| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location | No map location |  |
Predicted Genes from contig_159038
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_20533 |
2 |
2237 bp |
MLOC_20533.1 |
Available |
Available |
LOC_Os05g49150.1, FRAME:-3, EVALUE:0.0, 13105.m05254 protein eukaryotic translation initiation factor 3 subunit D, putative, expressed |
CDS Structure of MLOC_20533
Contig Sequence (5059 bp)
>contig_159038 5059 assembly3_WGSMorex_rbca.fasta
TGCACGCCGTCGAGCTCGGAGGTGGTATCCCCAAGGGATTGCAGCTCTGTGACTACGCTC
GAAACACGGAGAGAGAAGTCCTCGACGTTCTCTCCTGTTTTGGACGCGAGCGCGTCGAAG
TCCTTCCGTAGCCTCTGCCGACGCGCTTCTCGGACGCGATCCACGCCGATGTGAAGTGTC
TTGATGGTGTCCGAGGCCACCTTGGCGTCATCCTTGGCGGCTAGGATCTGGACCATCTCA
GGTGGCACCGAGCTCAGGATGGCCCCTAGGGCCTGTCTCTCCTGTCGCTCCGGAGCATCG
CCGGTCTCGATCTCCTCCCAGAGGCCTGCACCTTGCATCTTGACGCGCATCAGGATGGCC
CACTCGGTGTAGTTCGTCTTCGTGAGGAGAGGCCACGAGACGGCCCCCCCGCCGCCGGTC
TCCCTTACGATGGTNNNNNNNACCACCACTTCCCCGCCGCCAGTTCTCCGAGTCCTGCTC
CGCCCGCGGCTCGGCGAGCGCACACGACGTCCCCGCCTGCAGGCGACCTCGATCTGGCGA
CCGCCGCCGGTGGTTGCGTCCCGACCATCGTGATTTCAAGAGGCTCTGATGCCAATTGTT
ATCACTGAGGATCGAATGAAACTAAGTCCGATGAACTAATCGATCAGTGGACAGTGGTTT
TTGTGTTGCCTGAACTGCCACTTTTCTGTCTGTCTATTCCATCATCTTATTCAGAGTACA
AAAAACAGGAGCTGAGCTCCACGATCCGTAACTCTCGTGCCATCCCACGAGTGGGTCGTG
TGCCCGCTGGAATCGGTCCTGGTTTGTTAGACAAAGACCAGGACAACTAACCCTATCGCT
AATTAACTAACCTGGCCGAAAAATGAGGATCTAAACTGACTGCAGTCCAGCAGCGACAAC
AGCCTGAAACGCTACAGTAAAGTTCAGAGAAAGGAAACTAACTATCTAGCAGCAAGAGAT
GCACTAGGATTTATTCAACAGCCGGCGCATGAGCGGCAGAGATAGCCGCTACGGGGCCTT
CAGTCCATGCGGTAGCAGGGGCCGAGTCAAGAGCCGAGAGCGGCCGGACCAGCACCACCG
CTCGGCAGATCCGATCAAGAAGACAACCAAAGTTAGCATCTGATGATTAATATCCTATAC
GAATGGATGTTGTTAATATCCTATACGAATGGATGTTGCCGCCGCCAACATCACCGTTAC
TTAATGGCGTTGCGTTACCGCACCAGAAGAAGAGGTGTTGTGGCCGAGCGTCTCCACGGC
CACGCGATGTTTCCCAATTGCTTAGGACGGATTTTATGTGCTGATAACGTATTCAAAGTA
AAACGAAAGACCATAGAAAAGATGTGAAGTGAATCGTTGTCTTTTATTGATGATTGAGTA
