Map Locations of contig_159246 (5351 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_159246

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_20947 1 1333 bp AK362642 Available Available None





CDS Structure of MLOC_20947






Contig Sequence (5351 bp)

>contig_159246 5351 assembly3_WGSMorex_rbca.fasta
GCCGCGCGGGTGCGCGCGGTCGGAGGTGGTGCGCGCGCACCTCCTGCTGACGCTGAAGCT
GAAGCCGGACCGGTCGGCGTCGTTCGCGGAGCGGCTGGAGCTGGTGGACGAGCACCGCGA
CCTGGACGCCGTGCGCGACCAGGCCCGCATGTCGGCCCTGTTCCTCTACCGGATGCTGCA
GAAGGGCTACTCGCACATCATGTCCAACGTGCTGGACGAGGAGGCCGCCGCGCGGCAGAG
GGCCAGGGAAGACGCCACGGCCGCTGCATTGGCTGCCGCCGTGGCCGCCGCAGCGTCGGC
GACCAAGCAAGAAGAAGAAGAAGAAGAAGAAGCCGCAGCGTCAGCGGCCATGCAAGAAGA
ACAGGACGCAGCGGCCGTGCCGGAGAGTCCCGAGGCAGAGAACGTCCCGGTGCAGGTAGC
AGAGCCGGAGACGATGGCACCACCGTCACCACCGACGCCGAGGCTGACGGCGGCAGCGAT
GAGCCCGATGTTCCAGGGCGCGTTCTGCCGCGACATGGCGGTGGTCGGGACGCTGCTGTC
CCGCGGCCGGTTCGACCGGCCGCCCATGGCGGTGAAGTGCGAGGCAATGAGCTGCTGATC
AACCATCATCGACCTGGTGACGACGCGACGGCAGCAGCAAGCACCGGCAAACAGGTAGCG
GGAAAACGGAGAGGAAATTCGGAGGACGCGACGTGATATTCAAAACAAAATTCCAAGAGC
TGGATTTGGTGAAACCCCGGTGCTGCCCCGTCTGCGCCGGCACTAGTGTACAGTCTGAGA
GGTCGTTTTCCATTGGAAAACCCCCAAAAAAAGAGAGAGAGGAACAAGGGTAGCAGTACT
AGCAGTAAAGTTTTGGTTTCGTCTTTGACTGGTAGTATCTCTTGCATGTCCACCGTGAGT
TCGTTCGTTCGTTCGTTTGACAATTCATGGCGCGGGCGCCATGTCCTTCCCCTTCTTCTT
CCTTGGGCCGCACTCGATTTTTCGCTCTGCCTTTTCCTTCCAGATGATGATGCTGGCTCA
AACTCAAGCACGCTCTTCTCTTTTCCGGTGGCCCATTCTTGCCATTTCCATTGATGCAAG
AGGACCGGACAGGACCGGCGTGGTCCATTGCACCAGCGGGATCTGTGTGGCGCTATATAT
GTGTGGCGGCCGTTGTTGTTGAGGAGTGAAGAGGGCGCCATTACTTGCAGAGATACCGTA
TCTTTGGAGGACACCTGTTTTCATGTAGAGAAAACGTAGGCTTCAGTCCCAGAGAGTGCA
GTTTTAATGTGTTATCTTCAATAGTTACTCCTATACATGAGAACTGAAAATAATGTCGAA
TGTTAGACCATGGTTGCTTGTGGCACTGGGGTTGGGGGTGGGGGTGACCACATAGCTGCC
CACTGTGGCTTTCAATACTGTTGCAGTTAGTTAGTTGCAAGCAGTAGTGGCATCTGGTTC
TCTGAAGAACACCACTGGGATGATAGGATGATAAGAAACAAGATGTGGGGTAGGGTATCC
TAGGGATGCTTTGACAGTCCATCAAGTCTGATAATTGTAAGGAATTGACTGGGTGTGGTG
