Contig Data
morexGenes
Links



Map Locations of contig_159147 (7513 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_159147

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_20713 2 2342 bp MLOC_20713.2 Available Available LOC_Os03g11614.1, FRAME:+3, EVALUE:1e-20, 13103.m01314 protein OsMADS1 - MADS-box family gene with MIKCc type-box, expressed





CDS Structure of MLOC_20713






Contig Sequence (7513 bp)

>contig_159147 7513 assembly3_WGSMorex_rbca.fasta
CGGAGCCGGCGCAGGCTTTGCTGGCCGCTCCTCAGGTGGCGGCGAGGGGGGAGGGGAGGT
GGGGTGGGGTTGGAGGCGCCCGATCTGTGTCATCTGGTCTTAGTTAATTAGATTTTAGAT
TTGATCCCTACAAATCTAAAAGGAGGGAGTAACAAGCAAAAGGGCCGGTGACCAAGCACA
GCGCGTCAGCGCGCAAAAGAAAGCAAGAGCCAGAGGAAATTTTAAAATAGTTCAGAGAGC
TGGAAAATTGAAGATACTCCAAATAAAGAGAGCTGAGAAAGTAAAGATAGTAAAAGAAAA
ATTCAGAAAGCTGACAGGAAAGAGAAGTCCTACGAAGCCCTAGAAAGGTACCAGTAGCTG
CGATGCAATAATGAACTCGTGTCCTTCCTCCACACGGCCGTCGACACGTGCCACGTTCTT
TTCCCCATCCATTTGCACGTCTGCTGTCTGACGTGCGCCCTTACTGCCCCGTGCGGGTAC
ATATACGGAGATAAGCTTTGCCCCCATTATCCTCCTGGCAGTGGAGATGGATTCCGGTCC
GGATCGGCACTGTTGCATCTCGACCGAGGGGCCGAGTCAGCTACGAACTAACCTCACATC
AAATCATCAGTCATGGCAACTCCGACGCACGATTCGGATGTGTCCGTTTGAATTCAAATG
GACAGACCACGCGGCTCAACACATGGCAGTATCCGTAAATAATTGTCAGTTTCGCGTCCC
GGCTGTTCAATTTTCAGAGCATATATATTTGTTTCTAGTTTACGTTCAGACAAACAGCAA
ACGGGCACACGCACACGTCAGCTTTTGGGGCATGTACAATAATGACATACGGTGATATGG
ATATAGATGTTTCATGATAAAATGTAATTTAAGATATCTATATTGATTTTTTCTCTTCAA
TGCAAGCTATCATTAATGGATTTCATCAACGAATAAAAAATAAAGACTAATACACATGCA
TCTTTACTTTTCATTCTAACTTTTTTAGTTTTTTACATCGAACCATACTTTTTCTCTTCA
AGCACCCACCTCGTGCAAAGAATCGATATCCCGTTTTTTCATCCGAACCTACTTTTTGTG
ACATCCGATCCTACATGACATACGAGGCATCAACCTGGGGCTATGCATTATACATGCCCT
TATCTGTGTCGGGCCCGCGTGGCGGCCGACAACCTACCTCCCACCATCCAAATTTACTCC
GCACGCGCGGGAGGCCCTGCTTGTCAGCCACCCAGCTGCCCCGATCATCGTCCTTCTTAA
TATGGAAGCCGTGGCACAACTTGCACACTCGAGCCCGCATGCTTCATTGAGCCCCTACAC
GAGTGAAATAAGCCAAACTCTAGCCTCCCTTCCTCTTCATCTCGTCGCAACTATGGGATG
TAGCATTTGCTCGGCAAGGGGAAGCACGATTATGAAGCCGGCTTGTCGGCTTGTCATGCG
GTCGTCGCCGCTTCACCAGCTCTGCGCAATCCGCTCCCCTACGTTTGCCATCTTGCCACC
GGGGGCGTCGCATCGTAGTCGGCCCTACAATGACGCATATATCTGCCAGCGCTGTTAGGG
