morexGenes - Barley RNA-seq Database

Contig contig_159169

Source Contig contig_159169

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_159169 (4659 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_159169

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20763	1	292 bp	MLOC_20763.1	Available	Available	LOC_Os07g46760.2, FRAME:+1, EVALUE:2e-42, 13107.m04947 protein RNA recognition motif containing protein, putative, expressed
MLOC_20762	2	1179 bp	AK368897	Available	Available	None

CDS Structure of MLOC_20763

CDS Structure of MLOC_20762

Contig Sequence (4659 bp)

>contig_159169 4659 assembly3_WGSMorex_rbca.fasta
ACAAAGATGAATGATATTGCACCAAATCTGACGTCATTGATTGGTGAAATGGTTGGAGCT
CGGTTGATCTCTCACGCTGGCAGTCTTTCAAATCTTGCAAAATGTCCTGCCTCCACTCTC
CAGATACTAGGTGCTGAGAAGGCGCTCTTCAGGTAATTGTGACTGACTGGACTGCTTATG
CATTTCCACACCCTAATTCAGACTTTGTCCTCTATGCTTCTGAAATGTTGTGATTGATTG
ATTTCTTAATTTTACTTCAGAGCTCTTAAAACACGTGGAAACACACCGAAGTATGGCCTC
ATATTCCACTCATCTTTTATCGGCCGTGCATCTACCAAGAACAAGGGAAGAATGGCTAGA
TACCTGGCAAACAAATGCTCAATTGCTTCACGCATTGACTGTTATTCAGGTTAGTTGAAG
GACTTTGCTTGCAAAGGTTAAACATCCTGACTGCCTTTTCTATTTGTTTTCCTCACTGGG
TTATGAATTCCAGATATGAGTAGCTCCATTTTTGGTGAGAAACTGCGTGAACAAGTTGAG
GAGAGATTAGACTTTTACGACAAGGGTGTTGCACCACGCAAGAACCTTGATGTAATGAAA
GCTGCAATTGATGGTATGACCAGCACAGTCTCAGAGGAGGGTAAGGGTACTTCTCTTTAT
ATATTGGTCTCTCAATCACTTAATTTCAAGTCTTTCTGTACATGTGTGTACTTACACCTT
GCCCCTGGACAATTCTTTCACAGATAAGGAGAAGGACAATGGTGTACATGTGTCTGCCAA
GAAAAGTAAGAAAAAGAAGTCGAAATCTGAGGCTGACGGTGACGCCATGGATCTTGATAA
GCCTGCCAGCACGGCCGCAGGAGAAGAGACAGAGAAGAAGAAAAAGAAAAAGAAGCACAA
GCTAGAGGAGCCCCAGGATCAAGAGATGGCAGCCAATGTCGACGGCGAACAAGACGAGAC
TCCCAAGAAAAAGAAAAAGAAGAACCGTGATGCTTCAGAGTCTGTTGAGCCTAAGACAGC
CACAGAAGGGAAGAAGAAAAAAAAGAAGTCCAAGGGCGAGGCCGATGATTAGACTAGAAC
CCCTTTGTTCTGCTTAATGAAATTAAACATCTATACTAGTAGTGTATAATTTATGTACAA
CCATTGATCTCATCGGGCCTCGACTGTTGAATCTTTCATCCAGCATCCTATGGTGGTGTT
GAACACATTTTGAGGTCTATAATGTGGAAGAGCATGGATTGAGAGGAGGCTGTTCAACAA
CTGCAGTTTAGAGCATGTTTTGCGATTCATGTTTGATATGGTAAGTAGCCCTGTTGCACT
GGAGTAGTTTGGTCTTGATTAGCACTTGGGATGTTTTGGTTGGATGTGCGTTCCTGAGGG
TCTTTTATTGTTGCCTGGGTTTTGTCAAATCTGATTTCCGAGTCACACATTTTGATGTGT
ATATAATCTAGAAGAGCATTAATCGAGGAGCCTGTTGGGCTAGTGAGTAGCCCTGAACAA
CAAGAATGGAACCATAGGCTTCGGGTCTGCTTTTCATTTTCTGAACAAGATGTCAAGTTG
ATACGTACTATCCACTGCAGTCAGCATGCATGGAATGGGAGCTCGCCGGAGAAGATGACG
ACGGTGCTTCAAGAAGAGGGCTCTATCCGCTGACGGGGTCGAATCTCAACCGTCGGTCCG
ATCGAGCGGCCAGGATCTAGCCGCAGCCCCCTCGCCCCTCACTGCTCTCGCGACGTGCCG
CCGCACCGCACGAGGGAACCCTGCTCACCCCCGTCGTCGCTCCAGATCGGCCGTGCCGCC
GCTCCACACCGCGAGGCCGTCCCTTCTCACCCCCGACCTGCTGGCCTCCAACCGCGCTCG
AGGTAGCTTCGTCTGCATCCTGTCTCCTGCAGCTATGTACCGCTAATGAACCTAGTTTTG
CAGCTAACGAACCAAGTTTTGCAGCTATGTACCAATGTGTAGTGTACTCATTCGCTGTAG
ATTTGTACACTGATTTATGCACCAGTGCTAGATTGTGTAAAATTAGCAGTAAGTTTCCTG
