morexGenes - Barley RNA-seq Database

Contig contig_159139
Source Contig contig_159139
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_159139 (7704 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_159139

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20696	2	846 bp	MLOC_20696.2	Available	Available	None
MLOC_20697	2	1282 bp	MLOC_20697.1	Available	Available	LOC_Os05g43680.1, FRAME:-1, EVALUE:3e-56, 13105.m04604 protein expressed protein
CDS Structure of MLOC_20696

CDS Structure of MLOC_20697

Contig Sequence (7704 bp)

>contig_159139 7704 assembly3_WGSMorex_rbca.fasta
GAACCGCCCAGGATGAGGCCCAACTAGCCCTAAAGGATGAATCGCCTTACTAGTAACCCG
GCCCATATTCGGCNNNNNACTTAACAGGCAATATCCCCAACAACCATGGTAATTCTTGGC
ATGAAGATGACGACTTGTATTGTGAAGATGAGGAAGAAGAGGTCGACATTTCGGCGGAAC
CGATGGTGTTCATCAACGAGCTCACCCAAAGGTCCTAGGCACAAAAGAGGAGGCAAAGCC
TTCGCACGAGATCATACACTCAATTTGAGGACAAATTGATTTGTGAAAGTTGGATGCAGA
TAGGACAAGATCCTACAAAGGTGCTCAAAAAAAGGTTTCGTCTTTTGAACGAGAGTTCAC
AACACTTTTCATGAATGAAGGAAGTTTCCCCCTACCAATTTGCAAGCACACGCGACATAA
TTCAATCCAAAATAGATGGAGGGTTCATCCAACAAGAGTGAAACAAAATATTGTGCCGCA
CTTGAGAGAGTTCAAGCCTGTCCCGTGAGTGGCCTAGGCATTGGTGACTTGGTATTAACC
TCTCGTTTTTTGTCCTGTCTGCATTCATGTTGCCATGCAATTTATGTTTTTATGTATTAT
GTGTCCTAGCATGTTACAATTGTGGCCGCTTCTTTGGTTGTGTAGGCATTACAATCTTCG
GAAGCCTTCAAGGCCCGGCACAAGGACAAGTCGTTTACTCTCACGCATTGTTGGGCGCTC
ATCAAAGATTGACCTAAGTTCAAAGACCAATATGTCGTTCGTAAGAAGAAAGGAGGGAAG
ACGGTCGTGGCTGGCGAGGAAGACTTGCTCAAGAGGTCGAGGGGGGAAGACAAGCTCAAA
GGGCGATGAGAAGCATGATGTGGCTTCTATAGCCTTGCAAGGAACATTGGAGAACATGAT
GAGCGAAAAGGAAGTGAGGGAAGCGAGGAGAAGCAAATGAAGATCTACCTAGACCTTCAA
ACGAAGAAGATTGAGATGGAGGAATCCATGAAGAGGAGGAAGCTTAACAACGAGGAGACC
GCTCAACTAAAGAAACTTGAGATCGAGGCAGCCAATGCCGAGACCAAAGCAAAAGAGGTG
GCACTCGCCTTCATGAGTGTCGACAAGAACAACATGGAACTGGCAGAGGGAGATGTTCGC
TCGCGATGGCCTGAACTAGTTCAGACCTCGGCCATGACCGATGTCCATTTTGAAGGCTGG
CTAGTGTGCCGACCACTGGCTTTGTTGTCGGCGTTAAAAACTTGTCCATTTTAAAGGCTG
GCTCGTGTGTCGACCACTAGCTTTGTTGCCGGTCTTAAAAAGTTATCCATTTTAAAGGCT
GGCTAGTGTGCCACTCGCAGACTTTATTGTCGGCGTGAAACTAGGGTGATCATTATGTAG
GCCACCGGCTTTGTTACCGGCCGACATGATGAACTGGCAAGAACACGCGCTAGCATGAAC
TATCCACAAATACTGTGGTCTTTTCATATTTGATCGAAATGCGTTTACACGTCGAACGCA
