morexGenes - Barley RNA-seq Database

Contig contig_1591909
Source Contig contig_1591909
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1591909 (5770 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1591909

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20816	4	2470 bp	MLOC_20816.3	Available	Available	LOC_Os12g38730.1, FRAME:+2, EVALUE:0.0, 13112.m03997 protein expressed protein
CDS Structure of MLOC_20816

Contig Sequence (5770 bp)

>contig_1591909 5770 assembly3_WGSMorex_rbca.fasta
AAGGCACCCGCAAGATGCAGTGAGTATCACCCAATAGTTAATTTGAACATGAGCATGTAC
TCCCCCCGGTCCAAAATATAAGACCTTTTAGAGATTCCACTATGTGCTACATACGGATGT
ATATAGACACATTTTAGAGTATAGATTNNNNNNNNNNNNNNCGTATGTAGTCTATAGTGA
AATGTCTAAAAGGTCTTATATTTAGGAACGGAGGGAGTATTTCAGTATGGCGAAATCATC
TCCATCAGAATTTAATAGAGAAATTAATCCATTCATCATGGCAATTCAATCCCCGACCCT
CTGTCGTGAGCTGTGAGCTGAGCTGTAAAAGTTAAAATGCCAGTGCAATTCGAGCAAATA
GGCGAATAAATTTTCATTTTAAAACCAAATCGCCATGTAGGATAGAGTAATTTAATATAC
CTCCTGTCTCGTCTCTCGTGTGGTTTGGCTCCTTGGGATGTTCTTCTTGCCTCTTTCGGA
CCAACCCAAACCCCCCCATCCCAAATCCCAAATGCCTCCTGTCCAGTGGTGCTCTGCTCT
CTCTCCTCCCTCCCCGCTACCTCGCGCCTGACCAGCCACCTCGCCTCCGCATTGCCGCTC
CGCCGGGGGCGCCGGCAGCCGCTGGCGCCTTATCCCTCCCTCCCCCCTTTCTCGGTGAGA
AAAAGCTCCCGCCCTCGGCGATCCTTGGCCGTCTCTTCCGGAGATCTTTTGCCCCGCCGC
TTCTGGGTTTTCTTTGGAGGAGGGGAGGTCGGGTCGTGCGGCGAATCCCAGGTAATCCTG
GTGTATTCGTGGGGTGGAAATTTTATGTGCCAATATTTGGTTGGGCCTTGGTCTTGTGCG
CGTGTGACCTGGGATTTGATTCGGTGGGTGGGCGTTTGCTCCCTGGACGCTTCAGGATAT
TCATGGAGGGATTTCGCCTTTCTTTAAGATTGCGGCGGAGGAATTGGGGATCCCGCATCG
CTTTACTCGTCGTTTGTCTCGAATAAATATTTGCATCAGCTTTGTGTACATGTTCTTGTG
CTAATTTGGTTGCTCATCATTCATGTTTGAATGCGCAGGTTGGTGACCCTGTTCAGCTCT
GGAGATGAGGAGGTGCCTGTGCTTTTGCCTTTTGCTGAGGAACTAGTGCCAGGTTGCAGG
ACTTCCAATGGATAAGCAAAAGAACCACAAGAATGCGGAAATGGGGAACGATGTGTTCCG
CAGAATGATCCTTAATCAGGTTGGCAGGGACATCGGTTTGGAGGAGGAGAACGTGCCTTG
CAATACTCCGAGGAACTCTGTTCATTCGCGGTTTGGCGGTTCATCTGCCAGATTTGCTGC
TTCCACCAATGGAAGCACCGGTGCTGAGTCGGTCAGCCCAGGCGAGTATGTCAGAGATCC
TGGATCCATATTGAGCTTGCAGCCTTGGATTTTTAAGAGAAGCAGCACAAAGGACAACGA
GGAAATGGCGGTTCCAAGTGGTCGCAGGGCAGTTGGTAGAGGCAAGAATCTGGTGGATGG
CTTTCGAGATGGTTCGACTACTGAGGTTTCCACAAGAAGCCCTGGTCTTGGTTCTGGGCC
TGGAGGAGGTCGAGGTGCTCTTAGGAGCAGACGACCCCAGAGGCATTTTTTTAAGCCACT
