morexGenes - Barley RNA-seq Database

Contig contig_1592492

Source Contig contig_1592492

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1592492 (2811 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1592492

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20955	1	1667 bp	AK375460	Available	Available	None

CDS Structure of MLOC_20955

Contig Sequence (2811 bp)

>contig_1592492 2811 assembly3_WGSMorex_rbca.fasta
CTAAATATACGTCTTTTTAGAGATTCTACTAGGGACTACATACGGAGCAAAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCACTAGTGAAACCTCTAAA
AAGACTTATATGTAGGAACGGAGGGAGTACTCATACATTACTAAGCATATGTCTACTTAT
TTATTTTTCACATTATCCAAATTGAATTATTTCATGAGCACAGGAAATAATTTTTATTTA
ATTTCATTTCATCAGGTTATCTGTCACCCTTCCTTTCTATACAAGACGCAAAACCATTCC
ACTCCAGTGCAATTTCTGCAGCAGCGATACATTCAGTAACTGTACCATTTAGACTACAAA
ACGCTGGCCCGGCTTCAAACATAGCACATTCATCTGGTAATATTGATATGCGTGAACTTG
TGCACATAATATCTGATCAGGGTAGGCAGAACATGGTTACTGCTCTGGACGTAGCAATGC
CTGCCCCTTCTTTGAAAGGTACACGGTGTGTGTTCCCTGTTTGGTCCGACATGGGTGGCA
ACTTAATCTTTCTCGCTAACTGCATACTCTTAATTTTTGGCAGATGGAAATGATCTGTGG
AACATGAAAAGCCTGCACTCACTGACCCCTGAAATAAGTGATGAAGAAGAAGACCCATAC
TCTGTTGAATCATTGGTGGTTCATGGAGTTCTGCGTGCAGGTTTGCCTAAGGCTTTGGAA
TCCGTTTAATTGTTACCGCGGTCCATGCTACATTGCTGCCTGAGTTCTTTCTTTGACTAT
TGTCACTTACTATTAGCTACTAGTACATTGATACTTGAATTGTACATTTACTACGTGTAG
AAATTACAATTAATTCATGTAAATTTGTTGACACAGGTGGGCATCGGGCATCAATATCAC
AAGTGAAGAGCTCCGTGTATTCAGCTTACGAAGCCAGAGCCACAAAACCAAAGTTCTCCC
ATCTGTCAGTGTCGCCCTGCCCGCTCCCCATCCCCCTCCCGTTCCCGTCAATCTTCAGGA
GCAACATCAGCCAGCACGGCGAGATCCTCGGCAACCACGCAGAGGGAACCCAGACAAAGG
GCTCACTCGACGTCGAGTCGATACCGATGGCCGCACGCCTAAGGTCGAGCAACGCGGTCC
TGCCCTTCATCGAGAGGCGCTCACTGAGCCTCCAGAAGTTTGGTGTCGCCAGGGGCGCTC
TGGGGACCCAGATACTCCGCGACTGGGGCTTCGGAAGGGAGGAGATGGAGGACATGGGGG
AGCACCTGTCCAGGATGGTTCGCGCGCTTCGCCCCGACGACGGCCTAACATCGGATTCTG
ACTAAAACTCTTGTGACACGGTGCAGCAGAGGAGGTGGAATATTCTCGTGCGTGTGCTAC
GTACCTGCTTTGCTTTTGCAATCGAACCGGAGATGCGATCTGGCGTGCGAGGGTGGGGTT
TTGTGATGTATATGCCCATGGCCGTTGGTGTTATCTCAGCACGGGCGTATGCAATGCCCA
CACATGCGATTGTTGTGACATTCTGGCCCATGTTGAGCCTGGATCCAGATCGCCCAGATC
TCCGTTTTCTTTTCCGTTGTTTCTCTGAGGTCGGGTGCCAATGCGGCTTCTGCATCGCAC
TTGCGGGGATTTTGCAGAGATGGGAAAGCTGATGACATGACCGACCTGTGCAGCCTCTAT
CTCTGATGCTTCATGCTTGCATGCACGCCATCAAATTTCGGACGACTTTGGCACACGAGT
GTTGCGAATTTGACTGTTGTGGGGCATGGAGTTCAGCATGGCGCGGCACGAGCTACGCTC
CTGTACGATTACAATCGGCCCGTGAAACCTGGTACCAGTGTACTACTACTAGCATCTTGG
TTTTCTTGACTTGTTGTGCCTTTTGTTTTACTACCGCACCGCGTCTCATTTTCCACGAGG
TTATAATATTGTCCGTGACACCGGTAGATCTGTCCGCGTACTAGAAGAACATGGCACCTA
GCACTTGGCATGAATGAATGGATGGTTTGACATGAATGAATGGATGATTGGTGGCGAGGC
TCACGTGGCCGTCATGTGCTGATAACGCGTGAGGCGAGACATACAAGACAGCCTCGAAAA
GAGAAAATAAAGCACCTGGGGTGAAGTGAGTGAGTGGATTAGCGAGTCATCGTTAGACAT
GAGACACGGGGAACCGGGCAAGGCTTGGAGGGAAACGAGCTCCGTGTTTTCTTTCTTAAT
CCATCGCCAGTGTAAAGTAGTACGTTCGTCACCAAGAATCGGACCGGTGGATGAAACGAA
CTGACCAAAGGGTGTTTCTCGTGTGCCATAGTAACGAGCAACATGAGCCCGTTTCAAAAG
TGAACTATGATGAATAGGAACGATAGGGGCTGTGATATTTTTTTGTAGTTGCTGCTGATG
GTACTGATGCTAGGGGGAGTCATGGAGAGCTTGAGCATGTGATTCTTGCGGTTCAATCAG
TGCGTCCGTGTTCCACGCCGTGCAAAGTGAGAGGCTGGGACTATAGGAGTTTATGCTCCT
CCTTTGTATTTTTGTTCCGGAACAAAAGAATCTCTAGCTTGGTTTTGTCTCATCGTGCGT
CTTTGCTTGTGCAAAATATACTTCCTGTTTTTGTGCTCACTTCACCTTTTTCACACGTGT
CGAGTTGAAGAACTATATTTCCTTCACACGGATTTACATACTCCCTCCTTTCCGGTTTAT
AGGGCTCGTCTCAAAATTTTCAGATTTCCATTATATTAGGCTCATTTTCTAAGTGAGTTA
AAGTGCTTTGAGTCTCACGCCATATTTAATTCATAGAGTTTAGAGAAAGGA