morexGenes - Barley RNA-seq Database

Contig contig_159079
Source Contig contig_159079
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_159079 (6235 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_159079

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20605	4	1977 bp	MLOC_20605.1	Available	Available	LOC_Os12g30020.2, FRAME:-3, EVALUE:2e-158, 13112.m03058 protein cyclin-T1-4, putative, expressed
CDS Structure of MLOC_20605

Contig Sequence (6235 bp)

>contig_159079 6235 assembly3_WGSMorex_rbca.fasta
TTTAGTGTGTAGATTCACTTATTTTGCTCCGTATGTAGTCCGTAGTGGAATCTCTAAGAA
GACTTATACTCCCTCCGTCCCGAATTACTCGTTGCAGAAATGGATAGAAATTGTTGTATC
TAAAAGTAAAAACACGTCTAGATACATCTATTTCTGCGACAAGTAATTCCGGACGGAGGG
AGTATTTAGGAACGGAGGGAGTGTAAAAATAGATATAATAACGGGTAATGTCTAGATACA
TCTATTTCTGCGACAAGTAATTCCAGACGGAGGGAGTATTTAGGAAAGGGAGTGTAAAAA
TAGATATAATAACGGGTAATACTGCTCAGTACCGTTGGAAAATCACCGAGATGAAAAATG
CAGTTTGCTGCTTCACAGGTGGTCCCAGGCCCCACATGCCATCCACATGTTAGATGATAA
ATTTCCAAACTATACCCCATTGTGATGTTATGCCACTAAGCAAATTTTCTGTATACCAGA
AATGACAGCAGACAAGGGCTACCAGAAAACTTATCCTCAAAGTCAACACCAACAAAAATA
CCTCATGTTCTATAAATACGGCTACCAAATACATGTTAGATGATAAATTTCCGAACAATA
CCTCATTGTGATGCTATGCTACTAAGCAAATTTTCTGTATAACAGAAATGACAGCAGACA
AGGGCTACCAGAAAACTTATCCTCAAAGTCAACACCAACAAAAATACCTCACGTTCCATA
AATACGGCTACCAAATACATGTTAGATGATAAATTTCCGAAGAATACCTCATTGTGATGC
TATGCTACTAAGCAAATTTTCTGTATAACAGAAATGACAGCAGACAAGGGCTACCAGAAA
ACTTATCCTCAAAGTCAACACCAACAAAAATACCTCAAGTTCCATAAATAAGGCTACCAA
ATACAAGTTCATAACAATGTGTTCCTGTCATGGCATTCCTCCCTTGTGTATCCCAGAACA
ATAATACTCCGTTTAAAAAAGGAGCACATCTTAACAACAACTCACATACCAAGGAATTAA
GAGGGGTAGTTTATTAGGCTTTAATGCATTTGCTCATGGAGCCGCTGGTGATACATATAT
AATCCTGCGTGCATTGGCTCGCTGCGCCTCAATATCCTAATACACTCTGTAATGTGAAAA
AGACGTAAAAAACTAAGACGCGCTTGCTCAAATTATGAAAAGGAGGGAGGAGTGCCCTAT
GGACACAGGAAACACCTTGTGTCTCTGACCTAGCCAACCTAGTTTCAGTATCATTTCTGA
ACAAAGATGGTGATGAAATTTCAGCCATCCAATCTCCTAAGCGCCTAAAGCATGGGAACA
ATTGATGCTTGCTTGCAAAAACGTTTAAACTACTATCCTTATGATAATGAATAGTAAAAT
TGTGCAAATATGCGCTACTGACTTTGTATCAAGAAACCAACCTTCCAACTGTCGTGGAGT
TACGTCAAACTCTTGCCACCAGACCTTTTCCCCGTCTGCTGGAAGCTTGACTTTGAGGAA
CTTTGCAGCAAGGAAGATTGCGCCCGCCGCAATATGATGGGGCTTAAATTGCAGGCAAAG
TGAAGTGCGTAGCCTGTACACCCCTTTTAAGGTATAGTAAATAGGCATAATGGGGGATTA
CTATTTTTGTAAGGATAAGGGTAATTTCAGCATACCCATCATTGACAAAATTCCAGGCAA
CTTGAGCAAGTGCATTTTGAGCAACCTTGAATTTTTTTATTGCTTCAACCAAAGGCTTGT