TGGCCCGGCACTGGGCATCACCTATCTGTATTGGTCTAAATTCTTCAAAAACTATTGCAC
CGATGACAGGGTATCCTATTAGCAAGTGATCCTAGTTTACTCAGTAAGTGAGATACGACT
ATCGAAATGCACTTAGTGCTCCGTGTTGAGGCTGTAAAAAAACTGTTGAGCACTACTAGG
CTGTGCCTGCGAGTGGCCAGCAGGAACAAGCAGGGATCCGATCTGCTCATACTTTACTAT
AGTATGCAAACTATGAATCACACATAGGTATAACAGCCGTAGTAGTTTTACAGGTACAAG
AGCAGAAGTGGTTAAGATAAGATTGTATCTTCCTGATGCCCTTGATCTCCTCATACCCAA
ACCATCAATCATGCGTGCAATGTGAACATTGAATATTGTCAACTGTCTTACAAGCTGGAT
CCGTATGCATGTATGTATGTATCTCTGTGACGTATGCAGGTATGCTTGGGTAAGATCGAT
CATGGTTCATAGTGGATTAGTGGTTGCTGAATCTTGATTGGTTGTAGCCATTGGAAGTTA
CACAAAGAAAGGGTTTCCAAGGCCTGAGATGACTTGATAATCTCGCTGGTCCCTGAAAGA
TCCTGCAGTGGTTGCATCAGAAGTGCAAAGAATTCCAAAACTAGCTAGGCCCGACGCCCG
CTGCCCGCATGGCCGCTTGCGTGCGTGTATGTATGTATGCATGCATGCATCAGTGGTCAG
TGCGTCCGTGCATGTAGTACCTGCTTAGTTTTGTGATGATTGAGAATGTGATATTCGTGG
TGTGTGAGGTAAGAAACGATTCATTCCTGTTATGACACTGCAAATCTTGATACAGTTTAG
AGTTTCGTCTCCCGCCTTTGCCTTTTCCTCGTGACGCATGGACGCATGGACGCATGGACG
CATTCACATCTGAGACACGGAAGTGGTGTGAGCTCGTAAAGGTGAGGAGTCTGGATTCGT
CACGTGGGCGTGGGTTCAGATGAGATGAGCCTAAGGCCTGTTTGGTTTTAATAAGTCAGA
TGACTTATGAGTCAGGTGACTTAAAACCAGTGACTTATAAGTCACGTGTGTTTGGTTGTC
ATCTGACTTATAAGTCACCTTTCCATGTAAAAATGGATGACTTATAAGTTTTAAGTTAGG
GTGGAGCAACTTATGACTTATAAGTTGGCGTGACTTATAAGTTACGTCTGTTTGGTAAAA
TAAGTCACTTTTTGCATTTTTCAACTTATAAATTGGTGACTTATTTGGAACCAAACAGGC
CTAATTTGCTTCGTCCAAGATTAAATGTATGACCTGATGGTGTTACCAAAAGCCTGAAGA
AGAAGAGGTGTGGTGGCATGGCATGGCAGGCGGCCATGCTCGGTGACGTAGGATGACAGC
GGAGGCAGAGCAGAGCAGAGGAGAGCAGAAGAGTAAAGTCATTGGCTCCCTGCATCGTCA
TCTTAATCTTGTTGTCCAGTGAAGTCGTTGTCAGCTGCGGCCGGCATGTTTATGTCCGCT
TGCGCCTTTTTGCGGAGTATAATTCAGTACTGTACTACTACGGTGCAGCCACAGCTGAGG
TTGAGATGCTAAAATTAGTGAGCAGCCTTTCCCACAAATATCTGTAGCTAACAAGTGTAA
CAGTTCATTATTGAGGAGAATATGTTGTGTACTTCCAAACATTGTTGATTGATTGATCAC
GAATTAATCGATCAGCACCAGGAAAGATGCGCCTCGTGTTACAATACGAATTGTATAGGA
TAAGGAAAGTGGTTTAAACTTGTCTCTATCTCTTCTTCTCTCCCTTATCTCATGTAACCT
TCTAAGAGGATCTTCACTTGTACTTCAAGGCATTGGTCATATAAATATATTACGGCCCGA
GACAAAGGGTTCTACGGTTCGTCATACCTTCAGCTTTTGTTGAGAGGCAGGTGATGGTTG