CGGTTACCACATCCATAAATCCGGGTGAACACGGTCCTATTATCATCCTCAAACGAACGA
AAAACAGACAAAACAAACATCTGTTTGGTGTCGTGTGTTGAAGTTGGCCTTAGATCGCCA
GGTTACGAAATGCAGAAATAGGAAAAGTACTGCAACAGTAGTGCCTCCAATCCTACATGA
TTGAGTTTCAAAAAAGAGGTTGCACTGGATGTTCAGATTTCTATGGAATGCATTGCAATG
GAACTTGAGTGCTACCATTCGTTTGATTCCAAGGTAATCCCCTAATCTAATCCTCCTAGG
AGAGAAATTCTTAGTCAGGGCCTACAAGATTTATCTGGACCAACCTTGCTGATTGCTGAA
CAACGAGTGAGCAGGCGGCAGATTTTTGCCAGCTGCTGAGGTTTGCAGGGTGATCGCAGC
CAAAGATGCCACAGCCACAGGATCAACCCCAGGCACACCACGGGGACACCGATCGGCAGA
CTGCTTTCAGTTTCAGCTAACAACGGACTGACGACGCAAAGGGAACAACCGAAGCAAAGC
ACACGATTCTGAACCTAAATGAGCAGACTCGTAACAGTTCATCGGGAGCATAACAAAAGC
TGTACAACAGCACAGGTCAAGTGAGTGAACGCCAACCAGCAATCAACACAGCTCATCAGC
AGCATATATATAGGTGTTCTATTCCAGGCTTCTAGGGGCTCTAGGGCAAAGACTACAGAG
GAAAAGAACACAAAGAAACAGCTAACACGCCCGTCATTCTTCCTTCTTGAAAAAACTGTC
CGGCAAGGCGAATTCTTCCGTCTGGCCGAAGTTCTCCTTCTCGTCGTCGTCTGGTTTCTG
CATTTGGTTTAAACAAAAACTGTGTGTGAAAATCAACATCCATACTGCCAAGGCTAAGAA
ACAAAAACAAAAGGATGAAAGCAAGCATGTCTTGAAAACACAAACTCTCATCGAGTCGTG
GCGTTGCGTCGATGCAAAACAATCACAGAGCTAAAAGAGGAGTAGCAACAAAGTAATCCA
AATCGACGAGTGTTCCACTCACCAGCATTTCTAGGTTGAAGAAGCGGTCCAGCAGTTGCA
AAACTTCATCCGCGGAGAATTGCCTGTCGAGGCTGAAAGAATTCATAGGTTGTTGTCAGC
CAAGATCCCGCTATTTCATGAAAGTGCAAACTGAAGAATTCTCATGTGGTCACCTTTTTC
TCAAGTATTCCATGAGGCCGTAGAGAATGAAGTGACGATGAATGCCTATAAGACACAAGC
TTTAGAATGCATACTGAACAAGAATATAAACAAAATTCTCATCACCATTTCAACACTTGA
ATGCAAGAAAGATCCGCAAAACAATTTGTTGCCAAAACTTCCTGAGCCAAGGCAGGACAC
AGGGTCAGTGTGCAAAGCCTTGTAACACTGTGAATTGAGCTAGTTCTGTGTTCGATTTTT
TTTCCTGGAGTTCTTTTGCTATATTCACCTTGTATGCATTAGCATTGACATGTTAACAAA
AATAGCACACACTCAAAGTCATTCTCATTCTTTATTTCTGCGTGCTATTTAGCACCCAGT
TAACTCTGTAAATTCTACTTTGTGACATAGGGGCGCTCTGTAACTTCTAATTTTGTGACA
GATCTGAAAGCCAACTCTGTAAATTCTACTTTTATGACAGATCTGAAAACGCTCCTAAGA
AATCCATACTCAATACTTTCTAATTGCATGCACTCAAGCAACTATCTATGCCAGCTAGAG
CAAGCTGAGTACAGCTTTCAACAGATAGTTGGCTGCCCTTCTGAAAGAAGCAAGCATCTT
ATGCATACAGCTATACCCCATTATATATGGACGGATGGCTGTCTTCCTCCATGGTTGCTG
GCCCCCATGACAGAGTGCAATTAAAAGACTAATGAATGACTACACACTCCCTAAAACCTC
ATCAAATCAAGCAATCAAGACCAAACCCAACAAAAGAAAAGAGGTGTCAGAATCTTCTTA
GTTTCTTCGGTTCTCTATGCTACATAATATTTGTAAGTATGAACGTACTATTCCTAAATA
