morexGenes - Barley RNA-seq Database

Contig contig_159162
Source Contig contig_159162
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_159162 (7401 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_159162

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20748	1	989 bp	None	Available	Available	None
MLOC_20747	1	1134 bp	MLOC_20747.1	Available	Available	None
CDS Structure of MLOC_20748

CDS Structure of MLOC_20747

Contig Sequence (7401 bp)

>contig_159162 7401 assembly3_WGSMorex_rbca.fasta
GATATTTCCTATGTGTTTATGAATTAGGGACAATAAGGAATTATCATAAACACATATGAA
ATATCATAGCAGTCATGTGCATGGACGAGAGGGACAAGGGGAGTGGAAAGGGGATCTGTC
CACGAGGCAATATAGACACATGACATGGTAGTGGTCATCGCATTGTCCGGGGAGGGATCC
AAAGGGATGATTGGCTGATGCGGGTGGGTTGGCAAGTTCTGTGGCTCATGTAGGCAGGGT
GCAATGACTTAAGGAGGGATGGGTTGTCGGGATTGCACGTCTTATGGAAGGCAGATGCCA
CGTGAACCCTCACTATGTTGCGGGTGTGGAGTTGACACAATGTCACCCCTCTGTGTTGAT
GGTTCATCAGTGCACTAGCAAAATTCAAGAATGGGGCAATGGATAGTTGCTGAACATCAA
GTGTGTGTAGTTGAGTGTCGGAGAATTGCTTGGGTGAATGCTCTAAAATTTGGTGGGTGG
TGTTTGGTTGCTAAAGTGAATCTATCTACCAAATTTTAGTCATGTTCGATAAGAACGTGT
TGCAATTCATGTGCAATGGTGCATATAGGCGTAAAATTAGGTTTTGGCTGTTGAGCACAA
TTATGCACTATGGTACCCATGGTGTTGGTGTGCATGGGTGTGGTAGGTGTAGGAGAAGTT
ATGGAATTGATTTGGGACCCTTGAATCACAAGAAACTGATGTGGCTTCACAAGCTCAATG
ATAACAACACTCTTTTCATAGAAAAATAATGTTTCTTTAGGCCGAAGAACTATGAAATGG
CTAGAATAGATGTGTACTTGCTTTGGCAAGTTTATATAAACGTTGGATAACTTGGATGAA
AGAGGTAAAATGTTTGATCTCAGGTCCGAATAAACTTCCAAATCAAGATCTAACCCAAAA
TTTAAAGAGAGCCCAAATGAAACTCGGGGAAAAAGAAAGGGACAAAAATCGGGGTGTTAT
AACACACATATATGCCAACATCCATAGTTGCAAACAAAATGAATAAATCAATCTCATATT
TCTACACATATCACATACTACAATTAACTCATATCAAAACCTAAATAATTTTTGTGTGTG
TTTCACCCCAAGCAAACATTCAATCACATGCATGGCAACAAAACATCGCATCCATACATA
TGCCAACTTTGCTCAATTATTTGGTTTGCATTTTAAACAATGATATATGTACCTTCAACT
ATGCCACGATCATCACATATATGCCAAAACAACATGTCATTAATAACTGCACCTCAGAAA
ATAAATCATTCTTGTGTTTAGCTCGACATTAAAGAAACTTCTATCTATGGTCCAAGTCAA
TGGCTATAGGTGATGCAACCACACATTGTTAATCACTTCCACTAGAACAAATTACCAAAT
GAATAGGAATTACATGACCCAAATGAAAAGTTTCAACAAGACCTAGGGTTTCATCTAGTG
CTAAAGATGCATTAAAATAACAACATTTAGTTGAAATTGGGGGGAATTAGGGGAGATTAC
