morexGenes - Barley RNA-seq Database

Contig contig_159132
Source Contig contig_159132
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_159132 (7475 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_159132

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20680	10	1998 bp	AK368479	Available	Available	None
MLOC_20681	1	438 bp	None	Available	Available	None
MLOC_20679	1	986 bp	MLOC_20679.1	Available	Available	None
CDS Structure of MLOC_20680

CDS Structure of MLOC_20681

CDS Structure of MLOC_20679

Contig Sequence (7475 bp)

>contig_159132 7475 assembly3_WGSMorex_rbca.fasta
TACCTCGCCACATTCCAGGGATCCACGACGTGTTTCTCGTGGAAGCTCATTTGGAAGAAT
TGGGTGCCGCCGCGAGTGAAGTTCTTCCACTGGTTGGCCAACCAGGACAGGTGATGGACG
GCTGATCGCCTCACTAGACGAGGTCTCCAGCATCAGCCGCCATGCCCACTCTGCGACCAA
GCCCCCGAGACGATGCGCCACCTCCTCCTGGAATGCCCCTTCGCCAGGCAGACTTGGTAT
GAAACCCTCTCCTGGCTACGGATGACCACCGCGGGACCAAACCACGAAGATTCTCTCATG
AACAGAGTTAAAGATTAAAAGAAGCTTACAATGTCAAAAATGTTGAAGAATGTTGGTTAG
AACAGAGTTAAAGATTAAAGAAGCTTACAATGTCAAAAATGTTGAAGACGAAGACGAAAA
ACGCATAGGTCAAATAATAAACCCAAGGACTACCACCAGCTGAAGTCATTGGATTCAAAA
TTTCCTTCAAGTTTTCCCAAAATGGTGAACGGAAAATGCTGCAGAAAATCCACATCAGAA
TGGGAGGAAAAGTCAACATGCACACACACAGAAACAATGGATTACCTAGCCATAATGCTT
GGAAAAGCAAGTAAGTATGAGGTTGTAAGCAAAGGCTGCATCCCTGTTGGGTTTATATTG
AAGGGGATATATGGCTCAACCTCTGTAACTGGGGAGTTTTCGTTCCTACAAAAGAATGGA
GACATAGAAGGGAAATTATAAGGTTTCCAAAAAACATAAATCTAATATCAGCAAAAAATT
CGTTCAATGAAGAAGTGATGGTAACCATCAAGTAATTTCTGTTGGGTCAAAATGCATCCA
GCCATCTCATTTTGACATACCAGGGTGAAGCTAAACAGTTGGTAGAAGAGTACAACAAAA
ATGTATAGATGATAAAAGTACAACCCTTCTCTTTAATACTCCCTACGATCCAAATTAATT
GTCGCTGCTTTAATATAACTTTGTACAAATTTTTTACTAAAGCAGCGACAATTAATATGG
ATCGGGGGACATAAATACAATTATAAGCAAAGCATGCTAACTTGATAAGTAACACATGGA
CCTTACCCAAGATGCCTCCTTTGCGACCAGGCCACAGAAACAAACCAACACCTACTCCTG
GCCTGCCCCTTCGCTCAACAAATACCATCCTGGACTGGATCGAATGCCGACCCAAGCATC
GGATCAGGAGCCTACGGTCACGGACTGGTGGCTGCGCGCGAAGGAGCACACGCCGCAGAC
GCATCAAAAGCCCTCAAGTCCATTGCCATGCTCGTCCCCTGGATGATATGGAAGCATAGG
AACGAATGTGTCTTCGACCACGCGAAACCCTACATTGATTCGCTAGTTGATAAGATCAAA
GACGAGGTCCGATGCTGGGCAAAGGCAGGGGCATAGGGTTGTTCTGCCCACATCCTGGGA