TGTCGCAACAGAGAACTCGTACATCCCACAACTTTACAACGAGAACTTCGAGTTTGAAGA
ATGCACATTTGCTCCAGTTCCATCCCCAGCTTCTGCTAGGCCATTCATTGTAACAGATGG
GAGAAGAATCATTAGTAAATCGCGCTATGAACCAGTGCCGGTACCCTTTAATATTGGGTT
CGACAAGGAGGGTTGTCGAAATGGCTCAGAAGTGCCAGAAAGTGTGGTTGGAATTGCTCC
TCTACCTGAGCTGAATAAATCCAAAAGGGACAGCAGGGTAGCGCAAGGTACAAGGTTTAG
TTTGCCTGGCTCCCAAAGCGAAAGATATAGTAAACCATCAAAATCAGCAGGTAATTTCGG
CATCGCACTACAATTCCTGCAATATAATCTTAGCAGTTTGTACATGTTTTTTTTCCTATC
ACTTGATGCAATCCGCTGAAACAAAGCAAGTCATGAATAGTGTATTAGCAGACATGCCTC
CTAAATTCATCATTTGCAATTTTCAAGTGAAACTTTTTTTAAATGGTGTGTGATTACGTT
TCCCAGTTAATACTAGTAGAAAGCTCAGTGTCATGTGTGGAACCTCTGTTCCTTGCCCCG
ATGACACCAGTTGGACTATCACATGCTTTATTATGTCATATGCTCCTTAAGTCAGTCTTA
GTCTTCTTGAAAATAATCTGTCATTCCTAAAATATTGATTGACTAACCTAATTTCCAAGA
ATTTGCTCAATCTGCGCTCACTACTTTATGATTGCTTGGGTCACTAGAGCTGTTAAACGA
TGAAGAATTTGTAAGATCTATCCGTAATATTTCAACGGGGCCGACTGATTTATCATTTCA
GGACAAAATGCGCTTGAACAACATTCATGTTTCCTTGTTGCTTCTTTTTCTGATCTCTTG
CTAATGGTTGTAAAAAAATGTTGTAACTCTTATTAAGTAGGCTATTTTGGATGCTGATGT
TTTGCTACAAATGTTATGCTTCATACCGAGTTGTTGTTTTGGGGTTTCCCCCCACTTGAA
GCATTCAAATCCTAAATACGCACATTTGATCTGCAGGTTTACTGGAACGAATGCTCATGT
TCTCCAGTGGGGTTGGCATTGGTATTATATCTTCCTCTCTATCAAGCAAAAAAGATCTTG
ATTCGTTGAAGGGCACACTGAAGCGAATGGAGAACTTGGTTCAGGATTTGCAAGATGAGC
TGGAGATGAAAGAGGGGTTAACCGTGGAGGAATTGCCTAATGAAACGTCTGGTGAACAAG
ATGGTAAATCAACAACTGTCGAAACAGAACATCTTTTACTTGCTCGTACTAAAAAGTTTG
TGATCCTTTTTATTTTCCACTCTTGGTAACAGATAGCAATATCAAAGCTCACACCCCTGA
TTCAATGTCAATGAGCAAAATTGAAGCAGAACTTGAAGCCGAGCTTGCAAGGCTGGAGTT
AAATATCACTTCAAACCACTTGGAAGAAGAACCGTTTGACTTGAGTGAGGTAACAATCTT
GTATCAAAATGTTATGAATGACATCTTAATTAGGCTACAGCCTACAAGCACACTAAATAG
AATTCCACATTTCTAGATCGATCAGGAGTTCATTGGAGATATTGTTCAGGGGGAACTGAA
GAGCGACATGATTCGTCGTGACATTGCTGATTACAGCAGTGATAGTGACCATGGCAGGGA
CAGCAGACGAAGCTCCTCAGATTACACACATGAGACAAACTATCCTGTTTCACCTAGAGA
TCTCAGTCTCCGTCTCCAGAAGGTGATCCAGCATAGGCTAGAAGACCGAATCAAGGAGCT
TGAGACAGCACTTGCTCAGAGCCAGAAGCAGGCGCAACTGCACATAATGGCGAGACAGCG
AGTCTTCTCTGAGCGGACGTGCTCAAACAGTGATTCAGGTTCGTCCTCCAACCAGGATAG
CCCATTGCTTATACAAGAAGCTAGCTCCTCCGCCGAACCGTTCTGTCTAAATCTAGCTGG
AGATGCACTAGAAGCCTACGATGAAGCCTATGAAGAATTCATGAGGATTGCTGACTCCCC