GAGGTGTGCGATGCCATTGTCGTAAAGAGATGACCACCCCTTCCGTGGGGAGCTGCATAT
CTTCACGGATCGGGTGCCGATCACACCGATCCTGATAAGCGTCCGCGCTCGCCATGAAGA
GATCGATCAGCGTCGGGTTTGGACACCAGCGCCGCCGCGGTCACCTAACCCGTCCCTCCC
ATGCGAAGAGGTGGTGCAGGCGCCCATGCAACCACCGCAGGTGCCTCCGCCCATGCAGCC
AGCGCAGGCGCCACTGGCCCACCTTTGGATATTACCATCATACGTCCACCTCACTATGAG
TGACGACGAGAATGATGGAGCGTGGAGACAACGGCGGGATCCAATGCAAGACGACCACGA
CCATGGCGGCTATCTTTCTTTTAAAGTTTATGTTATCTTTAAATGTGCGTCCGGAAACTA
GTTAAACAGTTTACATTTATATCAATATTTAGTTCTGTTTTTGCGTATTTTTTAAATGTA
TGAACTCTTTTTTTCTTTTTTCAAATTGATGGTATGCAATGCGAACATATTAGAATGCGG
CCGCACGTTGGGTGCATCAATCGGCCGACGAACAAAACCAGACTCGGACTTCCATTTTAC
CTTTCAAAACGAATGAAATTTGGATCAAACGAACATTCGTTTAGTGTACACGGTTCAAAA
ATGCTAGACATACAAAGAGTTACACAAGGTTACACGCTGACTAGGACTTTTTTTTCTAAC
TAACCACTCTTCCCTGATTTTCAAAGGAGTGGGCCCTCATCCTTTTTAATCTTGAGTTAA
AATTCACCTGTTTGTAAAATTCATAAAAAGTTATATATGTGTAGCATTGCCCGTAGACGG
TTGGAGTTCGCCTCACCCCCTCCCACGGAAACCTTCCCCGGAGCTACAGTACACAGATAG
AGACTCAAACGGGTGGGAAGTGGGTACTAGTGATCGGTGGTGATTGACAGCCGATAGGTG
AGAGATTGGGTCGAAGTGGAACCAGGCATTTCTAGAGAGAGCGAGAAAGACTTATAGCAC
CGAGCAAGCAAAGCATACGAGCAGACATCCCTCTGCTGGCGGCAAAGGAAGTAACAGTAG
AGAACACGGAAAGAGAGAAAAAAAAGGGAGGAAGAAGAAGACAGATGGGTCGCGGGAAGG
TGGTGATGAGGCGGATCGAGGACAAGATAAGCCGGCAGGTGACGTTCACCAAGCGTAGGA
ACGGGCTGCTCAAGAAAGCCTACGAGCTCTCGCTGCTCTGCGACGCCGAGGTTGGCCTCA
TCATCTTCTCCGGCCGCGGCCGCCTTTTCGAGTTCTCAAGTTCCTCATGGTACGTAACTA
AACCAGCGCTCTTTGCTCCGGCATAGATCGGCCACCTCCAGAGTCTTCTTCCACCTAGTT
TGGCGCAGGTTCCATGGTCAAATCGATTCGGTTTAGGTTAATTCAGATCCGCGGCTCTCT
CTCTCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCGGTTTTGACCCTATCTGTT
CATCATCTTTTCCCGTCTCTTCTGGTCTACCTTGATCAATGGGTTAATTAAGATCTGACC
AACTAAACCTCTGATTTTCTTACCTTCAGTTCAGTCAAGCAAGAAACATGACAAAACACC
CTTCTATATTCTCCAACAAAAGTGACGAGTGCCCTTACTTTTCTTTTGTGGAGTATATTG
CAGCTGTGAAAAGGTCAACTGAAGCAGATAGTGTTAAAGCATCGGATCTGTTTACCACAT
TAATCCTGAGGTTTCAGTTCGCGACAGGTAGAGGTAGTTATATGTGCAGCACATGCATGT
AACTATATCATAGTTACTTGCCTTACTTGCTATAATCGGCAAGAACATGAAAGAGTTAAA
GAGGTCCATCAAGTTGCTGCTTATTATTCCTTTAATATTTAGAGCATGTTTCGCTGGCCC
GTGCTCTACTCGCAAGATCTCCATCTCCTCCCGTATATGCTCATCAGATCATATATTTCT
