morexGenes - Barley RNA-seq Database

Contig contig_159053
Source Contig contig_159053
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_159053 (7041 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_159053

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20559	2	1869 bp	MLOC_20559.1	Available	Available	LOC_Os06g39020.1, FRAME:-1, EVALUE:7e-16, 13106.m04044 protein retrotransposon protein, putative, unclassified
MLOC_20560	3	1146 bp	AK358310	Not available	Available	None
CDS Structure of MLOC_20559

CDS Structure of MLOC_20560

Contig Sequence (7041 bp)

>contig_159053 7041 assembly3_WGSMorex_rbca.fasta
CGCGTCAGGGGCATCATCACCAGAGGCATGGCTACAGCGGTACCGCGTGTGGTTACAGTG
GAGGGGGTCATACCACTGACCGTCGCCGACTACGACCAGCCGAGGCGGCACAATGCACAA
TGACGAGCAGACGAGCACGCCCCCGTCCACTCCATTACCTGCTCTGACGTGGCAACAGTG
CAGTCGGTCGTACCGTTGACCGAAGCCGGCTTCACAAGATGATGCGCACAATGCAGCGCA
CCCCGCCGCGTAACAAGCACGCACCAATGGCAACGCCCGGCCGGCGGACCCCACTTGCGA
TAAGACTTCCCCAGCCAGTGCGCCCCTGGCCGGCTAGAGAGGCTGCCAGCTGGGTCCCAC
CCGATACCCTTTATACCTATTGTAAGTCAGGGGGTTGGCATATAAAAACCCCTGGTACTG
CCCCATGCAAGTGGTCGGCCGATCCCACACCACAGGAGAGGCAAAGAGAGCTCCCAGCTC
CTTCTTCCTCCTCCATCATACAGCTCAAGGAGCATATGGTAGCCCCATTCGGTTTATCAA
CCAACACAAGCAGGACTAGGGGTGTTACCTCCCACGAAGGGCCCCGAACCTGGGTACATC
GAGTGTCTCGCACCGATTGTCCCCAATCCCATTTCACAGCCTGTCGGCGTTCTTACGGAC
CCAACCACGTTCGATTAGCCACCCATGGCATCTGTCGTGAGCAAAGTTATCAGAATCGCG
ATTCTAAATCGCATCAGAGCTCCGTTGCTAGGATCATGAATCGTAGAATCATACCTATTG
GGATCGTAGAAACTTAGATTCTATGAGCAATATCGTAAAATCGGAGGGGATAGTTTGGAT
TGTAAGATCGTAACATTCTAAGACTTGAGTCGTGCTTCTGACAACTTTGGTCATGAGAAA
ACGACGACAATTAAGCTTCACTCGATCGGGGATCGTGGCCAAATCCAGAAAAAAAAATGC
CTCTCTCCAGTATACATCGATTCGTTCCACAACCGCCATATATGCATGTTTTTAAGATTG
TCGAATGAAATGCTCGCTAGCATGGTACCACGACGACTCGACAACGAGAAATATCTACCA
CGACTCTTTTCAAACTCTCGATTGAATATATAGCAAACAAGACTTGATCGACAAAAACTG
CCTTATGTGGTTTTTTATTACAACAACATATATAGTAGACAAGACTTGATCGAAAAGAAG
ATAAGGCTATTCAAATTCTAATATGATCTCTAAACTAACTAGACTCTTTCTAACAAACTT
GCTTAATCAATCGGGACTCTAGTTAAGGGATAAGAGTAAGATTCCATGTTTGATGGGTTG