TGTCCACTAATCGGGCTCATGGCATTGTAAAGCTCATCTCCTAGGAGGATTGTTCTCACA
CCCATCTTTTCAATAAAATGAAATGCAAAGGTTCTTTGCATTTTCTCGAAAAAATAGGTA
ACAGATAACCATTTCCATCTTGCACGCATAATGTTCTAGTATGACATAATAATTTTTGCA
AGTTCGAAAGAAAGTAATGATACATCTTCAGAGAAATACAGTGTTAAGCAACATAAGAAA
AAACTAACAGGTAACCATTTGGCAGATAATGTTCTAGAGTTAGCAGAGAGTTTTTGCGAA
GTTAAAGTAAGAAAAAAAAAGTTATTTGCTTATTACCGGAAATAACAGCATTCAAAATTG
TGCTGCAACAAAAAAAATACAGAATCAAACTATTTTATTACCTGGCACTAGAAGCCAACT
TGAATCCATAGTACTGAAGCTTTATCTTCCTACATCCTTCAGTCACCAACACTGCCCCCA
TGGTAACCATCATAAAGATCCCAGCTACTCCCAAGATGTAGGGCCAAGATGTGTGCACAT
TTCCTGCTCCGAAAGGCAAGTTCAATTGTTCAAATAAGAGAAAACAATATGAAACAGAAC
CATCGCACTATCAGTTACTGCATATTCTACTACATACACTGACACAAGTGTTCAACTGAA
GCACTTTGTGTTATAAACACGATGTTGGCATAAAACATGTCAAGATTAAATAGGCACTAA
CTGTTCACAGCACACATGATGCTGGATGAGCTACAATATGTTATGATGAGCTGAGCTGAA
GAGATAGATCTGATGGCGTAGTTAGAAAAGATAATGTCACTGCCAAGATATCACAAAAGA
AGCAATATGGCAACATTCCCTACAATTTAAGTGCAAGCATCAATGTATGATTTTCCTAAG
CTTAATTAATTAAAACACAACCAAAAAATAAATTGAGGGAATTCTTCAATTTATTCCAGT
AAACTTGACAGAATATGATGATAATTTGATCTACGAAGGAATATTAAAATTTAAGATTTC
AACCGTGATTTTTTGTTGCCGGTATGAAAGGCAGACCCGAAATAAGCAAGAAAAAAGGGC
ATGTAAAAGTAACAAATACAGTCGAGCAATATACAAATCACCGTCTCTAAGGTTTATAAC
TTGCGTGGAAGACTCAATTAATAAATAAAACATACAAACAAACAATAAGTTAGGAGGGAT
TACCTGAAAATTGAGTTAGCATCTTGTGTAGTGTATTTGTGTAACCAGTCAATATTCCAA
CACAGATAATCAAAGATGAGCCATGCCCTGAACGGCAAAATACACAAGAAGCAGTAAGCA
TGAAATTGCTAGCCAATAACAAGATATGTGCTGCTATTGATGATAATAAACATGGTAAAG
GTTTACCTCACTACATCATCAACATAAACATTTATGATTTTGCATATGTTATTTTTCAAG
ATCATGCAGGAGGAAATCCTACTCGTTGATTTTCACATATAGCGAAATCCTACTCATTGC
ACAGTTCTGTAATCAGCAGTCGAACTAGAACAGAGCGAAAGCCCCAATTCAAAAACACTA
TTTTATTTTTCTCGGGAACAGCAGTAGCGGCAGTCACATTGGTTGGGACCCAAATCAGTT
AGGAAAAATGAAACAAAGTGTGGAATTACTTTTGTCATGAACAGACGATCCCATACAAAT
CGGGAAGCTCTTCCACAACATGAGTATGCATTTATTTTTTCTGTTAGGGATAAACATCAT
AGAAAGTAGATCAACTGCGAAGGTTTGAAGAACAGCGATTACAGGAGAAAGTACCCATGC
TAGGGTGGAAAGAAACTAGATTAGAGGGGGAGATTTGAGGACTGAGTCTCATTGACAATT
CTGACTACATCCAACTTGCGGGCCTTCTCATCCCTAAATAGGACGATACCTAGCAAGCAA
TCTAATTGAACATGCTAGTACTAGATAACAGATGGCATGCAATCATTTCCCATCTAGAAC