TTGCACCACAAGTACAAACGGGAGGCCTCAAGTAAATGAAGATTATTCAGTTGACCGCAG
CTTGATCTGGGGCTTGGAAGATGAGAGCGCTACAGAGCTGAAAGAGGACAGCACTTGGGA
GCAGGCTGTGAACATTGGGGACCCTAACAGAGCTCAAGAGAGCGATGGAGACGAGTCGGG
TGACGAGGATGACCACGATAGTGAGATGCTCATCCAACAGATTGTAGAGAGAACTAAGCA
AGGCTCACCTGTACTCATACATGCTCAAAGAATGTTGTTTTCTGTGGATGATTAGGTTGC
AGGACTATATTATATACCATTGAAATTTTGATATAGCATGTAGTGTTGATTAATTGCCCA
GGGGAAAAGAAGAAGCAAAATGTTAGTTTGGTGAAATCTTCTGGTGATATAAAATACTTT
TTTGACATGTGATCATTTACAAACTATCTTGTTTATGCTCATTGTGGTGGTCAGGCATTG
GTGGACTTGTGGCAACATTGCTATTAGCCTATTACACTACAAGAGTGAAACTGAAAAGGT
AACAGGGTCACACTGGGTTGGGAACTATATTGTGCACACTCCAAATTTTTGCCTTTTTGT
GCCCACCTTTGATACTTTTTGAAGTTCGTTTTGACATATTCCAAGAGAAAGGTTTCATTT
TCACTTATGTGTGAGACTAGGATTCTTTTAGTTCTGGACAACAGATATTTCACTGTGAAA
TGGAAAACCTCTCCTTCGTTAGGCCTTGTTCGGTTACACCTCTTCTCAAGAGGATTAGAG
GGGATTGGGGTTGATTTTGATTTGTAGGGGATTATATCCACCTCAATCCCTATCAAACCC
CTCCTAAATCCCTGCCAACCGAACAAGGCTTTAGTGGATTTAGCTTATAGCATTCAGAAT
GTTGCGATGGCATTGTTATGCACAAGTAAACATGGTTGTCAAAAAGAAAAACACTATCTC
ATCCCGGCAAAAAGGAAGCCAATGAGGCATAGTCACCGCCTCACCAGGTTCATCTCATGC
CTTGAAGGGTTCAGCCATCTGTCAAATCTTGTTTGTCCTTGATTAGCACGAACAAGAACA
AATGTCACCACTTTCACTTTGTTTGGTTTCCCTCCAATATCCCAGAGCTTTCATCCAATT
GCTCCTGGTCCTGCGCATCGGGACCTCCATTGCGGTGGGATCAGGGACCTCCACCCTGTT
TTGGTTCGATCGGTGGGCTAGCGAGGCCCCTTTTGCAGTCCACTTTCCGAACCTGTTTGC
CATCGCGGTGGACCCTAGGATCTCCGTTGAGGCGACCCTTATTGACTTAAGGCGTCTGGC
GTTCCGGCGACCATTTGAGCCCCCGGACACCATCGCATGGCACGAGCTCCTTGAGATCGT
CGCCCTCCACGAACCGATCGTAGACCAGATTGACGATAGCACCTCCTGGCATCTAGAGCC
ATTGGGCAATTTCTCCACGAAGTCTCTGTACCGAGCCATCGCTGCCACCCCGCTCCAGGG
CCCTTTGAGTTGATCTGGTTGATCAAGCCTCTAAAGATCAGGATCTTCCTGCGGCAAGGG
TTCCCTCCGGCGTGGAGGTGCTTAAGAGGAATGGCCCGGGCGATAGGATTTGCCCCCTAT
GTGGGACAATTGAAGACTCCAACCACATCTTCTCGTGCGTGTCCTCCCAGTTCCTTTGGT
CCCACCTCCACGAGGCCATTGGTGGCCGTTGGTGTAACACCAACTTTTCCTGACCTTTGC
ACCGAGATCCAGACCTCCCCCTTCAGGACGCCACATTAGGTGGTTGGTTACTGGGGTTCT
CGTTTGGACGCTTCAAACGGTTCAAAATAAGCTTGTGATTCAGCGTGTCCCTCTTCGACG
TGCAACTCACGCGATGTTCAAAATGTGTGATTACTTGCAGCTCTAGCGGCCGCTTAGCCG
CCTCCAGGACCGGGACACCATCAATTCATTCAGTACTGATCTCCGAACGATGGCCCTTCA
CTTGGTGTCGTCGCTCCCTCCGCCACCACCTAAGCCGGATTAGCTTCTTCGCTTAGCGGT
GTGTCCGCCTTGTTGGGGAACGTCGCATGGGAAAAAATCCTACGCGTACATAAGATCTAT
CCATGGTGAT