GTCCACATAACAAACATCTCTCCCTTTCTTCAAAATCAATTTGTTCGCAAGTTGTACCTT
GTCAATTACCCTCAAGGAACCTTGGGTACCAGTTGTGGAGCTATCTTGGTCGTAGTCGTC
GGCCTCGATGAAGAAGAGTCGCACACAATGGTGACCCAACATAAATCCCATCGTAGTTGA
AGCAAAGGCCCAAAACGAGGACGGTCTGCCAACTCAGTTGGGCTGAGGCGCCAAACCCGC
CATGGCGGCGTTCACTTTGAAGTGGTCGAAGGTAGAATAGGTGCTAGAGGCGTTGGAAGT
GGCGACACTGGAGTTGTACTGACCGCAGGAGGATCGGAGGAGGAACTCAAAAGGCTAGCG
TAGTGATGTTGGAAGGAAATGCCACTGCTCGTAGGCCTTGGTGAAGGAGGTGGCAGTGTG
GAGGTCAGATGATCAATGAAGCTTGATGTTAACACAAAGACCATTAGGCAGGCCTGCCGT
GTACAGGTACCGTTGTTGGACGGTGTTAATGGCTAATTGTTGCGGCACTTGAGCGCTAGA
AACTTGTGGGTGTAGTCAGCGACCAAGGAAGTGAATGGAAACGTGCCAACTCACCCAAGG
GACTTGCTCGATGTGATGGCCCAAACTGAACGTGGCAAGCCTCCTTGAACTGCTTCCATG
TCGCCTGCTGAAATTGTACTCGAGTTGTAAGTACCAGAACTGAGCGCCATCAGTGAGGTC
GTTGGCTGAAGTCCAAACCTTGTCGGACTCGTTCAAGTGTTGTCAATGAAAAAACTGCTC
GGACCTACTAAGGCAACCAAGAGGATCAACCGAGCCATCATATGTTGGGGGAAGTCGAGC
TTGTGGAAGCGGGGTATGCCAGAACCTGAACCCGGGTCAAGGTGATGGTTAGGCAGGAGC
GGAAGGCAGGTGATGGGCAGGGTGGATCAATAGATGGGTTCTGGAGGTGGGCACGGCCAT
ATCGGTGTAAGGAATCGATTGGTGGCTGGAGGCATGAAGGCAATAGAGGTGGCAGCGATC
TGCGGCTGGTGATGGTAGAGCTGTTGCTAGTAGGTGGGCGACAAAATTGGGGCAGGATTT
GGGTGGGATTTGAGCTGTAAGGTGGGGGTGCGAAGTGGCCCAGATTGATGTGGCAGCTGA
CGAGTAAGGAGATGGCTGGAGGTGGTAAAAGGGGGATGATGGCTGGTGGTGGTTAGCAGG
AGTCAACACATGGTTGTGTTGTGATGGCAAGTAGCTGGTTGATGGCAGAAAAGTAGGTGG
TTGGGGTGGGCAATCGGTGATTCCCCACTCAAGAAGGGGGCATGGCAGGCGTTGTTGGCG
AGGGGAAGCACCAGGGGTTAAATTGTCGCTGGGGAGGAGGGCCTGGGACCGTCATGGTCG
GCCGCTGCAGCCATGGGATCTAGTGGCGTCGGCAAGGCTGCAGTCGTTGCTCGAGTGCCA
TCAAACACTGCACTAGCCCGACAAGGAGCGCCTGGTCCTCTGCTCGTTGGCGTGTGAAGG
CATCCAATTGCTCCGTGATGTCCTTCATCTGCTCCACAGCCTCGATCTCAATTTCTGTGC
CACCATCGTAGATGGCTCAGGTACCAAACTGGAATAATCTACTGGTGACAAAACCCTGAT
TATTGAAAAGTAGACGACACAATTCTTCTTTGCTTGCTTTATTTACAGGGTCAGCCCTTT
TATACAGTAGACAAGAGTTGACCAACAAGCCGGTAAGTCCATTCAAACTCTAATACTTCA
ATCTAAACTGATAGGACTATTTCCTAAGTCCTAACAAACTTGCTTAATCAACCAGGACTC
CATTAAGGGATAAGATTCCATCATTTGATGAGCTAGCCCACATAACAGAGTCAAATCCCA
GTAATTATGAAGAACCCTTAATTAATAGTAAAAACATATAGACCCCATAATCACAACTAT
