Map Locations of contig_158956 (5638 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_158956

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_20396 3 1604 bp AK362627 Available Available None





CDS Structure of MLOC_20396






Contig Sequence (5638 bp)

>contig_158956 5638 assembly3_WGSMorex_rbca.fasta
GTAAAATGAGTGAATCTACACTCCAAAATATGACTACATACATCCGTATGTAGTATATAG
TGGAATCTCTAAAAGGTCTTGTATTTAGGAACGGAGGGAGTAGAATATATGGTGACAATA
TTGAGGCTACAATATTGAGGCTACGAAATAGGATCCTCACCCGTATGTATTTTTAGCCTA
AATGCAGGGATGAATGCATGTGAAATTGATTCATTCTAAGAGGACAAATGAAAATACCTT
GATCAGCTGCTGAGCAGTTTGAACTTGTGAGGCACTTCCTGCAATCTCGACCGTCATCTC
CCCAGGAACACCTTCTTGAATACTTATTGTTGCACCACTATGCTTGCGGATGTAGCTAAT
ATTGGCACCAGCAGACCCAATCACAGCATCAGCATAGGAAAGAGGAACTTGCATCTTTTG
CGAAAGCTGTCAATAAACCAAACATTTTTTTTTGGAGAAGGCAGTGTAAGCAATAAATAT
ATAGGCATAAAAAGAATACATCATGTTCATAATGGTCAAATTTAAAGCTACTAACTTGAG
AAGACCCATGCGATAGGTGTTGATTCCCTGAGGTAGGAGCAGCAGTTGGATTTGCATCAC
GTCCATATGAAGAAATCCCATAGTGCGGTTGTTTTTCCACATGGTGCACATTAGGAGGAG
GATAATAGCTGTCTTGTGGCCTTGGCGGCATAAAATGTGGGTTCCCGCCATAACCTGGGC
CACTGGGAGGAATGTTTGGTGGATGACTCCAGGGTGGAGGAGGACCCCACTGCTGAGGAG
CAGGCATAGGTTGCTCTCTGGGCGCACTGTGCACTTTCATCTGTTAAGAAGACAAATTAA
GTTTTATGGATACTTCTTTCAAGCAAACGATTCGCTGCATAATAGAATTCACTTACCTGC
ATTTCGAATAAAGGGAGAACACTACGGTCAACAAGAAACTTTCTCAAATGGTTTGCAATC
AGTTCCACTGCTTTGTGAACATCATGAGGTTCACCCTGTATCTCAACAACTCTGTCATCA
TTTAATGCCACAGGTGGCACATTCTCTGTGAAGGAAACATTGGTAAATGAGTGCTACTTT
AAATGTGTCATGTGTGAGTACGTGCAAAAATAAGTCTAATGAAATTTCAGTACAGTTGAT
CAACCATGATCTAGCAAACGAAGGAAAAATGCTTTTAGCAAGTAAAGAATCAATACACGA
GGAAAACAGTTGTATTGTATTGTACAACAAGTAAATTTCAGTACAACTGTACTTTGTATT
GAATTCTTAAAGGGCAGGCTTTTGTCATGCATGTGCATGAATTTCATACTTTAAAAATGC
TTTTAGCAAGTAAAGAATCAATACACGAGGAAAACAGTTGAACATACAAAGTATGCTAAT
CATAAATCATAAGCACCACTAGCATACGGTACACTGTATGTGCACAATCAGTCAGCAAAA
AAACCAGGAAATAATTTGGAAGTACACATGGCTCCCACAACGGGTGCCTATGTCCCAATC
CATACAGAAAAGGGTAACAATGCAAAACACGAGTCATAATGTATACTCCCTCCCTTCCTA
AATATAAGTCCTTTTAGAAATTCCACTACGGACTACATACGGAGCAAAATGACTGAATCT
ACATTCTAAAGTATGTCTNNATACATCCATATGTAGTCCGTAGTGAAATCTCTAAGAAGA
