morexGenes - Barley RNA-seq Database

Contig contig_1592014

Source Contig contig_1592014

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1592014 (3413 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1592014

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20848	2	1364 bp	AK250311.1	Available	Available	None
MLOC_20847	1	3370 bp	MLOC_20847.1	Available	Available	LOC_Os02g10190.1, FRAME:+2, EVALUE:4e-104, 13102.m01128 protein DUF1680 domain containing protein, putative, expressed

CDS Structure of MLOC_20848

CDS Structure of MLOC_20847

Contig Sequence (3413 bp)

>contig_1592014 3413 assembly3_WGSMorex_rbca.fasta
CAGTGCTGTTTCAGACTGGATCACTGCAGTTCCTTCGTCACACAACTCACAGCTGATGAC
CTTCACACAAGAATCAAGTGGGAAGACATTCGTCCTGTCAAGCTCAAACGGCTCTCTGAC
AATGCAAGAACGGCCTACAGTCGATGGCACAGACACCGCCATCCATGCGACATTCAGGGT
GCACCCTCAGGACACAGCAAGGCTGCATGGCACCTACGGCGCAACCCTTCAAGACACCTC
TGTGCTGATCGAGCCATTCGACATGCCAGGGACGGCGATCGCCAACGACCTCACCTTGTC
CACACAAAAGAGCACTGGTTCCTTGTTCAACATAGTATCAGGGCTCGACGGGAAGCCGAA
CTCGGTTTCGCTCGAGCTCGGGACCAAACCAGGGTGCTTCTTGGTGTCTGGGGCAGATTA
CTCTGCCGGGACAAAGATCCAGGTCAGCTGCAAGAGTTCCATTCAGAGCATTGGCGGGAT
ATTCGAGCAGGCGGCGAGCTTTGCACAGGCCGCTCCGCTGAGGCAGTACCACCCGATAAG
CTTCGTCGCGAAGGGGGTGCAGAGGAACTTCCTCCTGGAGCCATTGTACAGCCTGAGGGA
CGAATTCTACACGGCTTACTTCAACCTTGGGGCCTGACGCCGCAAGGTCACTTGCGCCTT
GGCACAAACAAACAAACCAAGAATAATACACGCCATCTTTCTTTCTCATTTATACTGTAG
TTTACAACAGGCAATAGAAGAGGAAATTAGTTGTTTCTTCTGGAATACTATGAAATTACA
GCTAAATACGATAGTGTCGTTTCTTTGGTGAACAAGTTACTTCTGTTTGTGTGAATTTTC
TTGTTTTAAGATGAACAAACCATGATGTTCATATATGTTGAAAAATGCTGCTAAAAGTTA
ACTGCGTCCTTTGGCATATATGTTGCTGCTTATCCTGGTAATGGATAAGTAGTCAGGGCT
AGTAACAGCACCTAATCTTGCGAATTAAAATACATCTCCAGCTACCGGGAGGAGGGCAAA
GTCTGGGTCCTATCCACTCTCATAAACAAATGCTGGAGGAATCAGTGCCTGCATTTGTTT
AACACATCTCTGCTCAACACCCGGCAAAAGAGTTGATCAATGTGCACATCATGTCTAGAG
GGGCCTGACCACAAATGAAGCAAAAGAAAATTCTTTCCCCTGGAAAGAATAGTTTGGCGC
AACCAATTGGCTTCTTTCCAAGGGACAATCATGCCAAAACAGCTCAATACAGATTTCATC
AACCCATGTGTTGCAGTAATTGTGTATGTTACGATAGAAGATGCAAGGGGGGGCAAGATT
TCGGATTCGACACCTGGATTTGTGAAACAATCAGCATTCCCAATCAAACGCTGAATCCTG