CTCAACCTATGTAGGGGAGGCAAGATCCATGAAAAACAAGTGAGATTTGAGGAAGATTGA
GAAAGATTTGAGCCGGGGAGAGAAAGAACTATCTATCTATCCTCTCCTCGGGGTGAATCA
GGCGTGGCTGACGGTGCCATGTACCGGGGGTAACTCGTAGACCAGAACTCGGCCCACTAG
GGGCGGTGATATATTTGGGCTACAAACCATGTAACCCGACTCAGGCATGTAACCTTACCC
CTTGTCCACTTGTATAACGAGAGGTACGGGCTTCCCGAGTCGACACACTCAATAGGCTCA
ACACGCCTCTCTTATACAAGACAATCACTATCAATACAATCATACATGCACGAGTAGGGT
ATTCTTTCACATGGAGGGTCTAAACTTGCGTAAATCCTTGTCTCGTGTGCACCCAATCTA
GTTGTCTAGGCATACTCGACTTCATGATTATTATTGCCAAAATTTAAGGGACCACTGAAC
ACGTCGGTGGCCTACCGCCAGAGGTAGCGGTGGTAAGATTGCTAGTACCGCCGGAACCAA
CAATGATAGACACTTGTCCATGTCAGTGCAATCTTGGCACCGCCGTTGACTAGCTACCAC
CCGGTTTTACGGTGGCTGCAATAAATGGTCAGAAAAAATCATTTTCAGACTAGCCTCATT
TCATGCTAACCTCACCATTAAAGGTCAAAACAGTGATTGTGGCTGTCTCTTGTGATTTCT
CGCTCCTTTCGGGGATGAGACCCACACACACACGAAATAGGCTTTCACTCGCCTTTATAG
ATAAAGCAACGATCCATATAACCACATACAAATTCAACGAGAGATCACATCCTGGGCAAC
GACACAGACTAGCCCAAAAAATGAAAAAAGCAAAAATATGAGACCCACCACGACCGCGGA
TGAAGCTAACAACAACACTCGCATATGGAGTATATATGCGGAAGGGCCACCATCCGGGCA
TGTGTTTGCGCCCACAGGACGCCTGAAAGATGATAGTCGGAGCTGGGTGTGCCTTTTCTT
TCTTGACAACAACAAATTTGTCCAATTGCAATAAGGAGAAATGAAGGTTCTGAATCTTCA
ATTGAATATGGCCATACGCTAAGAGTATCTTTTTTAGACAATTCCATGAAGCTTTATTAA
TTTGTCACAATATTTACAGGGACGGATGAAAGATTCCCGGATAACCTAATCAAACATGTG
GCAGCCACCTCCTAGGCTAAGAGCATGCTTCGCTAAATTGTGAGCTTCCAAATTCAAGCT
CCTACATTCATGAACAAAATTACATGAAGTAAAAGAAACTGAAAGTTCTATGATCTCTTG
AACTATCACACCATAGCTGGCCAAGCTACACTTTTGAATATCATCCACCACTACCTTGCA
ATCTGAGGCGACCTGGATACGTTGGATGTATAGATCCTTCGCCAACGCCAAAGCTTCCCT
AATCGCCAACTCTTCCAGGGTCGGTGGATCTAAGATAAATCTGAAAGCAAACATCGAGGC
TCCCAGGAAAGTGCCTCCATGATCCCTAGAGATCACACCAATGGACCCAAATTCATGCCT
GGAAACCGCTCCATCAGAATTGAACTTTGCATAACCTGGAGCGGTCGGGATCCAGAGTGA
CATGTTTTGTGGCGTAGTACTGGTAGGAACATATGCATTTTTTACCTTGATCTCCCGCAA
GTCCCTTAGATAAGAATTGATGAAGCCGTGTATTGTTACCGGTGACTGAAAAATATCCTC
GTGAATTGCTTTCCTCCTTGCTCCCCAGATTGCCCATAGAGTTATCACTAGTCGAACAAA
ATCATCTTCGGCCAATATCTCATTTAAGGCAAAGATCCAATCCTTGGCGCTACCCTTCAT
GTGAGCACTCATTATCTCCACTATATGATTAGGTGCTAGCATCTAAACACTACCTTCCAT
TGGGCAGGATAGTAGTGCATGTCGTCATGTATCTCGAGCACCACAGAGAGCACACGTGTC