TAAATACATATAGCTCCAAGGGGATGCATCCACCAGATGCAAACAGTCGCAGCCCTCACG
CATGGTGGTTAGGGATAATAAAGATTTTCTTAATTAACACATGTGTCAATTAAATCTCAA
CAGAAGCAAGGGCAAAGGCTGAAAAAGAAACGTTTTCTTTTGCAACTTCCGGTTTGGCTT
GGGTCGTAGTTCATTTTCTAGAACTGATTCTGCAAGCTATGTAAGAATCTGATATGTTTG
TTTGAGATTCTGAATTTAGAAGGTCTAGAATCTGAGAATCAGCTAGCTGGAGCCCAAACA
AAGCCCACTCTCACTGATGCTCTTCTTTTCTCAGGGGTTAGAAGAGACCGCCTGGCAGCG
TGCAGATCGGGGACTAGCCAGCGCGTACAATTCATGGACAGACGGCGGCACGCATGCTAA
GGAGACAGGGCGCGGTCCGCGGCGCGCATGTTTAGGACGGCTCCGAACAGAGCAATGGTA
TCTTTACCCTGGACGAACCAAACAGAACAATGTTAACGTTGCCTTTACCATTCCTGTAGC
CAAACAGATTAAGAAACGAGCAAGATCACTGGCCTCATAGAGAAGATTAGATCGTTCCCT
GGACTCAGGTCGTAATATAACAGAATGGTCGGCAGGGAAAGAAGATGCCAGTTACGACGA
ACGGGATCAAACATCATTTCTCACCGTGCTCAAACCCGATGCAAAATTGCCCAAGAAGAA
TGAACAAATGACAGGTTGACAAACAAGCACACAGAATTGCAGCATGCTCCAGACAAAATC
CTGCAGTTCCTAGTGAAAGCAAGCATGCTTTGTACACTGGAATGAGGTAGTCTCAACTAC
AACAAACCACAATGTCCAGAACTTGAGAAATGCATAATTGACAATATGGAATGACTGATT
CCCTCCTCTTGCAGAATTCACACACAAAAAAAATGGTGATAAGAGATGTAGGAAAGATGG
TAAGTTGGTTGCCCATTAGCAATGGGTAGGCCGACCAGATTTCCTTCACTGGTACTTTGA
CTACAGCCGAATCTGGCAAGCAAGAGGATTGTACAAAGAACACAGGACTTGGTACAATGC
AGCCCTGATGCTCATGCTTTAATAGATGAACAAATGGCTCTGGAGTGCAATGGTGAGCGA
TCAGACAATGCTTTCTAGGCAAATGCATCTCCATCAAATATTAACTAGCACAAACCATGC
TAGTCCTGCACGCAGAGCTCAAAAGACGCAGAAATCTTAAGGCGGAGAATAAGCTTCCAG
GCATCACATAGTTTCCTAAATTTTCATCAAAAGAAAAGCATGCAGATACCAAAGGCATAA
AAATAACAATGAGATGCATTTGAAATGAGAGGAAAATGATTGTTGGCGAAAGAGATTATC
AAGCTCAACCCAATTGCCCACTTTCCAATTGTTGTTCTAAGTGGATACTGGGTATACAGG
TTTAAAAGCGCTCTCAACCCATATACAATTGCAACAAAGACAGAACAAACAGCAACAAGC
CTAGCCATTGCGGCACAGCATGGAAATTGCAAGACAACTCAGGGTACTCTCAAGTTACTA
AGTGCCACAAGGTTTTCATGATGCATTTGGCGGCAAGGCTTAAAAAACAGATGTGCATAC
ACAATGGACAAAACATACACAGCAGATCAACCACATAGAATAAATATTCAACTACCAGCA
TAGTCATTAATCCAAAGCAGTGCGTGCTAAGCTTAGCACATCCAAGCACAAAATTTAAGA
GTAACAAGTTTTCTCATGGACCAAAATAAGACCACTGTATCAAGACAAGGCAGATCAACT
CTTTAATCCACAAAAACAGATCATAAAACAGAAAAGACACATTATCTAGATAAAAGCAAG