CATCTAAAATGGTAAATCCAGTACACGTACTGATGTGAGATCTGTGGCTTGACAACTCTC
TAGGATTGTAGACAGCTTGGCTTGATGTGGTGAGATCTGTGATCCATTTTGTTGCCGCGT
TAGTTACTGTTCCATTGAGGGCAGCAGCAGCACGATCCCCGGAAGTTCATCTATCTTCAT
TGAGCCCCGTGTAGGTAGAACTCCTTTTTTGCTTGCACTGACTGCCGAACAGTACGCCGT
GGATGTGAAGTGAACTTTCTCAGCACACGTCATGTCAACGAATGAACAAGCAACCCATAG
CTTGCATGCAATATACGATGGGAGCAGTAATGCAGTATTACACCCATGTGCAAAACTGGG
TGAACTGATGCATACACAGTATATTAAGTTATGTATGTCTTCATGCATGTGAGAAAATTA
ATGTGTAGACGAATGTACTAACTTTCGCTCTCTCACGATCGAGGATCGTATTTCTTGGAG
CAATTATGTTCTAGCAGATCGTGTACGTTTTTGTGAAAAGAAATTTACGGATACTGAACT
AGACTTAAACGTACTATAACCTTGCTGCAGAATGTTTTAGCTAGCGTCATAAAGCACAAA
GCTTACTGCCAATAAAGGCTCGCCTACCTAAATTATCTTCGGCATACAATGCAAGCCGGC
TGGATGGCCCACCGACCTCGTTGGATACGAGCACGAGCGAGGCACCTCACTGCTCCAGCT
CCCTCGCCTCCCACGCCCAGCCCGACGAAGCCGGTTGTCGCCTCAAGACAGCGCATGGTT
CAGAAACTCACCGCACGAAGCCAGCTCGATGAGGAGTAGCGAGTGCATGCGACCGCGCTA
TACGTCATCGACGTGCTCGTAGCCACGCCATGCAGGCACAGAAGGAAGCCGGCTGCACGG
AGAGTGACGAGCGCGACGACGCCCACCACCATCATGGAGGAGAAGTAGAACACGGAAAGC
CCCCGCCACTCAGGTTCCATGAAGGCCGCCAACGGGGCGACATCGGCGTACGCAGCCAGT
GTCTTGCTTGGTTCTTCTCTTGCCAGGACCTTCGTCGATCCCGCATGGACTTCACGGAAG
CGGGGGTGTCTGCTTCCCATCCCGTTGAAGCATCGGACGGGGGTTCTGCTCCGACGAGTG
GTGGGAAAGCGAGTCGTTCTTTGTGCTGAAGCATTTGCCTCCAGAGATCCCGGCAGTCCG
GTGAACAGGCTGTTAGACATGGGGAAGACACAAGGATCTACCGTGGTCGGTTGTAGACTA
GTGTAGTAGCGTATCCGAGTCGTGGGAGTGGAGCTCCGCGCAACCGTAACGTGCACATAG
TCTTACCTTTTTAATTAAAATATGTTCAAATATAATGAAATCCATCTTGTTAGTATGAAA
TCCACTGTGTTTGCATAAAATTCGCTCGTGTTTGCATGAATTTCGTTCAATTGGTTGGAG
TTGTTGTTAAAATGTATGCGGCCAACGTTGAATGACTTGTGTCCGCTGACTGATTCCCCC
CTGTTCGTGGACAGATGCAAAAGAAAATTTACGAGCTGTCGTTGGATCGAGATGTCCTAA
GCCAGCTAAAAACATCTTTAATTTGTTCCCATTGAGTTGAGCATTTGCAAATTGCCCATA
GTCCCCGACTCTATTAATATAGGACAACAATAGGTCGTTGAAACACAATATATCTCCATC
CTGATTTATTGGTCCACTTCGTATTTTATGGTAAATTTTGATTATAGATTTGACAAACAT
AAAGCTAATGCGCATCGCCATCAATAAAAATATATCATTGGATTCTTATTTGAACATAGT
TTTCAATTAAATTCTTTTTTATGACATGCATTAACATTTTGTTGATTAAATCTAAGATCA
AAGTTTGGCACATAATACAAAAAAGACCAATAAATCAGGACGAAACTAGTATTAGGTTGG
TCTAAGCCCATCACCTATCGAATAAAAATATGCTTACTTGTAGCAATCTTGAAAATATGT