GATTGTCGCCATATTCCGATGCTGCAGCAGAACCCCGCGTGGAATGCATTGTCTTGCAAA
TCTCCAAACGAACACCCGAAGTTTTGAGGGAATCTTGATGTGCCAAATAGATGACCGCCG
ATTGTTCTCCGACTGATTCACCGATGTGCCAGACTGCTCATCAATCCAGCCCTCTCTACT
GAGTTTAGTATGCAAGACCATTCAATATGCCGGTGGGACGGTGAATATCCCCTTGCTATC
CTCATGCCAAGCCCAAAAATCTGATACTGTTCGCGTACATAGTGGTACCTTGAGGATCTC
CTCCGCATCAAAATGTGTAAAGGCGTTCCTAACCATGTTTTCATTTCAGGAGGCATTTGT
GGTGTCTATGAGCTGAGCAACCAAGTCCGGAGGGTTAGTTACCATAAAGGTAATAGGCCG
TTTGAAGCTGTCCCGTGGTATCGAGTTATGTGTCCAAATAGTTGTTATCGCCCCGTCCCC
AATCCTTCAAATAATCCCTTATGACAGGATATCTCGACCATCCAAAATTACCCGCCAAAT
CTGAGAAAGATGGGCTCCCAACTGTGCCTCTAACAAGTTACAACTAGGAGAATAAACCGC
CTTCAGCATTCGGACGCTTAGCAAGGTGTCATTAATCATTACCCTAAGAGTATCTACAGC
TGGGAAAGACAAATCCGTGTCTTCATACGTCCGCGGACAATTTCAGGCTGGCCTCAAAAA
ATTTCATTTACAATCACAAACCCTATATTTAAAACACCTAACACAAACATGTAGATCATT
TTAGATGTTTTAGTTTGTGTTGAGCTGGCTTGGTTACCAAAAAGTTATTCATGTTGGGCC
GACATGCTTTTGGTTTTTAGTCCCACCTTACCGTCGGAGGAGCACCGCACCCGGCTTGAA
TAGCGGCGTCGGGCAAAAGCGTTATGCTACTCTCTCTTAACAGGGGTCACCAATGCTCGC
TTTGTCAAAGAGCTCATTTCCTTCACAAGACGAGGATTGATGAACACTACTAAGTGAGAA
AGTTTTTAATAATTTCATCAAGCTCCTACGAAAAAATCACAAAAAAGCTAGTCAAACAAT
CAGCCATACACAGTACGCAAGGTGTGGTCTAATGCAAGTGAAATCGGGTATGTCTAAAGA
GATTTGATGGGATCAAAGGGTTCGTCTAGCCCGAGCAGCTCTATATATGAGATACATATA
CGTTTGAGGCTGATTTGAAGCGTTCTCCTGAACCGATTTTTATGAGCGGTCAGTGACCGG
GCCGTTCGACCCGGCGATGGGTTTGAGGCGACCGGGGGTGTAGGTGCTCTAAGTTGGACA
AATAGATATAATTGCATCCTCAAGATCAAAATATAGGCAAGAGGACGCATGTGAACGAGA
CAGAGAAAAGCAGCAACTTGCAATCATCGACCGCACAACCCGGAGAAAACATCAACGTTC
TGCATTATCAACGGCCACCAGACTTGGTTTTAAATACGCAAGGATAAACGAAGAATGGAT
CACAGAAGAACGGACGCCTTTCTGAGTCTAGTAGGCCGATCCAAGCTAGGCGCGGCCGTA
CGTTTAGGCTCCGTTCAGTTCACCACGGTGGCGTTTCACCGTCTGCAAGCGAAGACGAGC
TGGAGACGGCGATGTGACGCCGACATGGCGAGGTCCACTTTGTTTCTTCCTTGGCTGCGG
CTGGTGCCTGGCTGGCTTTCTGCCTGCTGAATATTTTCCCTCTTCTCCACCTTCCACGAG
CCTGAGGAGAAGACCTGCATTGCGTCCCGGGTCGTCGCCTCGTGGTCGTGGGCTCCTTGG
TGGCTACATATTCTTTTCGGACTGAATTATTGCCAGCCTGGGGGGAAAGCATCCCCATTT
CTCTATCATCTCTGGCGCTCCTACCGAAGTGTACTAGAAAGTAATAGCAGCGACCTGATT