GTGTTTACCTCAAACATAACAACCTAGCAGCAGCACTAGCTTTTGCTGACATTCTACTGG
ACTATTGGTACCGTGCCAAATGCCACAGGAACACATAACATGCTGATCACAGCTGCCAGA
TTGCAAAGCCTAAACTGCTGCTGCTGTTCCACATAGACTGCCCAAAAGCATGTATTTATT
CAGCTTATATAGTACAGGTTCAGTTTATTTGGTGCAAACAGTATGCAGAACAGAAATATC
TCATTCAGACAAAAACAACAATCAAATGGTCACGACTTAAGGAAATGATGCGTAGACATG
TACTCCCTCCGTTCATAAATATAAGATGTTCTACTTTTTTGTGAATCGGATGTATATAGA
TACGTTTTAGTGTGTTCACTCATTTCAGTCCGTATGTCCATATTGAAATATCCAAAACAT
ATTACATTTGTGAACGGAGGGCGTACTATACTAGTAATATGAAAAATGTGACTCAAAACA
GACTCGTACGAATAACCATTCAAGACTTCCAAGTACAGCATGCACATGACAGAATGTTGA
ATAGTACAACATAATAACACAAAAGAGTCAACTCATGCAACAAATGGTGTTAAAACAAAA
TATGAAGGAGATGAAAGTACTACCAAAGCCAGATTCCGTTATGGTGTCACAGATCCAAGT
CGTTGACATTGCACCGAGGACAAGCAGAAAGCTTGTTAATATGACATGCTTAACCCTGAG
ACATATGAAAGGAAAATAGATAGAGCAACAGAGAGAACAGAAAGCATCCCTCCAGTTCAA
TCAAATTAGGACGACTTATAATGTCTCATCACTGTACAAATGAGTCAGGGCATGCCGTAA
ATCAAATGATAAGTTATATGCAAACTCTGATAACAGCACACATTTGTGCCAATTCTAATT
TTAAAGTGCCTCCATCTTCCATAGATGTATGGCAAAAGAAAAGGAAAAAATCAAAGGAAC
AGGCATGATGTGGCCAATGGTGGAGCACTTCAGCAAGCTTGCCAGATACGAGCAAAACAG
AAGCCAAAGTATCATATCATATACACATAAAAGGTAATTTACCTGTAACTTGCTGCATAT
ATGGAGTACTGCAGCGAATAGCATGACACAGTACAAGCAGCCACAATTGCAAAACCCAGT
GATAGCCACCATCTAGACATCAAGATGGAGGAGCTCAGACTAGATGAGGTTATAGAAAAT
GGAACAGTTCCCAAGAGAAATTCAATCTCACTGTTAAAGATAGACAACTAAACACACATA
TAGCTTTTGATCTTCTCATGCCCGTCTAATCCTTCCTTGCGAATCTTTTCAAGTGATGGA
AGAACATGGCAAAGAACCTAACACAGACACAAGTCGTTATTGTAGTAGTATAAAGGGTTG
TTATATCTTGCAATAAAAATTGCCTTCAGCTAGTATAATCATAAGACACACTGAAGTTAC
CCAAGTAGACTTTTAAGTGGCTTGATTGTCGTAGTTACAACTACAAAGTGGTTGTTTGTA
AGGATTCTGGTTTTCTGTAAATGGAGAGCTAAGGTCTAGGAGACATTCCAGCTTCCTTTG
TCCCCAAAAAAAGGGAACATCTTGCTTGCGCCACTAGCCACAGCCTAAATCTCAATTTTA
CGCTCTTCTTTTCAGACTTGTCACTATTGCTATCACACTGTTGCTTGAATACGTGCATGA
CATCCAGGTCTGATATTCTCTTTATGGCCTCGATAGCCCAAAATTAAGACCAAAACGCCC
CCAGCTGTATGACAACAGACCTCATTTTCTTGCTCCATTGTGCTAAGGGTATGTTTGGAA
CTTTGTGGCAAAATTTTGGCCTCTTTGTTTGGAGGGTTGCCAGTTTTTTGCCGTGTCAAT
GGCTCTTTCACCCACTCTAGTTCATTTTTCCCAATGTAGACACCAACTAATGGGCAACCA
AAAGCTTAACAATTTATTTGGCTAGCCAAATATTTGGTAGGGCAAGCTTGGGCAAGAACC
AAACATAGGCAGCTTCTCTCTGCTACGTAAGCTTATCTTACGTGCAGCTGTAATGGTGCG