TTTTAAACTACAGCTTTCCTAGGATGGAATTTTACAACTGGTGATCAGCCGCAAGGTCTT
GATTCTCTTCATTTTGAGTTACTTAAGCATATTATTCCTGGCATGTGAAACATCAGGTGT
ATTTACTTCAATCATAATCCACATGACATATGCTTGGCATGTGAAATATTCAGATGTATT
TACTTAAATCATAATCCACATGACATCGGAATTAGAGGGATGACATGAGAACTATACCCA
TGTTTCCCATTGCTATCAGATTTTAGAGAACTGGCTTCAAATTTGATGTATATTTGAGAG
TTGAGAGCTAACCAGGTATAATTTTGCAAACTTGCCCTGATGAAAAACAACACCAACTAT
ACAACCATAAACATGATTCAACATACTCAAATATGTGAAATGAACTCACACGCAATATGA
TGAACCATTGCTGGTTACTATTACTGATCAGAATTTAACACACATGGGACAATAGTACAT
AAACAGAGCTAGCTAAAATGAGAAGCCACAATACTGACCGAAAAAACCACCATGAATAAA
GTTACACAACACGCAAACCATTCGGAATGACTGAGAGGATTGAGTTCTTGCAGCTGCCAC
GACGCAGTGTGCATCACGATGCCGTACAATTTAGGAAATGTGGCAGCCAACAAGAAAGGG
AGGTGCAAGGATGGCACAGCAAAGATGGATGATGAACCTTGGCAGATTGCAACCATTTCT
TCCCTGTAGGACACCTAAATCTTGTCGAGCTTCTCTGCCTTCACCACTGGGTTGGCCTTG
GCGATGGCATCCCTAGCTGCAGTCCGGTAGTCGAACTGGCAGTCATGCTTGTCGGAATAG
CGGTGCAGCGAACAGTACATGTTACCGCATCTGCAGTTGAATCCCGTTAGCCCAACCCTC
TTCCTGCAAGTTGAGCACCGATTCGGCCCCTCCTTCCTCTTGGGGCTCACGGCAACAGCT
TCGCTAGTGCCTGCAACATCAGCAGCAGGCTGCACAACGAGTGCCTTCACGTCAACTTGA
GCAACCGCCACCTCAGCGCTCGCAGCCACAGCCGCAACAACAACAGGTGCTTTCCCACCG
TCGCCACCGTTAACAATGCTATCAAAGGAGGAGGCAGCCAGCTTGGCCTGTTCCTCCTTC
ATGACCATCTCCTTGTGGCACTTGGAGCACATGTTCATGGTCGCGGCACTGCCAAAGAAG
CCGCAGTTATTAACGCATAGGATTGGGCCCTCTGGCTGCTGGCAACCCGCCTCCTTGTGT
TCCATCTTGAACAACTGTGAGCTGCACACAGAACAGACAACGGTAAACATCAGCATCAAA
CGAGGAAGAAACAATTGCAATCTTACAAGAGCAAGCGCAAAACCGAGTCAAGCCACACAA
CGAGGATCCTAAACGTACCGGAGCATAAAACTATGCTATGAGTTGTAACTGCCAGGCACA
AACAATCGTCGCCGCAGGGAGGAGCGCACCGCTCTTTCTTTCTTTCTGAAACAAGATCCT
GATTTCTAGGAAATCAACATGCCAAAAGCGACCTCTCCCCAACCACGGCTACCAATCAGA
GCCACTTATTACTTCCATTTCGCCGACGGTCCAGACGAGGAACGGGGCACCGAATTCAAA
TCTCGAAAACCGGAAATCTCTCCCGAGAGACGATAAATCGAACACGACGCGCGGCAGCCA
CGCCGCGTGATTCAGCTAATCCTGACGGCTTTAATTTATTTCAAAAAAAAAGGTAAATCT
AATCTAATCATTTCCGCCCAGAAGGAACAGGAAGGGGGGAAAACAACACGCAAAGACTTC
TACCCGAACCGGACCAACCACCGAACGGAGCCGCGGGCATCACAGAACGCGGCCCCCTTC
CGTCGATCCCCGCACCGGACGAAGCAGCCGTCCGAGGAACCACACAGGACTGCCTCCTCG
AGAACAAAACCCACGCGGATCGACGAACGGGACGCCGAACGGACCAGATCAGAGCGGGCG
AGGGGGAGAGGGAGGGTCATAACTTCTTCTAGCCTACATTATTCGAAGTTATA