CGGTATTGAAATTGTAGATATCGTCCCCACTATTTACCCATTTCATTGTCACCTAGCCTT
CTATCCCAATCTATCCCAAAACTAGATATCGTCCCCACTATTTACCCATATCAAGACGCA
CCGAAACAATAGGGATTTAAGCTTCTTGAGGAAAAAATGTGAATTCCTTGCCTTTCCAGG
AGTCTACTAGCAAGGGCTTGCTACGAAGAATTTAAATCTTGTCGCACACCTCCATCAAGC
AACTTTTAAATGTTATTTCCTCAAGAGAAATTGGATTTTTTTATATTTATATCTATAGCA
AAATATAGTGTCACAATAACTTCAAATATCACCCATTCAATATGCTCCATCTAATGGTTG
AGAGATGGCAAATCCGAACAATACCATCCGTTTCATAAAGGCTTCATCTCACAAAAATTC
TGACAGATGGCATTTTAATTGAACCCCCGCTCCATCTTCTCATAGTATTCTAGAAGCATT
GTTTTCCCATGCCAAGAATTTTAGTCTTCAATAGTAAAGGAGATAGACCAGTCTAGAATC
CAGTGAGTTGGGCTCTGTCTAATACCGTTCTCATGGAATGAAATAAAATGTCGAGAATAT
GTTTTCCCCCTGTTGTTATATTTCATGACAGGCAAAGCACGCACAATTTACTAGCAATGA
TTAAATCTTGAATATCTAGGATCCCTTGCTCTTTTGGGCTGCAAAGAATACTCCATTTAA
CCAATCTAAACTTCCATTTTGAACTGCAACTTCGTCAGAAAAATCTAGATCAAAAACAAC
CTAAGCTTTTACGGGCTCACACCGGCAATCCAAAAAGCGACAACAAAAATAGAGGCATGC
TGGTGAGTACCACATTAATTAGCACTGGAAGCCTATCCAGTGATAACTTTTCACCCTTCG
AGTAATTCGGTTTGCACTTCTAACCATCAGACCTTTACATCACTATTCTGCAATTTTCCA
TAGTGTATTAGGGATACCAAAGTAAGTGAAAGAAAAGGTGACAATATCACAACGCAAGAG
CTATGTGTATTGATCCTCCACCTCCTTAGACTCCTCAAAGCAATAAATATTACTTCCTCC
GTTCCTAAATATAAGACCTTTTAGAAATTGCACTATAGACTACATACAAAGCAAAATGGA
TGAATCTACATTTAAAAGATGTCTATATANNNNNNNATGTAGTTCATAGTGTAATCTCTA
AAANNNNNNNTATTTAGGAACGAAGGGAGTACTCAAGAAAATTGATTTTTTATCCTAATT
GTTCACGAAGATTGAATTCAAATTCTTAGCACATACAAGAGATATATTTCGAAGATTTGG
TATACACTATGTAGCAAGCTCTACTAGGCCTAAGGGCGCGCATGAGGCAATTCTGAACAT
ATGTATGCTTCGGATTTCTTTTATAGTTAAAGCCTAGTGGAGTGCCAATGGAACATAAGA
ATTATCGCCCGCTCAGATCAAGGTTGTCGGGCCTAACATGCTTGTACCATCGGCTACTAA
AGCAAAACATGACCGAGGGCCACCTGCAGTTGGATCATATTGTCCTTGGCCTAGATTGTG
CCATTGGATTATTTTGATCTATATCTTTCTCTACCACCAGATGTTATCAATGAATGTTAG
CACAGGCCCGACCTCGCTGCTGCAATCCGTCATGTACTTTCTAGCGATACACGCGTACGA
GAGTAGCTCGAGTACTTTCCGAGCTAATCGATTTGTGTCGGAGACGTAGACGTAGACGCT
GACGGTGTGCACACATACACGAAGCAAGCAGGCAGCCTGGTTGATGGATTCCTCGCGTAT
GTAACTAGCTATGTAACCAGCACAACGCACAAAGAAAAAATCCAGCCGCCGGCAGCTTTG
ATCACGCACACACCGGAATACGCGAGGGCACGAGAGCTTATGGCTACAGGAGCGATGATT
CTCTATTACTTTGATCTGATTTGAGTTACAAGGGGTACATAGAATTTTATAGTAGAAGCT
AACCTGCCAACTA