATTACCTAGTGCAAACAAACAAGATGA
ATGATTTTTAAGTCAAAGCTGGCATATTTTTAGTGATATATACCATATATACCACAAAAA
GGGCGTTTTCAAGTTTGCGAACATGTATTGGACGCAGTTAAACTGAGTTCGAGCTCAGAA
GAATAGTAAATTCATACAAAACAAAAAAAAAATCAGAAACACTCACAGAAGACGTGGTAA
AAAAAAAACCTTCCATGCCATTCCATGTTGAAACTTGCAAGCAATATGAAACTACTTTTC
ATGATCGATCAAATGATAAATTTTTTGTACTGTGGATATTGATTTAATTTTCTAAACAAT
AGGTTAAAAATGCACTCGTCTGACTTTCCAAAAAAAACAAATATACACCTTATATAATAG
AACGGGGGAATATATTAATGTCGGTTCCTTTAGGGGTCTTCCAGAATAAGTTGCTTAAGC
CGAGTCCAAAAATGGTACCAAAAGAACTGTATTTTTTGGATCTGTTGCAACTTGCAAGGC
ACAGGCACTTTGCTAGTTAGTAGAAAAATGTGTGGTTTCAAATTCACGTAATTATTTGGG
GCTGCAAATACAAGTACGGTTTTGATCACCGCACAACATCAATATGTTCTTGACAGTGTT
TAAAATAAAATTTAATGCAAACTGGATGGTGCATAATCCATTTAGGAGATCAAATTGTAT
ATTACTGCTCAGCATCACAATTGTTCTCAGAAACACAACTGCTGCAGCAACTAACAATCA
CTCATAGATAGAAATGCTTGATAAGAAGGAACTTGCAGTAGTTCGAGCGAACAATTCCAA
TATGAACTCAGAAGATCCATCTTTCACATTCTAGACAACTCAACAGGTAGATTTGACCAA
CAGGCTTTGGAAAGCACTTCTTCTGATTGACAGCAAGGTCGATGTGATTTTCACTCTTCA
ACATTGACAAGTTCATACTCCACAAGTGAAAGATTATTGTCCTCCTTTACACCAAAGCTT
GCTGGTTCAGTTACTTCAACACGGCCCCATTTGTCAACAGCAAGCCTCATTGACCCTTTG
AACATATCAATCTTTGCATTGCGGATAATGACAGTGTTGCCAGGCTTCAACACATCAACT
GTGAAAAGGTATATGATTGTTATATCGCCCAAGTAACAAATGTATATCAAACCAACCACG
TAATCATGCATTTATGATAGAGCATTTGTGCCCGAGCAAATGAGTTAAGGATCAACAAAT
TTCAGTAAAGCTTTAAAGGAATATATTATGTAAGGATTTAATTTTTCTTGTTCCTAAGCA
TACAAAGTAGATTTGTCATATGATCATTTAATTATGCATAATGCATCAACGCTTGTTGCC
ATAAGTAACAATATACAGAGTAATAAGCAGGAAAACATGATGCAGATAATACAAAATCAA
TATGATTAAAGCATAGTGTGAATCGATTTTACACTCTTTTGAACCATCATCTACCTTATA
ACCATATAATGTAATCCCTCCATCTAGAATTACTTGCCTCAAAACTTGAATATAAATGAA
TTTATCTAGAACTAAAATACACCTAGATACATCCATCTCCCGGACAAGTATTTTCGGACG
GAGGGAGTAACAACAATCAACCAATCTCAAAGCTAATGAGACCCATACCAATTGATTGGC
AAATGGGCCTAGGTGAACTCCAGTGCACAAAGGGCTTTCGATAAGATATATTCATATATA
TATATAGAGAGAGAGAGGGAGTAGCACGATGGAATTTAACAAAAAAACAGCCAACCAGAC
TTGCACAAATATACAGAGTAGTGCATGATGGAGTACACTTTTTACAAGACATCTACAATT
TCAAAGTTCAGTTGCCACTTGGATGTATTCTGTATTTGTTTTGATATAGATCTTCAGTTT
TTCACAATCTGATTGTTAAGACCATAATACACTTTATGTGTTCTGCCGCATACACAATCC
TCCATTATAAGTAGTATGAATATAACTGATTAAAAAAGCACAATACGGTACTTTCATGTG
CGAATCCAGGTTGTATGCAGAGCGCGAGAATCTCATGTCAAAGTCAATGTATCGGTGACG
AGTACTCGCGCATGACGCCACACACACAAAAAAAGATATTAGAGTACGACAGAGAAGCGG
GAGAGCAGATCGTACCCTGGTCGTTGCGGGCGGTGAAGAGGACGCAGCCGGTCTCGTCGC
CGATGAGGCACTCGGCGATCCTGGTGGGCTTGGCCGCTGGGCCGGGGCCGCCAGTGGCGC
GGGCCTTCTGGAGGACGGTCTTGGAGCTGAGCACCTTAGCGACGAGCGTGTGGCCGCTGG
TGACGGGCTTGAGCTGGTCCACCTTGACGAACACCGGCTTCCGCTTCGCCGCCGCCGCCG
CCGTGGCCATGGAGAGGGATACAGATAAGAGTTGGGAGAGGGATACAGGGGGGTTGGGGG
GTCTTGTTGTCTTGGGAGGGCCAAACCCTAGATGGGATGGGGCGAGTTTAATATGGGACG
GGAGAAGGTTGCGCGAGTCTCAGCCTGCGATCGAGGAGGCCACTAACGATGCGGAGGAGT
CGTTAAACTAGGCGTTACTTGTACCATTATGATGAGGGGCAGGGCGAATAGCGTGGCAAG
ATAGTCAAATGGTACTTATCCGTTTCTCCTTTTTTCCATCCAAAAAGGTGGAAAACTGAA
AAAGCCACAGCAGTCCGTCCGTCAGTGGGGAATATAGCCTGCTTGTCGTGATTGCCTACG
TTGCTACTAGCCGCTTTTTTCTCAGTGACAACTGACAAGACGTTTGGCTCCAGTGCGTTT
CGTATGGTTTTTCTTCGAGCATAAAATGTGCACCATGTTTTTTTTCCAGTTGTGTGCACG
ATTTTCGGTAGAAGAAAAACGAGAGATGTCTTCTTTTCCCCTAGAAACTATCGATTCATC
TCTTCCGAATAATAAAGCAAATACGGTTTCTGATCGACCGTCTTAAAAATTACCCTTAAA
ATTTGCATAAATTACTCATCATGCCATCGGTAAGTAATAGAAAACGTTTCATAAAGCAAA
AAATCTTGACATGGGCCGGCCCATGTAAAAATGTCCTATATTACGCTCTGCACGCTGGGA
GAATATCCAACACATCGTATGAGCCAGCCCATGCACACGCGTCTGCTTTTAGTTCTATTT
ATTTATCTATTTTTAGTTCCGTTCTATTTTTTATTTTAAATAATTTAGAACTTCAAATAA
TCTTTAAAATTTTAATAAACTGAAAATTATAAATCAACATATTTAAAA