AAGGGTGGTGCACATTCATGTCAAAACCAAGTGTTACAAGCACAAGACGCTCCCCGATCA
AAAGAAGTTCCTTCTGTTGTTCATACACTTCCTACACACAACACAGATATCCTCAGCTAC
CATTCTTGTCACAGTACTCAGGAAATAAAAATGCACCGGCTATAGAAGAGTTGCAGCTTT
ATGTTGTGAGGGAGAAAAAGGATAGCTCAGGGAACTAGATGATAATATCAAGAGAATGCT
CACAAAAATAATCTCACCTTCTGCTTAATTCGAGCAACTGCAGCAGGATCCTTTTTGTGG
ATTATCTCATAAGAGATGAGTACGACATCCTTCAGGGGTCTAGGTGTTTCTTCAACTTTA
CCCGCCAAGAACATGCAAACGGTGGCTATTGTCTGCAGATTATAATGAACTTACATTGAT
CATTTACAACGTGAAGTTGATTATAAGAAAAATACCATCCTAACAAATAACATACTGCAA
GCAGCATGCTCTATATTGTACGCTGTCCAAGAAGAAAAAATACTTAAGGCCGCTTTGATT
CGCAGGATTTCTAAAGCAAAGGAATAAGAAAAACGCAGCAATAGTGTGATGTCATCTTCA
ATGCCAAAATGCGTAGGATTCTTCACAAGAGATTGGAGTAGATGTAAATTTTCCTTCCAA
ATCTAATTCAAATGGATAAAGGGAAAATCCATGTAGATTGCAATCCTACCAATCAAACGA
CACAGGTAGACACAATTCCTACGGATTAGAATCGTCTAAAATTCATTAAGAAATCATTTG
AATCAAAGATGCCCTATAGTGCTAGTCTGCATGTCTTTCCTGCAGATACATGTTCTACAG
GCGACAGCAAATCATTTGTTCTTCTCTTTCACAATATGGGTGGCGCGCATCAATGTATGA
ATACATGTTATTATACTGCCTACCATGCATAGAAAGTGATTTACAGATAAACTAGAAAAT
ATGATGTTTGATAACAGACATATAAGCTCATAAAAATTTCAGCAATGCTTACCTGTCTAT
CATTTTTGGCATGAGATTGACGAAGAAAAAAACGATGACAGAATACTATAGCTGTAGCAA
TTGTTACTTGGGGCCTACATAATGAAGTAATTCATCAATAAGAAAATACCATATACAAGT
ATCAAGCAACCCAAGAAAGCACAATTCATGCAGTAATACAAAAGGGTCTTTACTCTACTG
ATTCATAAATATTAATGGCACAAATGTTCTAAAGGGTAAGGGCACATAAAGGCCTATAAC
ACACCAAATAGGGTTGAATATTTACTGTTCTACCGAAACAGGGATGTCATCAGCCATTGT
TGCATGCCCGATAAAAACGAGTGGGCTAAACGTAACAACTCAATGAACATAACACTGGGG
TAAGGACCAATATGTTAAGAATTCTCTAGAGTAAAAAATCAATGAATATAAAGGGACTAT
ATGTTAAGAATTTATTCCTTCAAATGCCGTGTACTGATGAAGAAAACATCTACCCTTTTT
AAAGGGAAAAAGTGAGCAATATGTCAATAACTTATTCCTAAAATGGCATGTGCTGAGTAG
TAGTGTTGTCACAGGCATATCTAGCAACTTTCAAACATAAATATCATATTCACAAGCATG
TCCAAGCAAATAATTCAGCTGAACAAATAACATATGACTTGATAATTGAGAGCTTTACCA
TCAAATTATTCAAATCAAATAGTGTTAAATTATCTCTGAATGTTGTCACAGAAAATAAAG
TTAAGAAAAAATGCTTAGGCAGAAGAAAAAATGGACAGGTCAATGATCTAACATAGTACA
TAGTACATATACCGCATGATTAAATGAAAACATTTAGTCCATATAATCAAGTAAAATGCC
AGGAAAAAGAAGACAGGTTTTTCTGGATAGGGAAATGATTAAACTGGCACTTGAGCAGTA
AGCATGCTTGGCAACCTACAATGTGAGGACACTATGTTTATTTAAAACCTATGCATCATG
TTCCCTTGATCACCAGAGGTGATGCTTGTGTGATCTTCTGAATAACATCTTCATCCCTAA
CATCTTATGTTCTTAACAAACGTAAATCACAGATGCTTTAGCTATTCCTCCCGTCAAATA
TTACCATTAAATGTATGTTGATTCGCAGCCTAAGAGTGTCTAAGCATGTCAGACACTTGC
CTAACTAGATCAAACTCGCCTTAATGGTGCGTGACAAAGTGTGTCAGGGTTTGGCTTCCA