CTTATATTTAGAAACGGAGGACGTACAACTTATTGGTTCAATGCCACAAACTGCATATGG
CATGCCAGTAAACCACAAAAGAAAAAGAAAAACATCTGTCCTTTACTAGCTGAAGACAAG
CAAGGAGCTAAGCAGAAGAGGTCTTGTCATGCTATACTATAATAACAATATGGTGATGCA
TTGCCATGCTGAGACAACAATATGGGGGAAATATGAATCTTACCAAGAATGCGGAGAGCA
CACTTTGAGGCATCCTGTATTGATTTAATGGTTGTTCCTTGCTTGCCAATTAGGCTTCCA
GCTTGGGAAGCTGGCACAAGTAGCCGTGTTGGCCCTGCAGGACTAGCACCTTTCTGAGCC
TGGTCGGTTTCACTGTCCAAACCATCTGTTATTCTATTATGTACTCTGAGCAAACCATCA
ATGGCTGGAGGAACCAGTGCATCTGGCTCGTCCTTTGCTGAAATCATTACCTTTAAACAG
GAAAACAGTATCTAGATATCAGCAAGGAGGCACACAAACATGTTGCGCAAGGATGGATAA
TACAGGAAAGCGATAATTGGTAGCAATATCCACGAGCATTGAGGAGACACAATATGGCAT
TGCAAGGATAAGCATATATTTCCATCCTCCATTAATTGGATGAAAATGACCACAATGCTT
ACACCTACTATTACCCAAAGGCCAAAATAATCAAAATGATGCATGTTGCTAAACAAATTG
AAGGGCATCCACGTACACCTCCCGCATCTGATTCATCCTAGGCAAGAACAGCTTATGTTC
AGCTGGGCAGGTTTTGAAATATCAATCCTTCCCTATTTTAGCACAATTTATCCTAGATGT
GTTAAATAGGGCATGTTTGGTTCATTCCTGTGCTGCACTGTGGAATGCAATAGTACTTAC
TCTTTCTGATAACATTTATGTTGCATCTCTAAAATAATTACAAAATGTGAAATAAAACTG
CCAACTAAAGTAAGCAGCATGCCAAACTATGTGTTCCCATTGTGATTGCATAACTTCAGA
GTTGTAAATAAGATCATGACATCTGATGCTGAAGTGCTTATGCACAGCTGTATGGAGCAA
CATACATTATAAGCCCAGAAATTTTCCATCCAACTCGATATACTTGCTCATTATTTAAGT
AATATTATTATATTTTTGGACTGGGAATGCTGCTTCAGTTAGTATGAATTCCTAAAATAT
TAAATACTAAAGAAAGTGTTATAAATGTCATCTTTACTTGCACTTGTATATTTTGAATTT
GAAGATATCGTCATTTTCTGAAAGAACCATCTAGGATTTAATGAAATGGTTAGGATTAAG
CTTTTTCATACTATTTTAGCCCTGTAAATTTTGCCAACTGATTTCCTTTTGGCCAAAAAA
TCAAACGGGTCATGGAATTACCAGCCAGTATGTGGAGCTTCTTGACAGGGATCTTCATCC
AATACTCAAAAGACTTAAAATCGTATTTGCAGCAGATGAGCACGAAACTGAATCTGGTAA
CCATGACTGTTCGTCTATTTGGGATACGGAATGGGATTTGACTTGAGGCCTTAGAACGCA
GTGAGAACCTGCAAAGATTAGTTCCTTACTGTTATCGTCACCATTAAGTTTTCCACTTAA
TGACACTCTATGGATAGTTTGCTTGTTTTGGGTCTTATAGGTTCCATACTTGTGCAGAAA
CTTCTACGAATAGTAGCATAAATATCAATGTCTTGTGTTGCCTTGTTATAATTATTTTTT
ATTTGCATTACAACTATCATATTTACACTTACAACTTATCAGCTCTTTTTGTGGCAAGAA
CAATCCACAAGGTTCACGAACAAATTTGGAAGCTTGCTAGGATTTTGACAATTATACATA
ATTTCATAAGTTGGCCGATCGCAGTACTCCTACCACATGGTCAATCATTTTATGTTAGAA
GTATTTCAGAGTGAAACAATTGCATTATCCATGTAAAATCCAAAACTATCAATAGCTGCG