CTGTAGACTGTGTAATTTAACCCATTGAAACAACACTAGTACAGCCTACATGTATCAAAT
TCTGCCCCTGACACAGCATTGAACGCAGATAGATATCACTAGCATACTAGAAAAATGACA
TACAAACCAGATCTTGTGATACAAATGCCACATATTTTCCAATAATTTCAGAGTGAAGGT
GTTTTCAAGTATAAGAGTAACCCAGAACGCATGCTTCTGAATGCAATGAGGAAGCAAACA
GAACTCTTGATTAATAATAGCAAGATAGAAAATTTCACATAAGAAATTATAATCTTAGGA
GTGTAATAATTATTACTAAGATCCATCCTACTGGCTTGCCAAGTTGCCAGCATATGGACA
ACCCATGCGACGCAACTGTAATTGAAGGGCTCATTATGAGCACCCCCATAAGCAATATAG
TATAGAGATAAAATGCTAATTACTTATTCCATTAGGATAAGAGAAACAGAACATGATCCT
AGCTATGAGCGCATATCATGAAATCAGCAATCTAGGGAAAAATTGATGAGCATCTGGGCA
AAATGCACCTCCCAGATTAAAATGATTTATCTGCAATATCTTAAATTTATAATTGAAAAG
CGCGGCCTTTTGGCATGTGCATCAGTAAATTGTAGTGTACCTGCAGCTGAGACTGCACAA
GGTAGGCACCCAGCTTCTTCGCTGATGGATCATTCGGCTTGCTGCCGGCCGATAGCGACA
GCGACTTGACAATGGGAAGGAACACCCCTCCAGCCCTCGCCGTGGTGCTGGGCATGGCCG
GCGCGATGCATGCCTCACTGATGGTGAGACCGTAGGATAGGCCCAGAGTGCTTCCACCCA
ACCACTTGACGAAGTAGGTGGCAACGCGGTCGCCGAGGCCGGTCTTGACGAACCCCCGTG
CAAAGAAGAAGGAGATGACGATGAGCCAGATGACCTCGTTGGTGAATGCCCCGAACGCCG
CCGTGAACGGGAGCGTACCCGTGGCCACGGTAGCAGTGAGGCCGAGGAATGCCCACGCGC
CGACTGGGAGCGGCCCGAGGACGAGCCCTGCGATGGTGGAGAGGAAGATGGAGAGGAGCT
GCCACGCCTGCGGAGTCACCTCGGGGGGCCGCGGCGCCAGGAATCGCACTGCGAGGCCGA
CCGCGATGGAGGCGACGAGTGGGAGCAGCTTCGCGCCGGACGAGGCCGCGGCGAGGGGTG
GCGCCGGTGCGGGCTCAGTGTTCGGGCTTGAAGCTTGGGTGGCGGACGCGGAGGCGAGGA
GAGGATGGAGGTGGCGGCGTGTGGCCAGGGAGATGTGAGGGGAGATGGGGCGGGAGAGGG
AGAGAGAATTAGCGGAGGGCTGCAGCTGGAGATGGCGGCGGCGGAGGTGGTTGTGAGGAG
TGGGAAGCGGGAGAGCCGGGCGGTGGGACACCGCGAGGTGGATGCGCTCCATTGGCGCCC
GCTATGTGCACGGCGGCGCGAGCGGCCGAGCGGGAGGATCGGGGGTCGGATACTGGTGGC
TGCGGTCTTCGGAGAGCTACGGGTGAGATTGGGTTTATACGGGAAAGCATAATCCGCTAG
GGTTCTGTACAGTGTACACACTGGCCCGTTGTGTCAGCGTCTTGGTGTTCGTTTTGCGGT
GTTTTTGTTCTGTTTTGTTTTCTGCATGAACCCTTGTTTTATTTATATCATGGACGTATA
CACCCGCCCCCCTCCCCCTATACGTAAGTTTAGGTTCCGTAATTTTTTTCTTATTTCATA
CATAAAAAGACGTAAGAAAATATAAAAAAAAATATAAACAATATTGCATGTCACGTTAAA
TTGCAAACATAAAAACATATCGTAAAATATATATATATAATGTAATTTTTCTAATCCTAT
