| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_159249
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_20952 |
1 |
733 bp |
MLOC_20952.1 |
Available |
Available |
LOC_Os06g46620.1, FRAME:+2, EVALUE:2e-25, 13106.m04928 protein retrotransposon protein, putative, unclassified |
| MLOC_20953 |
3 |
974 bp |
None |
Available |
Available |
LOC_Os07g46160.1, FRAME:-3, EVALUE:2e-64, 13107.m04859 protein MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed |
CDS Structure of MLOC_20952
CDS Structure of MLOC_20953
Contig Sequence (2042 bp)
>contig_159249 2042 assembly3_WGSMorex_rbca.fasta
TCGTACCAAGAAGATGGCTTCCATGGTAGACCTCCCAGGCATGAAACCAAATTAAAATTT
GATGAACTAGAACTACACTGATTACAGCTTACAATACAGCTGGTATGTTAAAACTAATAT
AGTTCCTGGCAGCATATTGCATCAAACTGCTTGCCCTAAAATGATCACCGGGTACTATAA
ATAGATCACTGAACAAAGAAAAATCATTTAACTTGCTTGAAATCCAAAAAAGGAAATCAT
GACAGGTGCACACCAAGGCACTGAAGTTATGTTTCAAGTAATAGTTCAAAAAAGCGCTAG
GCGTTAATTGTGCATTTTGCCACCGCCTTGCACTTTCCTGACCAAAGCACATGCTTATGC
GCAGATTAAGCACAGTTATGCGCTAGGCGTTTTGCTATCGCCTAGAGCTTAGGCGCACTT
AGGTGTTCGCTTAGGTGCGCCTTTTTTAACTTTCAACCAGGTTGCTATTAAAGAAGTAAT
TTACTTGCTTCCAATTCAATGATGTGACAAAAAAAGGTTGCAAGGAGAAAGCTTCAAGAC
TTTATGGCAGAAAAAGATGACATGGTAGTAATTAATTAGGCGGGAACAAGCAGCATGAAA
ATAAAATAAAATGAGAAGAGGAAGCCATGTAAAACCTTGAATACTGGAGCCTCCATGTCT
TCAATCTTTATGCACTTCATGTTTTTATCCTTCATGGGACCAAAGAGTTGTGCCCTAAAA
ACTGGTGATCGGGCTGCAAGAATCACCTTGTGAGCAGGAAACATCTCTTCATCAACTTCA
AATATTATGTCGGTTCTCTTCCCACTGGTCAACAAATGCCCAATATGCTGAGACATGTCA
GATTGTGGCACTGGTATCCTGTATATCTTTGGGCCTTCAGTATGCGACTGAACAACACCA
ACGGTGCAGTTTACCAGAAGGCAATCATCTTTAAGATAATCTGATGTTTCCAGGCCAGAG
CGTTTGAAGAAACGTTTGTAACCCCTGCAAGATGCACAGAAATAAGTTACTTGTAAAGTT
GCATTAGTTACTGCACGGCAAGCAAAATCAGCGTTCAATGCATACAGTGATATCAAACAG
CTAAACCAAGAAGCTATTCAAAATGGATGGACAGATACACGTGGTCAAACAAGCAAAGTG
AGAACAAGGATAAATCAACACATACATGTTTTTACATGAACCGCTTGCTCTACACTGTAT
TCTAGCAATTTACGTAACATCCAGAAACACAACTACACGCCAGAATGCCAAATAGAAGAT
AGGAAGTGGAACCAAACAGAATAAAATATTCATTACAAAGAGACTATAATGCCATCCAAC
AAGGAACTACAACCACACCTAGATGGTCACACTACTAACTTATACTAGACACACAACTAT
CTAAGATTTGCAAAGGAACTACAATCTCATCCAACAAGGAAGTGCAATCTGATCCTAGGT
GGTTATTTAGTCAGCAACTAGTCGGCAGGGCTGGCGTCAGTCTGGACAGGTGCTGGACCG
CGGACCGATTGCGCCGCCGCGGCCTTCAGCACCATCCGCGGTGCGTCTTGTGCGACCAAG
AGCCTGAAACGATGCGCCACCTGCTAGTCACCTGCCCCTTCTCGTAACAGGTATGGCATG
AGACGCTCTCCTGGCTTCGGCTGACCTGCCGACCGCCAGACCAAGAGGTCACACTGAACG
ATTGGTGGATGCATGCCAAGCTGGAGACGCCAAAACCCATGCGCAAGGGCCTCGCCACGA
CAACTCACCTGACGGCATGGATGCTCTGGAAGCACCGCAACTCCTGTGTGTTCGACGGCG
AGCAGACATCCACCACCCTGCTCGCGACAAGAATCAGAGAGGAGGCATCCCTTTGGGTTC
GGGCTGGGGCTACTGGCCTTGGGGTGATCATGCCGCTGACCTGGGACGTTCACTAGTTTT
TTGTGTTCTATTTTTGCAACCCTGTGAGCCTCCTCCTCGGAGGCGTGTACTGTTAAACTA
CCCCCCTTTTCAATGAAAAGAAACGCAGAGTCTTTGCGTTTTCCCAAAAAAAAAAAAAAA
AA
