Map Locations of contig_158953 (9861 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_158953

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_20390 6 3219 bp MLOC_20390.2 Available Available LOC_Os07g48360.1, FRAME:-3, EVALUE:0.0, 13107.m05172 protein helicase conserved C-terminal domain containing protein, expressed





CDS Structure of MLOC_20390






Contig Sequence (9861 bp)

>contig_158953 9861 assembly3_WGSMorex_rbca.fasta
AGCAGGCAAGAATGAAATGGATACTTATCGCTGTATGACTGAAACAATGTTTGTACAAGT
TTAATAGATTTATGAATTAAAATATTTTTTTGATCCCGTGACAACGCACAAGCATTCAGC
TAGGACGATGAAAGGATGATTCATGACCCTTTCATTGACCAACGACAACAAAAGATAAGG
TGTTAAGTGTAGCGCCAAGACAATCTAATAGATTGGATCAGATTTGACGACCAACAATAA
TGATAGGGGACAGTAATTTTGTTGTTCCGTGGCAACGCACCGGCACTAAACTAGTCATAA
ACTAGTAGTATCATAGATGACCTCATTTATTGACATGCATGACACATTTAACATGTTACG
GTATCAACCTATGTTACTCTAACCCTATCTTTCATCTTTAATTGACTACCACATTAACAT
GTTTGTTAGTTCCAAATACATGATACCACCTAAATTACTCCCACTATGGCCAGCCTTAGA
GGTGTGGGATAGGAGCATAATGCTGACACCTGAGAGAATCTGGCCTTGCTGGGATATAGA
TGGATGGTTGAGGCAGCGTCGTCACAGCAAAGGTGGCGCAGGTGAAGAGTAGAGTAGTGA
CCAGTGACAGTGACCACAACAACTGGGTTGGAACCGAGTGCACAAGCAACTGGTCATCGT
GAAAAACCTCGGACTATTCTACTCGTAGAAAATAAGATACTGATAATAAATAGCAACTCC
CATATGAGCGAGTCTAGAAAGGCTCGGACCAGACTAGTAATAGTGAAATTCTCCATTCTA
CTCATCTAAGCTCACTTCCTTGTGTACCTTCGATCGAGACATACTCCCTACTACTTAGAA
GCAAGCACCCACGTAGCACTATATACAGAAGCAACGAGCATTCCCGTCCCATGGCAAGGC
AAGCACTCAAAATATGGAAACTGGGATGCAGAGCTCCGTCAAGGTCCCAGAGCCCCAAAC
CCATAACCAACATCCGCTGACGCCACGGACAAGCCAAGAGCAAGCAAACGGCGCCATCCT
TCCTTCCCTTCCCTTCCCTTCCCTTCCGCCGGTCACAGAACCAAGTAGCGGCCGTTCTTC
ATGTACACCGCGAAGCTGCAACGGAGGCTCTCCAGCATCTCGACGACGGACTCCCGTTTC
GACCCGCTGAAGTGCTTCACGGCGTCCTCCAACGAAACCTGCAGCGGTTTGCACAGGTAA
GGTTCTGAACTTGGTCAGACAAATCTTCCGAGGGGAATGGAATGGCTTACCCCATTGCGG
CTCTCGGCCAGCTCAAGTATAGCGTCCTCGGTCGCGACATTTGCGGTCCCTTGCCCGTCT
ACCTTCTGCAGCTTCTTTACTGGCTCATCCACATTGGCGGCCTGGGATCTCTTTGGCGAA
GGGCTTGAATCACAGGCGCCTGATATGATGACGGGTTCTCCCTGATCACCCTTCTCCAGA
GCTTCGCTGCCATGGGAAGAGGGTTTTGCCGACTCGGCTGTTTGGGCAGCAGCCCCGTCA
GTTGGAGCGTTGCCAAAAGTCTTCTCTAACACTCCAAGATCGTCTGCTGCGAAGAATATC
TTGATCATTTCGTACGTTACCTGCAGTTGCCATGCAGCATTTTGCCCAGCAGATTAGTCA
TTCCCTAATGGTTTGGATGAGCATACAATGAGCTCGGAAGTGGTTCCCACATCCGGTGGA
ACTATATTCTACTCAATCCCACACAGAAATGCAATAATGAACAGTGGAAGAAGAATTACA
TTTTCTGGAAGCGCTTCTTTTATTGGCTTCATCCTCTCACGTGATCCAACCTTTGCAATG