GATGGACGGACACCTTCACGCGGCGACGGAGACGGCGATGATTACCGTTGGGTCGGGTGG
GTTAGTTACTTATTAACAGAGCAGTCCAGATAATTCGACCATTAGTACGAGAGGAGAATC
ATCAGGCCTTGTTCGGTTCCTTTCGAATTGAAGGGGTTTGAAGGGGATTGACAAGGATTA
AATCCATTGCAAGTTAAATTTCACCTCAATTCCCTTCAATCTTCTTTAATCCCCTTCTTG
CTGCGATTAAGCGAACAAGGCCTGAGGGGGCGCGGCTGCGGCTGCTGCGGGAGAGGTGAT
TAATGGCTGGATCAACATTAAGCGCCTCTGACATTGTGCTTTAATGATCCGTAATTGGAT
CTGATCTCTACCCAGTTGCCCTGTACGGTAATAGTACGAGAGCAGCAGCAGAGTACTTTC
CCGTTTGTTTAAGAGCTTGGCCATGCATGCATGGCTGACGGCCTCTGCTCCTGTTAAGTA
CTCTTACTTAATAACTAAGGAAATGGTAATGGATGGAGAGAATCATTCTTGAAATTCTTT
GCACTTGTAACAAGCACGGCCTAGTTTTGTTTTTTTCGCTTTGCACGGCTTAGCTTTAGT
TAAGGTTGGAAATTGTTTGACTTTAGTTAAGATGGGAAGTATTGCGTGGTCGCCCAATAG
CTGAACAATGAACGAGCGTGCATGAAAGTCTCTGGCTTCTCCAGCAAGTGTGTCGGGATA
TTCTAGCTATAGCTTCTCGAGGAGTCGGCTTCCCACACAAGACTTGCAGTTGGCACTAAT
TTTGAAAGAGACAAACTTGTAGAAGGAGACGTCCTTGACGACCAAGGCATAGCCGAGTAA
TCGCCAGGGTGTCATGTCATCGAGGCCTCTGCGCGGCCACGTCGGTGGAGGAGGGAATTG
CGATACAACTGTAGGTTGTGAGCTGGAAAGCGACGGCACAGGTGGAGGCGGGCACGCGAC
ACGTGGCAGATAGAAACCTCGAACGATCGACCACCCCGCCAGGTTGTCATCGGTGTGGTG
GTCCAGCATGTACTCCAGCTGGGTGCAGTTGAGCAGACAAGCCCCATTGTCGTGCAAAAA
GAAAGAAAGAAAATGACTTCGTTCTTGTGCATCTGGACTGGCAGCACGCGCTAGGACGTC
GTGTCGGTGAGACAACGGCAGCCTTCCTTGTGCATCTTGTTAGAAATTAATTAGTAGATT
AATTAATCAAGGGATGTGTCCAACCTCGAACACTCGTGTCTCCTCTCTCTATTGCCAACA
AGCACCTATTCTGGAGGGATGCCTCCGAACAGACACCTTTTTTTCACACCTCTTCCAAAC
GTATATATACTTGAGAATCAATAGAAATCAGGACTATCGTCCATTCACTTTCATTCAATC
TCGTTCCACTTTAACACGTTATCAGCACTTCGCTCTACCTTGAGACAAAAGACCATTCAA
GACGACCAAACATCGGCAACGCTTGCTACAGAATCAAGCGCACCGTAGTCACGATGGATG
GATACAGATCGATCCATGGCACAGATCGATTCATGACTTCTGGCCGGTCTTACTGCTCCA
TCCGTCAACGGGGACGTCCTTACATCAGTGACGAGGAACTCTACCGGCGCAAAACATGGC
TGCTCAGTGCGACCCGCTCCCGGCCTCACCGTCATTCCATCGCTGAAGGATTTCACTAGG
GCGTCCACGCAAAGACAGCCATACATGCATCCATGAAAGGGAAAGAGATAAATACATTGT
GAGTGCCTTAACTTGTCCGATGCGGTCACTTTGGTTCCTAAAGTTGCAAAATACGCAAAA
TCGGTGTCGTAACTTGTCTCTCCGTTCAAATATAGTGCATCCTCGCGTATTAAGTCGTAT
GTAGCGCAAAC