ACTAAACAGGTCCTGACAATCTGTCCGTAAAGGATACAGAACGTAGTCATGCACAGTAGA
ATACAAGAACTGTCATCAAAAGAAAGCAATCATTTATGCTTTAAGCGTGCACTGGACTTT
CCTCGGATTTGGAGAATAAAATGAGGATGACACCAATCATAAAGTATACCATATATTCTT
AACGAGAAATGAGAAAGGAAAAAAAAGTTGCTTCACAGAAATTAAGCTATAGGAAAGCAT
GCAGTTGTCTGCAGAAACTTGAAAAGAACTTTAAAGATTCAAATAAACTGCTAAAACATC
AGGTATGTTACTCAGTAAAAGATGCAACAATAAAATATCCATGGTACAATGTATTCTTAC
ACTTTAAGCCTCATCCCGAAATCCTGAAGGAAAGTGCAGTATGACTTGCGAAGGTAAGAC
TCCTTCTTTAAATCAATACCATCTCTCCTTGAAAGGGAATTCTCTTCTATTTCTTTTCTA
CTAAAATACCACGAAGCACCAAGTTGGTCACCTTCCACACGTCTATCATAGGGAGTTGTA
TAAGGGCTGTTCTCTACAATTCCATGATGTGAAGAGTCACTAGTCTGCATGATATCCATC
TATGATTTTCTTCTTTTCTTACAAAAAAAACCTGGCAAAGAGAGAGAGAGATAGTGTCAC
CATTGCAAACTTAGTACCGTAAGCATACATAAATGAGATGGAAGGTGCAGTTATGCACAT
ACCAAACTGCATATATAGTTGAAACTTAACATGCAGTAAGTTGTGAGGAGCTAAAGGCAT
CAAACTATATTCCCAATACATGCAAAGGATGGGTGCCGTATAATAACAATGAAATACAGC
TTTGATTAACTGCTTGTCCTGTCCTCCATGGAAGCCCAGTAATTCAAACAAATTTGTGAC
ATGTGGAATATAACAAATGGAAGGGGTTTCTTAATTACAGCATGTCAACACCTTAACTGC
ATTCACAAGGATAACAAGTTAACAACATGAAGATCATGGGCGATGAGTCAGGGCCAGGAG
GACCACGTGAAGGTGCCAGAACTCGGCCCGCGGCGGGGGCTCGAGGAAGAGGCGGGAGAT
GCTGGCGGCGGTGGCGATCTGCCAGCGCTAGGCTTAGGTCGCTATGGGCAAGAGGAGATG
GGTCGAGGCGATTTTTTCCATCAGGGTCAGCTGAGTCCAGTGGTAGTTTGCGGGTAATTC
TGAGCAACTCAACGTTTGGCTAGATCCGGAATCCTGGAATCCCTCGCTCCAGAAATTTGC
ATACGCCTAAGCCCAGATCTACCAATTCAGCTCATAGAGTTATACCGTTCGGGGCAGCTC
CATGTGCCCCATCCGCAGAGTTGAGAGCTGGAGGGCTACCAAACAGGGTCTTAATCACCC
GACAAATCATTTTTTTTGTACAATAAACAGCCCATATTTCCACAATTAAGTTCATTACAA
TTCATGATCGGTAAAATCAACTTCAAAAGCAATATATACTGCAACACAAAGTGTGCTCCT
GCCAAATACAACACGTAACAAAATGCAATAACCACGGTTCAGATTTTTTGGATGATCATG
AAAGCCAAATATCAAATCCTTCGAGAAACTTGCTACAAGCAGACAATGGTAGAGAAAAGG
TATCTTCATAGTTATTGAGTAGGCAACCCAATGGAAACCTACTGGAGAGTTCAGTTTACA
AGTATGTATTGTGTTCTCAAGGTGTTTTCCCAGCTACCGATCAAAGAACAACTAGTTAGT
GGCTTTGCTACAAGGGCAAAATTTGACCGCCTAACTGACAATGTGCAAAAGGGATTAAAC
CAGATTACAAAGCTAATAAGTTCAAACAGAACCAATCCCACTCCAGAATCCACCCCAACA
CAAAAGTAACACAATTATCTAAAGTAACACAGCACAAAGCTGCACATCTTTTATGCAACT
GTGGGAAACTCCAAAACTCTCAATTTACTACTTACAATCCTTTTTTTACAGTATATGTCT
GGCTTCGTGATGATTTCCCTGGTTTCGATCTGATCCGAGGATCCTAATGGCCTAATCTTA
TTCCCTGACTCTTCTTTTGCATGCCTCACGGAATAACCTCTTTTTTTTACAGTATCTCAC
ATAATAACCTTAGTATGATATGCATCCCAATTTGCCTTGTCCAACTATTACATTCCAAAT
TAATCAAAACACGCTATAAAGGAAACCGAATCTGCCACCGAATTGATACAGAATCGAAGA
TTACACGCATCCATCAAAAGTAATGGGTTCGTACCTTGCTCGGGAGAGGTGGAAC