TTGTTTGCATTACTTTGGTGCTATAGAAAATTACTTGTAAGTTTCCTGTTTGTTGTTTGC
ATGCCATGCTGAAAATGATCTATTATGCTAAGTCAGAATATGTTTGCATTGTTATAGATG
GATGAATCGGCAAGAAAAGGAAGGCAACTAATTGTGAGAGGAGCCGGTCTAGTAATTGGA
TCGTACGCTTACATGATGTTCATGTTTAGAGCTAGGGAACAAAAACCAAGGATAACCATG
GGCAGCATGGCCGATCGATCCATAACTAGAGATTCAAATTCGAGATACATTTATCACTCT
ACCGTCATAAATTGCTCAAATCAGCTAAGAATGAGAAAAGCTCCTTTCTTCCGTTTATGT
GCTTTGTTTAGAGGGAGAGAGAGAGAGAATTGTTGTTGGATAGCATCCATACTTCAATTG
AGGAACAAGTAGCCATGTTTCTTCTAGTAGTTGCTCATAACCAAAGGTATAGGACATTAC
AATCGATGTTTAGAAGATCAACCGAAGTCATTAGTAGGTATTTTAAGGTAGTTCTTTATG
TCAGGTAATAAACAAGAGCCTACTACCTATGGCAGAGACCACCGAGAACAAGTACCACAT
CCATGAAGAGGAAGACCTGGTCGGAGAGGAGGAAGGAGGTACCAGGATCGAAGGAGAGAA
GGGTGGAGGGGCTGGAAAGAAGAGGAAGCGGCCTCTGAACAACAAGGGTCTGGGCGGCTT
CAGCAAGCGCGGGGTGTGCTACCTCAGCCGTGTCCCTCCCCACATGAACCCGTCGGCACG
TCCACCAGATCGTCTCGAAGTACGGCGAGGTGCAGAGGGTCTACCTCGTCCCCGAAGGTA
ATCCCCCCGTCATGAACCGAATTGGTGGCTGCGTTTTTATGCTTATAATTTGTGATGATA
TGGTACCAAAACTAAGCGTTCATTTGAGGAACACAATATGCTGAAAGCCCTACTTTTTCT
TCTGTGCGAATATGCAGAGGGCAATTCAATGATGTTAGCTAGCCTAGAAAAAAAAAGAGA
TGTTTATGTGATGTTCAAGTCTCCCTTGGATGATCAAGGAAGTTGCGTGTAATCCCGTGC
AGAGTTTCTGCTGCGAATAACATGCCTCAACGTGTGTAACAAGGCTTTATTTTGGTAGCA
GAAGGCTGTTCATGGAGTTCTAGGTTTCTTTGTCTTGCTTGTATTTGTGAAAAACATTCT
TCATTTCTTCTAGAGGAAGGGGAAAATTCAAATACAGCATGTCATCAAATGATAATCATG
TTTTGCATGCTGATTGCACATGTTGCTGCGGCAGTATACCGTGCAGTGACAGTGGGTTGT
TTTCCTGTCCCTCGTGGTTATACGTCTTAGAATGTGAAGTGCTCTACTGCTCTTTATAAT
GCTTACATATTTGTACATGAAAAGAACCCAACTTCTTAACTGTTATGTACTAACGTCATC
TCTTTCCTCCAGGTCAAGGTCATCGCAAGCATAGTAACGTAAAAGCGAAGGCTTACTCCG
AAGGGTATGTTATGGAAATGCACAGATGAGCTGCTCTGGAGAGACTTGCTAGATCCCATT
TTTTGGTTTTATGCTGAAAGTCAAACATGGAGCAATACTTACCATTGTCTACTTATTGCA
TTGCTGGAGTATTCATGTAAAGATATGGTAGATGATGTGTGGTATTTCACAGTTTTGACA
TATTCTTATTGTTCTACTTGTTACTTGTATGGCCTTAATAATGTTCCTAAAATCTTTGTA
GGTGGGTTGAGTTTGCAAAGAAAAGTGTCGCCAAGAGGGTGGCTAATCTGCTTAATGGTG
AACAATGTTTCATGTGTTTTATTCTTTCTATGTTACCGTTGGTTTACATTAGATATACTG
AACATGGATGATCTGTTCTTCCTTTTTATTGCTCAACCCTCAAACCCCTCAATTTTTTGG
CCTCAAAAGGGTTGCTTTTGTCGGCTCTGTCATGTTTGAAGAGCTATACAATGTGTGCTA
GAGAGCTCAATTATTCTTGTCTGACAATTATCGATGACCATCCGTGTTAATGATGTATTT
TATTAGGTGGGAAGAAGAGGTCGTCATTTTATTATGACATATGGAACATAAAGTATCTCA
GGAAGTTCAAATGGGATGATCTGGTTGGTGAAATAGGTATGCCTAAAGTACAAAACTGTA
AAGTAGCTATAAACTTGTCAGTAATGTGAACTGATTTGTACGTAATCTAATCCTTGGAGT
TTAATGCAGCTGAGAAGACTCATATCAGGGAACAGAAATTAACATTGGAGATAACAGCTG
CGAAGAAACAACGTGATCATTATCTCTCTAATGCTGAAAAATCTCGTACACAGAAATTTA
TTCGTGAGCGCATAAAAAAGGTGTGCTCTATTGTTCAACATACTTCTGCTAGCGTAATTC
ATGCTGGGGATTTTCTTTCTGTCCCGTGTCATCTTTGTTTATGATTACCAGACGCTTGGT
GACACATGGTTTGGTTATAGTAGGAAAAACATTTTAGTTACAAGCTAGCCAAACACTGGA
TATTTTTGTTAGGTTGATCTCTTTCCCAATGGGCCCAACGGTCCATTGGACCTTGACTCA
CGCCCTGATCGGGGGCGTCCAGCCCAAGCAAGGCTGGTG