ATCATGCACTCATTTCGGGCTGTGAAATAAGATCTCCAAAATGTAGCAACATTGTGAAAC
AACAACAGTGCAGCTTGTGTGTGCCATGCTAGTAAGCAGAAGTGGCGACGAAGTCTACGC
TAATTGCTACAGGGTGATTAAAAGTTGGGCCCAGCAATTCTAGTTAGAGAAAGGATTATG
CAAAGGCTTTGTAGTGTACTGACTTTGTGAAATGAGGACAGTACGCCATGTTTTGTGTGT
TCCAGTTTTGCTGTTAAAGTTGGTAAGTAATGGTAGACTAATCCACATTTCAGTTGTTAG
TGGTTGGAGCTTCAAGCCTTCAACTGTCATCACACCAGAAATCTAATGATAAAACAGTGC
TCCTAAAATAGATTCCACACTGGAACCATCAAGCAGGTACTCCCTCCGTTCCGTATTAAG
TGTCACTGATTTAGTACAAAGTTGTACTAAATCAGCGGCACTTAATATGAACGGAGGGAG
TAAATTACAATATATGGTTGGCTCTTAAGCGTGACCAAGAAGGCTTTATCTCCAGAATCT
ACTCAGCTAAATGCGGGTTTGGATTTGTTTTGGCAAAGGAAAAGACCATGAGTATTTAGT
GGTTTCCCCATTTTTCGCAACAGGACCATACCGGACACCTGTGCAGCATGTTCGACTGCA
CAGGGGGCCCCAAATAGGCAAGGCCCCAATTTTTTACTAGTATGTAACACTAATTGTAAT
GACTAATCAATGCATTTGACTAGTTGGGAACCTGCACTCTAGTTACACCTAGGACTTCAT
CTCACACACGCCTCTCCTCCTTCATATTCTCTTTCTCTTTCTCTCTATTCTCTTTAACTT
CCAATGACCCATGCAAATCCATTCCTCCATCGGAACTATCATGGATTAATTCCTTTGCAG
CTTTGCCAAAATAAAACCATGGTTGGAATGTATATGCTCACTACACTTTAATCTGCTTCT
TCAGATTCCATTGCTGCTTGCTACCTACACTGTGACCTGGATACGCCAATTGGAGTTGGA
GGCCAGGCCCGAGGCGCTTGCCCGGCGGGACCTTGAACCAGACTACCAGACGCATTGTGC
CAGCCGCCCTATGGTCTTCTTCCCAAATATAAATCAAAGTTCGTTCCATCCCTTTTTTTT
CTATGTTCTATTTTTAATACAAAATAAGTTTATATAGTGAACTAATCACTCAAACTCGAA
AAGATGCCCTTGATAAGTTTTTTACCAAAAGAATCAAATTACATTTTGGAGGACATTGCA
TACGAAAAATAGCATGAAGATTTTGTATCAAAGGAATGCTAGAAGAATGGCACGTTTTGT
GCTAAATAATGTACTAATTCCGAGTTTTGAGAATAGCTTTCTTATAAGATGTGTACTTCA
GCTACGTAGCAACAAGATACATATATATTATACTGCTAATTTTGTTTTGAGAATCACTAT
TTGATAAGAACCACTTCCTTTCTTCTAAAATCCTGTTTTCCTAATTGTCAATGGATGTAT
GAAGGGCATAATTTTTGATTTGGGACAGGGCCCCCAATTTTCTTGGGTATGGCCACACCA
GCGATGATACGAGAGGTTCTGCAGGGTTACACAGCTCGTCTCAAATTGTGTATTTAATCT
ATACCATCATGTATTCACACAGAGGTCCATCATTCTCACATATGCTAACATAAATAAGGC
ATCCAAGTCAGCCTACTTTTTTGCTATGATGAGTCGTGCCGTCGACTGAATGTATGTAAC
GTTATGGTTTTTACGGTCAGGGTTTCTAATGAGAAGGGACATGGTACTACACTACTATGG
AGGCTAAATCGTTGTTTTCTCTTCCAGTGCCCCTCAGCTTCGCTATCCACAAGACAAATC
CAACTACTTGTGTAGCATAGGTGACAGTCTAGTCAGTCAAAAAGAGGAGATAGATGCGTT
CCTGGTATCCGCTACAGCACACAAACCACCACCGAAATTGACGCGGGGGAGCAAGGCTAG
GGCGAAACATCGCACCTTTCAGTTTGGAGGGAGGGTAGAACTCGAGGGCCTGGAGCAGCC
TCAGCTCCAGCTCCACCTGCGACTGCTCCTGCGATACGGGGAAAACGCATCAGGCCACGA