TACCAAAGGCAAAAAAACTTGAAAGTTGAAACTATGTTTTGTATGGATGAAATGGAGCCT
AACAGATACAAAAACCTGAACTTTTCTAATGTTTAGAATTTTAAGTGTGGATTTGGTTAT
CGTCCATCATGTTGAGGTCAGGTGCATAAAATCCTTCGGTCATGTTCATTTTGGTTGTGA
CAATAAACTTCATTGCCACTGCATAGCATATGTCACGAATTATCTTTGGCTGGGGGTTCA
GGCCTTCAGGGTTTAAGGGGGACTAACAGCCGGCTGCCCGCTTCTGCCCACGCCGTCCCG
CTTGCATTATGTGGGCATTTGCAGCAACCCACAAAGCGGCATCGTCTAGTATGTATGCTA
TGTGTTCCAGCTAGTATGCTAGATTGCACATACAGTAACTCTCCTAACTGAAATTAATCG
ATTAACAAACAGAGATACGCATAGTTAAGCTCGCTATGTCAGGATAGAGACGATAATTGA
TGGGGACGCTCATGTATCAATAAATCAATGTCGGTACTTCTTAGACCAGTCTAGATGTTG
CATATGAACATGAATCAATCGGTGACACACATCATCAACGATGATGTCATAACAAGAGTG
GAGAGAGGCTGATGTGTTCACGCTTGTGTTCAGATTTGACTTCAATGTCGAAGCTGCAGC
ATGCAATGGCAGAGGCTGATCAATTCGGCCGTTCGCACAGACCACGCAGGACAAGTGGCC
TTAGTTGTGACCGAGCGGGTTGATCCACAAGTTCCACATCTGTTGTGTGCTAACCTGCAG
GCATCCATGTACCATCTTATGTGAGATGGTTCATGCGGCACTGCAGGAGGCCCGCTCCCA
CTAGGACCTTAAAGTGGGGTTAATGGGATCTGAACCTAGTTGAACCCCAAAATATGTCAG
GTTCTAACTGTCGAACAAGCAAAACAAAACAGCTCTGGTGAAACGGTAATTGACGGGAAT
GCATGAATGTAAATTCAAACAACAGTGTAACGGCAATAGTGAGAAGGCGAAAAAGAAAAC
GATAAATTTGAGATTTCTGCTGTGGCTAATGACATTGGAATATTGTTATCGGAAAACAGA
AGAAGAGAATATCTAACCTGCATCACAATCGATGCTGATATCTGATGACTGATTCCCAGC
TGGAAAAATGATAGCTTCAGTTCAGAAGCAAAATCAACGAGGTCATCTGCATAGATGAAG
GCGCATCGCAAACTGCAATTTAAGATGTTTGACAAAATTCCGTGACACGCCTAGACGCTT
CGGCACGTGTACAGTACAGTGCGGCTAACACGAAGGGATAATCCAGAGGACAGTACCTGC
AGGGAGCGGGGCGAAGCTGAGATAGGAGTCGGGGATGAGGCGGCGGTCGAACCCAGGAAG
CGGCACGAAGTAGCCGACGCGGCTGAGCACGATGAGCACGGCCGTGACGGCAAGCCGCCG
CCGTATTTCGCTGCGGAAGAAGGCCTCCGCCGCGCCCTCCGCCACGGCCCCAAGCCGCGC
CAGGTCCAGGAACCTGTTGCGGAACCCGGGCACCTTCTTCCCCCCCGCGCCACCCTCACG
CGCCGGCTCGGCGGGGGTTGTGGCGGACGACGAAGCCCTAGGGGGGAGGAGGAGGCGGCG
GGGCGGGGGGAGCGGGCGCTCGGTCGTGCGGAGGAGGAGGTGGCACTGGTTGGCGCGGAG
AGATGGGTGCTTGGGGGCGAGGCGAAGTGGCGGGAGGGGGAGCGCGCACCGGGGTGGGAG
CGAGAGCGCGAGGGAGGAGGACATGGTGATGGTGGCCGGCGAACGAGCCTCCGTCTCCTC
GCGCGGCCGCAATCCGCAGGGACGGGAGGTTTGGGAAAGCCTGACGTGCAACGATGCAGG
CTAGCTGAGAGCAACTCTTCTAGCAGACCCCGCATCTCGCCGGCCAGCAAAAGGCTTTGC
CGTGCAAAACAGCTTTTGCGGGCTGGTCCGAACGGACACAGATGAAGACTCCCAAACGGA
TTCGTAAAAAATATATTTTTTTACGAATCGGCTTT