ATATAGCACGTCGGGCTGGTCGTCGTCTCGTCTCGCCGGGAGAGGATAGGCACGGGACAG
GGCGGAGAGAGGAAGCACAGCTGATCGCAGCCGGAGAACCGCCCATCCGCCATGAGCGAC
GGACAGGGCAATGCTCCTCCTGGAGGTACGTATCCATCCGCTGTCCCCATAGCTTTCTCG
CTCTGCTCTGTGTGAAATGAAAGCTTGGTCAACTCGTCGATCCACCTCTGGGAGAGACGG
AGCGGTGGATTAATTAGCACAACCATGTGTTAAATCTGATGCCGGAACCAAGATTTCGGT
CGCCTCCCTCAGTTCCATCGACCTTTGCCGGCTGTTTTGCTAAAATAAATCCGGTGCTTG
TGTGTGGCTACTGTAGGCTACTTCATCGGCCGTCCGGCAAACACCGACGAGCCCAAGGAG
AAAGAACCGCCGCAGGCCCTCCCTGAGCCTGCTCCGGCTGTGAACAATCTTCCTGGTGGT
AAGTGCGCGCAACGCTTTGATTATGTGTTATGTAAACCATGATTTTGTTAGTAAATCTCT
GTTCGTCTTCTGTTGCTCAAACAAGATTACTTCGTCGGCCGCCCGTCAAACCACGAGCAG
AACACGACGCCGCCGCCGCCTAAACCGAGCTTCTTGGCCAAATTGTACGACAGCTTGTAC
ATATATTTCAGCAAATTACTTAGAGCTAAAACGCTCGAGCTGTGTCTAATGCTTCTGCTT
TCGTCTCCGTCTCCGATCTCCAGCTGTCCATGCCTCGCCGGCGGTGGAGCTACCAGCTAG
ACCGACAAGCCCAGCCGTGGTGAGCCGTGCACGTGACCGCGGGAGGATTTGAGGCGGAAT
CGGGTCCATAAGTCTCAATTCTGTATTGGAACCGTGCGAGTCTCTTCATCTTTGGAAGCT
CTGCTCTGTTTTTCTTTCCTCCTCTAGCATTTGATTCCGACGTATTCATTCGTGTAATGC
CGACAATCGTAAACTCGACGAAATTGCCATCCGTCCTTGTGAAATGATGTTGATTTGTTC
AATTGTATATACTGTGTACTGATGTGGACTGTGGATCTATCGAAGTAGCGCGTTTGCGTG
TACAAACAAATCTCTACCGAAACAATTCGTGTATTTCACAGCAACATACACCTCGGCAAA
ATCGACAAATTTAACCAAAAAATCATAAACTGGAGTGCGTTTAAATTTTTTCCGTCCGGC
TGATCCTTTTGAATGGCGTCCGACACTTCAGCGCGGCATATACTGTGTGACGACTTAGCC
GTAGGCGTCACATCCTCGGCCACGCTGGCGTCCGACCCCACTCCATCCCAGCAATGTGGC
GCCTTAGCCGCTGGTGTTGCACTTCCGATGTATGGTGTCGAGAACTTAGGCATTGCACTT
TCGATGTATGGTGCCGAGAGCTTAGGCGCCACACTGCCACTTATCCAACCGCGGGCCGGG
TCTTCCCTCACCCCTCTCCTCATTCACCTCCATCACCAGAACACAGAGATGCCTCCCTCG
AGTTCCCCTCTCCCCCTTCCTCAAATCCCTCTCCAAATCAAGCAGATCTGAAGGTTTGGT
CTGGACATTTCGTCTTCAATCCCTCCCTTAAGGTAATTTCCCCCAATCCCCTCTCTCTCA
TCCAAAAAAAATCTCATTTGCTCACTTTTTTGCAAATGTGAGCGAACCTCTTTTGACCCA
ACAATCCAGGACAACATTGACGCAGAATTCGAAGATCCAACATGAACCATTGCTAGAGGA
GAATAATGAGCATGATGATGATGAGAATAATGATATTGTTCTCCATGACAACAGCCTTGA
TGATTTGGACAAATAAATTTGCAAGAGACAATGGACCATTCAATTCCGTACTCACGTGGC
TATGCATCGGAGTCGCACGATGACGGTCCCGGTGAAGAAGTTGATGAGTGATATGTCTCC
AATGTATCTANNNNNNNNNNNNNTTCCATGCTATTATATTATCAACTCGGGATGTCTTAT
ATACCATTTTATATCATTTTT