ATGACCCATTATACCCTTCAAGCAGCGGCAGCATCTGCAGTCTTCTCACCGTCACCACCC
TGGGTAGTTGCTTTATTAGCCTCTGCCTCAGCAGCAGCATCCATCTCCTGTGCAGTAGCA
TCGACATCATCTGTAGCCGGGCGAACCTGCTCCTCCTCTGGAAGTGGCTCTTCAACATAA
TCGTTCTCAAACGCATCATTAGGAACCTGATAGATCCTCATCTGTGGCTTGGCAGGATCT
TTCACAAGCACATACTTGCCCTCTTCAAACTTCATGCATATGTCCACAATCGACTTGACA
ATTCCCCACATGTTTGCAGTGTTGAGGTTGATCTGGGTAGCAAAATCTCTTGGCTTGTAG
CCCATGACAGTGAGTATGGAGTGGTTGAAGTGGTCGCGGGGGTGCACACGAGACACATAA
CCCAACTTCATCATGTCCGCGCCAGATAGTAAAGCCTGGGCAGTCCAGCGAGCGAGCTTG
TTGGCATTGTTCTTGAGCTCTGTAGCAAGCACGGCACCGCGCTGGGACTCGAGCTTCTGC
TTCCAGTCAACACCAGTAATCTTAGGATCAAACTCATTAAGTGCATTAAGAGTGAGGAAC
TGGCGAGCACCACTCGGATCAACACCAGCAGCATGCACTTCACAGCGAGCAATGATGCTA
ATATCATCATCCAGCTTCCAGCGGCGATAACGGTAGCAAACAGGCGCCGCCTCCTCATTC
TCAGAGGCAAACGGGTTAGGCTCATCAAAGGTAACCTTCTCGCCATCACGTACCAGCACC
TGCTGCGAGAAGTTCTGGTTGATGTAGGTGGCCTCAACAGCAAGAGCCGGCGCCGAGTTG
ATGTCATCCTTGTTCTCAGGGAGCTGCTCCTGCGCAGTCTCGTTGACAGTGAGCAGATCG
AGCTGAGAGCCCTCGCGCTTGTCGAAGAAGAGCTTGTTGCCGACCCGCTGCACGACAATG
TCCCAGGAGAGGATGCTGCGGGGCGTGCACATGAGGGCGGCGAGGATGGCGTCGGTGGCG
AAGACGGTGGCCTTGTCCTCCTCGGCGAGGCGGCGGATGATGGGGTCGTCGGTGGTGGTG
ATCTTGAAGAACTGGCGGTTCTTGAAGCGCTCGAGGCGGCGGGCCGTCTTGGGGTTGACG
CGGTCGTAGGCGCGGTCGTACGAGTCGACGGCGCCGCAGACGAGGAGGTCCTCGGGCTGG
TCGTTGACGGCGAAGGAGAGCTTGGTGAAGTTGGCGAAGGGGATCTGCTCGAGGATGGTC
CAGTCGGGCTGGATGTCGACCGAGGGCTTGGCCGAGGACTGCTGGTTGCCGCGGAAGCCC
TGGTGGTGGTGGGAGCGGTGGTTCTGGTAGTGGCGCTCGCGGCGGGCGCGCTCCTTCTCG
GCCTCGCGGCGCTTGGCCTCGACCTCCTCGTCGCGGCGCGGGGGCAGCTGGGGGCGCTGG
TTGAAGCGCCACTTGGGGCCGAAGCGCGGGTGCTTGGGCGGCGGCTTGGCGTCCACGAGG
CTGAAGGACGAGTCCTCGGCGGCGGCGGCGAGCGAGTCGTCGGCGGACGAGAAGTCGAAG
ACCGAGTCGCGGGACGCGGCGGCCGCGTGGTGGCCGTGCGCGCCAGGGTGGCCCGGGTTG
CGCGTCCAGTCGGCGATGCGGCCCAGCTTGTCGGAGCGGGAGAAGGGCGCGAAGGGGATG
GAGGCCGTGGCGACGGCCCCGCCCAGGAGCGGCGCCGCGCCCGGCGCCGCGGGGGGGCCC
CCGCCCGCGGGGGGCGGGGGGGGGCCGCCGCCGCCGCCGCGCCGGCGCGCGCGCGACGAG
CCGGGCGTGCGCGCCGCCG