GCAAGACGGATCTGTGAAGCTATCTCAGGGGTCAGTCCCGTTTCCTCAAAGAACCTATTC
CAGTTCATCTCACATCCTTCCCGAGCAGCATCAAGTATGTATTGGATAACCGTCTGCTCT
TTTATCGGCACTGCTCTGCGAAAATGCTAGAATGCACTATCATGTCAAGTGGTGATCTTC
AATTTAAGGTCAGTAGAAAACTAAAACGAAAACTAACTCACTGCAATTTTCTTGAATGAG
TACTCCTGTTTCTGCCACAGTTCCCATGAAGTAAATTTGGCATCACCCAAGGTCCTTGGG
AGACTGTTGTTCACAGGTTTTGGAACTGACATCATATCCTCTACTCCTGATGAATCATCC
AATGAAAGATTCAACTGTTTTGATAATTGTGCGATATTTTGGACAAAAGTGCCACTGTAG
CGCGAGATGAAGTGCTGGAAACAAAAGGTCAGATGTTATGTGAGTAGAAGAGGGAAAAAT
ATGATAGCACTATCTTGCATGGTCTTTGTTATAGCATAGCATTTGCTAAGTATCATTATT
AAGTGATACCTGGTTAACACCATCAATATTGGCCAGTCTAGCTCCAGTAGAAGGCCTAAT
CTTTGCAAAGTGTCTTAAGGTCTGATCACCACATATGGCATATCTGAAATAGTGGGATTG
TATAGATTCAGTTCAATGACTGTTCCAATACCTAAACAGCAAAATATGGCATTGAGATTC
AAAATTTAACTCACGGAGCAGTTCCCAGATCCTGGGCAAGTTTCATCCTGAGGTTCAAGA
GCATTTGGTAGAGTTTCATTTCCTCCTGAAAGAAAAACAACACCACAAACAAAATCTAAA
ATCAAATGTAGAAGGAAGAAAACAACATTGTGTGAACAAAAAATGCACAAGGCCTAAGTC
ATTTCATGAGTAAATCCGATCAACTCTACCTCAGATATCTTTTCAGATTCTGTGGTGGTT
GAAGGATTTAAGCCCACTTCTTTATTCTGTGAACTACCCTGCTCCTCTAGCCCAATCATC
TCTGCAGTCAGCTGCAAAACCAGTGGCGTTCCACCATCGGAGAGAAATTTGGCCCCTTTT
GGACTAACACTGAAGATGGAGATGTAGAGTTACTATGGTGATTACTTAAAATCACCATAA
CGGAGAAGTACCAGAGAAAAAGAATCTGGGGCATCACTAGGACAAAACAGACAAAATAAA
TACTCAACAAAGCACCTGACCAATCTAAATCCATCACTGACAGTCTCCTTCAAGTAACCT
GCATAAAAGTAACAAGGAAAAGGAAATAAATAAGAGCATCCATAATAATGATGCCAAAAT
GCATTGCACTGGCAGCTGATGAATGGTGTTTGCTCAGTGTATCCAACTACAAAGTACATA
TTATACCGCTTCAAGTGTAAATTTCATGAGTTTTCTTTCAGTGAGGCTTAGGGCCAACCA
AAACTGTGATATTATAAGTCCGCATGCGGAGCAAGTATTTTTTGTGGAATGCCTTGCTTT
AGCCAAGAAGTGAATAATTGGTTGAGTATCCAGACTTCATAGCAGTACCATGTGCCATAA
GCAGACCGCCAAGTCCTTTCCACCAGTTTGGCGGATAGTCTTTTCCCATTGCATGCATTG
GAAGTTTATCGTAGTTCTTCTCAACTATCTTTTTGACCTACAAAAATGAGAAAGCACTTG
TTATACAACATCTTTCTTTTAAAAAATGCAGAAAATATCCAAGGTTGTTAAGAAAAAAAG
TACTGCTGTGTGCAGTTTAGGTGCAACACTTTTGCAAACATGTACAACAATACACACTCC
AAAACTTATGTTTCAAATCCCTTTAAATGTTTACTATCAACAATAATGCCACATATGGTT
GCTCCCAACTATCAGCGCATAGACGGCCTCCAATCAAGTGAAACTAGCCAATGTATGTGA
CAAACTAAGGAACACCGCAAACATCAATGATAGAAAAACTTACTCGTGATCCACGGAGAA
CATCAACTGGCATATTAAGGCCCCAGCGTCCCCCGCACGACTTGACACAGGACAGCAATA
AGAAAGATTCTTTTGACAAATCCCTCTCATTTTTTGTCCCAGTGCAATTATCGCAGTTAC
CTGAGGATTAAGGGGCATGCCGTAGATCAATGTCACAGTTGAGACAATACTTGATGTAGC
ATGTGCCTATATAGCGAAGAATATGCGGATATTGGTACGGCAATAATACAACATTTTCCT