TCCATACTAAATTAAGTCTCGGTTAGGACTACACTTAACTAGTCAAACCAATATCATAAT
ATCCGTTTGTTCCTTGCTGGTTGCTGCAACAAAGGGCATACAGCCATTCCATATAAGCAG
GTGGTTCATATTGCATTGTTTTTCATGAATAATACAATAGCTAAAAAGTTCTTTATAATA
TCTATGGTGATCCAATCTTCCAAATTGTAAACCTTCAGTCTGATTTAGCAGTGATAGTGA
AATCATAATTAAATGGAGCACTATTAAGCCCCATATTAACCAGTCTAACTATTTTAAAAC
ATTCAGAAGTGTCTGAACAAAATTGCCTATTCGGAACTCAAGGACAGTAAGCATCCCTAA
TTGAGTAATTGGCTCCCAATAAGAGAAAAATCAATCTGCAACTACAAATGTAGTTTAATA
CAGCATAAAACCTGAAACCAGTTGATCTTTTCATATGTATGATTTTTTTACCAAGTGAAG
ACTTACTAAGGCCTTCTATTTATCAACTACTATAGGCATCTACAATAGTAAAGTAAGTAA
ACTATAGCGCATCAAGACAATATACACACAAACGTTCTCAACTTCTGATAAGCTGGTAAA
TAAGAATGTGAGAAGGCAACCATCAACACAGAATGTAACTGCAGTGTGCTGTACAGTCCT
ATAGCTACACATAGTTGAAAGGCTTGCTAGCATATCAATCCTTAAGACAGGCACAAAAAC
AGATCATCATTATACAACGAACCGATATACCGCTGCATCGTTCTATTGAAGAAACTATAG
AACAAAAAAAAATACTGATAGGGGCAACAGATCAACCTTGGTTTTCACATGTACTCAGGA
TGCCTAAAAAAGACCACAGACCTTCAACACTACTGGAAACTATGATAATAACAATTCAGG
ATGGAACAAGAGAATGAAGAACTCACAGCTCTTTCTGGAACACCTGGTGGGCCATCAAGA
ATCTTTATGCGGGCTTTGGATTCATCACACATTCTTTTGATAAACTCCCCTTTGCGGCCA
ATGAGAGCACCCACCTTTTGGGTAGAAACCAGTACACGGAACACACTTTCTCCAGGCCAC
CCAGGCCATTTCGTGTCTTCCGCCACCACATTGGCCAGTTGGTCTGCCTCAGCTTCCCCA
CCATCAACGTTTGCTGGCTCTTCAAGTGAACCAATAGCCTGGTCCTCTCTGTTCTGATCC
CCCATATCCTCATCTTTCACAGTCACCTGCGCTTCATCGCTGGGGTTCTCAGATTCTTCG
TTGTTTGTGCCTTTGGGTTCCTCGTCAGCAGATGGCTTTTCTGCTTCTTCCTCAGGATTG
GCTTGTCCCTCAATGCTAGCATCGGCTTGCTCGCCGCTGGTAGGATCAGGGATGTCGTTC
ATCTCATGCTCCACGACAGCAGGAGTCTCAGCAGGCCCATCCATATTCTCTGGAGCACAC
AACAAAAAAACCACTGTCAACCACAGCCAAGTAGCATAAACACTCTGCACATACTCTAGA
TGCGCTAGTCACAGCATCAACTAATCTCTGCACATGCTCTAGATGCGCTAGTGACAGCAT
CAACTAATCACTAAATAAACCAACCAGATGCTGCTCTGGACCACACCAAGCACACGGGCC
GCGGATCCACGCGCAAACCCTAAGCGTCAGTCGCCAGGAGCGACATGGAGGACGCACGGC
CTCCGAACCCTAAATCCAGAGCACTGGAGGGCGCGCCACCATGCCCCGTACCGCGCGTCC
GCATCCAGAGTAAGCCAACACACACACGCGCGCGCGCGTGCAAGGCTGCAGCCGCCAGCG
AGTTATTCACCTACGCTCGACCCCGCGAGCAAGCTACAGGGTCACGGATGGCAGAGTGCG
AGCGAGAGGGAGAGAGAGAGAGAGAGAGGGTGCAGAGCGTGAACCTTGTACGGATGTGGA
ATCAGGCCTCGCCGGAGAGGAAGCACGGCCGCCGCCGCCGCCGCCGCCGCCGCGGGGG