GCTTACTATGTTTGTTTTCTTATCTCAACTTTCACGTGGTGAATGAATAAGAATGTAACT
AATTCTATTTCAAATGTATTTTATTTATGAAACGATCCTAAGGTTACTTCGGATGAAAAA
TAACTTATTCTGCATTCTGGTTGATGAATAGACTTTCTCGCTCTCTCTCTCTATATATAT
AAAATAATGTTAATCATCACTCAGGGTGTATAATGAGGTATTCTTCACTCGAGATAATTT
TACGTTACATTCATAAATAAATTTTGTTTTGAATAAAAATAGCTACATGCATATATATTC
ATTATGTAAAATATGACATAAGAAAACAAAAACATATGTTACAAGACCAGAAAAAATGCA
TTTTATGTGAATTTTACACTATGTTTTTACGTTCGTAACTTTACATAGTGTAAAATATTT
TTTACGATGATTCAATATTTTCTTACGTTTTGTTTTTAGGTAAGAAGCAAGAAAACAATT
ACGGGAAGCTAATACGTAGACTAAAAAGAACCGGAGGGAGTATGATGCATTGATAGTAAA
ATAAAAGGGGTGGAAAATAACTATTCCTCATCCAGGTTAACTATTTTTCATCTCTCTATT
TTTACATCAATGCATCGTAATTTTATGTTTCAATTTTTTTTATTTCATACATAAAAAGAG
ACCGTAAGAAAAATATATAGTCACCATAAAAATATTTTATGTCATATAAAATTACAAACA
TAAAAACATANNNNNAAATATACATAAAATGCGTTTTTTCTGGTCTTGTAACCTATATTT
TAATTTTTTATATCCAATTTTACGTAATGAATCAATATTAATGTAACTATTGGTATTTCA
AATTTAATTTATCTATGAATGATCGTAAGATTACCTGGATGAATAATAACTTATTTTGCA
TCCTGAGTGACGAATATATTTTCTATACATATATATATATATATATAATATATATAATAT
ATTATACTATTAAAGGGGTGAACGCTTCTTCCTTTTTTCGTCTGTTTTTCGTTTTTGTTC
GTCAATTATACATGGCCAAACTTGGCATGTTCCGTGCTTTTTTTTTGTCCAACTGACAAA
AATATGGTTGAAAAAAAATGTTTTGCTCTATTGCAATTGAACTCAAGACCTCAACTTCCA
TAGGAAAAGCAACAACCACTCATAGCGTTTAATTTTGCTACTCTCTCTATTTTTGTTTAT
AAGTCATCTTAGGTTGTGCATCGCGATCAAGACGAAGAGAAAAATGAGAGAAATTAATGT
TAATTTGTTAATTAATATCATTGCATGCAATAAATTGACCAGTGCATGTGAATGCTAGTT
ACACTATTCGAATCAGGGAATTTGCCATCAGTGAGTTATTTGTCCTTTGCTCGCTGATGG
CAAAAAGCCTCTTTGCCGTCAGCTGTCATAAAACGGACGACAAAGCTTTGACTGATGGCA
AAGAAAGTGTTTGCCATCAGCCAAATCTTTGCGCAGGCACCCCCCCCCCTTTGTTGTCTG
CGAGCGGACGACAGGGATGCCCTAACGGCCGACGCCACCCCGCACCCACCCCCCTCTTTG
TTGTCTGCTAGCGCACAGCAAAGGGGATGCCCTACAACGGTCGCTGCAACCCCCACCCAC
CTCTCTCCCTCACTCTCTTTCTCTTTCTCTTTGTCTCCCCTCTCCCGAGCGTCGCCCCGC
CCACCGCAAATCCCCACGCCGGACATCCTTCCTACGTCCGCCCCCACCCCGCAACCTCCC
CCGAGCGCTGCCCCGCCCACCGTAGATCCCTACGCCGGCCACCCCTCGTAGGACCTCCTT
CCTGCGTCAGCCCCCCATCCCGCAACCAGCGCTCCTCCCTGACACGTCTCCATCGTATCT
ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATAGAACT
AACCTGGACTAACGCTATTTT