GACCACGCGCGATCTTCAGAGGTGAAAAGGGAACGGGGGGTGAAGTGTGGAGGGACGGCG
GGGGGGACCTTTGGAAGGGATGACGCCGAGGAAGGCGGCGCCTGCGCCGGAGATTGCGCG
GACAGCCCCTCCTGCTCCTCGTCGGCGGCCGCCTCCATACCGGAACCCTTCGCGTGCGCC
ACCGCGAACCTGGGAGCCCGAGGCGGGTTGAGTGACGAAAGAAAGCACGGCTGCACGGGG
CAGAGCGGATGGTGGCCTATTAACAGCCCATAAACCTGTCTGGCACGGCACGAAACGGGC
CGTGCCTTGTTGGCGCGCGTGCCTCGGCTCGAGCCCAGGAATGAAACGGCCCGGCCTGGC
TCGATACGGCACGGGCAGAAAAACCGGTTCACGGAAGGTTTCCAAAACCAATGGCTAAGC
TAACTGGGCCGGCCCAAATATGCGGCGAATAGCATTTTTCGGAGATTTACACCTAAAAAG
TGGGAGCTGGGTAGGAAAAGATGAAAACGGCGTCACCGCAACGGGGCATGAGCACGGAGG
CAGGTGGGATAGTGTGGTTCACGAGTTGGGAGAGGATTAGGGGGAGACGATGGCGATGTT
GAGCGGGCAGCGCTTCAGCGCCATGGAGCTCAACATCCCGCCCGCGTGGACTCACGCACA
TCTCGTTCGCTCACGGCACATCCTTCTCGTCAGGATCCTGCATCTCTGAAACGTTTACCC
GAAGAAATCAACAGCTATACTGAAGAATTCGACAGTGACGCTGAATCGGTACTTACCTGA
GAACCGGACGGCCACCTGCTCACTTTCACGCCGTTGCCGTCACTCATTGACGTCTACAGG
ACGAAGCCCGGAGCACGTGCGACGCGAGCTACTTATCTCATTCCCACGCACCTCTGGCGC
TTATGGGAAACGGTGGTGGTTGGGTTTCGACTTGGTAAAATCCCATTCGTCGTTGTCGAT
CGCGGCGGCGTTGTTCCGCGGCGTGTGGCGGCGGAAGGGCGAGGTCACCGGCGAGGGTTC
CGGGTTATCCTGAGGTAAAATTCTAGAGCTGAGAGTGAAATCGCTACGCCTACACTGACA
AAGCATATGAACGAGATCTCGGACAAACTAGATATTCAACGAACCAAGAGCATCTCTAGC
ACACACCGCATTCCGCCAGCATGAAAAACGGGTTTGCCAGTTCATTTTTGACTGCGGCAG
AACAGATACCGCATTACCGATGAATCTGCAAACCGTAAAAATAGAATTACATAAGTAAAA
AGAAATTTCAACAATTAACATGAAAAGTTCAGAAATTCAACATAGTTCTCACATACAAAT
AGCAAATAATATAGTTTTAAGCATCCAAACAACCGAATAGATCATTTTTGCATCAAAAGA
ACCACATTAAAGTGGCGAAACTGTGATGAAGAACCATCAAGCACCACCACCACCACCACC
ACCACCATCACCACCGATGGCAGTCGTCCTCCTTCGCTCCAAGATCCCCTTTCTCATCAA
ATCGTGTCACTCCAAGGTTATCTCATCCATCTCATTGCGGTTCATGGTCATGATCTTGTT
CTCCTCGGCAATGAGCTTGGCGAGAGCTATGGTTTCCTCGGCTTGGGCTCTTTTGTCCTC
AATGTCCACCTTCCGCAACTTGCTCTCCTTGATTTGGTGCCACTTCTCCTCTTTCTCTTG
AGACCTCTTCATTGCCAACTCTTTTTTTGCTTCAATAGTCATGGTGACCATCAACTCATT
TGACTTCACCATATGCTCTATCTTCTCTCTTAAACTTGATGCCTCTGAATCCTTCCTCAT
ATTGTCTTTGGCCTTCTTGGTGCCATCCGGCCTACCCTTGTTCCTCTCTTCTTCATCATC
ATCCTCATCATCCAACAAGGTGAAGGCACCTTTCTTCGACGATGCTTCTTTGTCCCTCAC
CTCCATTTCTCACTATTTTTAAGCATCACCCAACAATGCTCAAATGCAAAGGGCTTGCCC
TTGGATGCCGGCATGTCTCTATACCTTGCGGCTGCAGTTTTCTCCTACAACCAAAGGAAC
TATGTCAAAGCACTATCATTTGCA