TACACAAAGTACAGGGATACTGCAAGTATATATGCATTTACAAGAAAAATAAAACGTGCA
TAGTAGCTGACAGACAGTGCTTTGTGTGGAAGGACCTTTCTAGATTTGGAAGTGACTTGG
GCCTGTGATGGGTTCTAGTTGAAGATGTTTTGCTTTGGGAATACATAAGGATACTGTGTC
CTGTAGTTTGTAACCTTCATAAAACAGAACTCCCTCAGCCCCTCCATTTCCAAATTAATT
GATATGCTCGTTTTGTACCAAGTCAAACATCTCTATATTTGACAAAGTCCATAGAAAAAT
GTGCTAATATCTATAACATAAAAAATACATTCTATGATGAATCTAATTACACTAATTTGG
TGTTACAGATGTTGATATATTTTTCTAGACTTGGTCGAACTTCACGAAGTTTGATTAGGA
CAAGCTAGATCTTCAATTAACTTGGAATGGAGGAAGTCATGACTACAAAAAGGAGATTTG
ATTTGGCCCCTCTTCAAATGGGCAATATTTGCAGATGAGTCCCAACTAATTCTTAAATTA
TAAACATACCACAGTCAGTGTAACGCTCTTCACCAAAGTATTGCAGCAGGGATTTTCTGC
GGCATGTAGCAAGGAGGCAATATTTCTGTGCTGCCATGAAGGAATCCATGATGGCATTCT
TTTGAGTTGCCTGTAGATGAGTAAGAACTTCACACCATGAGATAATGAAATAGGTAAACA
GTACAAGGGAATCAAACTGCAGGTGTTTATGTTTATCACTTAAGTGTGACATGAAGTCCT
GATTGTGTGCCCAATATTTACATACATTTGTTGCTTCAGAACAATAGAAGTCAGCTTTTG
CAAAATCACTTCTTTGGTAATACAGCCAGCACACTGAAGGCAGTCCATCTCTTCCACAAC
GCCCACTTTCCTGGTAGTATGATTCTAGGCTCTTAGGACATCCATAGTGTATTACACACC
TAACATCTGGCTTATCAATTCCCATTCCAAATGCAATAGTTGCCACCATCACAAGTACTT
CATCTCTAACAAATGATCTGCAAAGGGGAACCATAATTTATCATCAAAATCACTATGTCG
TCAAGCCAACATTTGTAAAAAGCTGTATGAGAACTCACTACACTTAATTCCTTGTATCTG
TTTTGTTTTCTCATTTAATTACTTGCAAGATCTATGGCATTACTAACACAGCATTATCTT
GGCAATGTTTTGTAGTGTCAGATGAGATCACAACCCTCATGATTGTGAATCATAAGAGGT
ATAAGATGGCTTGATCAGGCATATTTAACTAGACAACAAAAACATTTGGCAAATCACTCT
TTAGATGAAGTGTTTAAAATGAACTCAGAATGGTACTCTGAGCATTCATCAATTCAACGT
ACTTAAAGAAAAAAAATCCAAAATAAATCAAAAAGGAAAGAAGAGACGGTGAACAGCCAA
ACAAAAAAGTTGGCATGTGCATAAATGGCAGACCTATGGGATTCCTCTCTAGCTTTGCTA
CCCATTTTACCATGGTAAATGTTAGCTTTGATTCCAGCAGTGATCATTGCTTCATGTACC
TGACAGAGAAAAGTTGCATTTAGTACATTAACTAGCTAAATACATGTGTGTTGCTATGGA
ATTTAAATGCTTGTGCATTCCTATAGAAGCATTTTTATTGCAAGAGTTGCTTAAACACTT
CTACAATTAGTTTGCCAACTTTGTGCAAATAAAAAAATATCTTAAAATATACATCAATCA
AATCAACTGATCAAAAGATCATGGTACCTGTCTACTACATAGAATGTAAGATAATTGCAG
TAATTAATCTTTTCACCGACTTAATGGGAAATTTGTGAGGGTCGATGGACCGACACCAAC
CCAGATCATTATAAGTGTTAAGGTAAAGATACATCAACCCTAGCGTAATCTAATAGGCAC
AAGGTATATGTAAAAAGCAGATTCTATGATCAAAACTGGAGCCCAGAAATTCCCATATTA
CTCCCAAAAAATGCATATAAACTTATAATTGCCCATCCTTTAGGATACATTACCTACAGT
ACAGATCTAAATGCATGTACCCAACAAAAAATGGACTACTCCCCAAAATCTGTTACATCA
GTCAGAAGAAGAAAATGCCTGATACTATCAATGATCAACAGACAAGTATCCCATACTTAT
TTCAAGCTTATTATTTTTCTCCAAAAAAAAAGTCTTACTAATTCAGCATGAACTTAACAT
TTGCCTATAGAATTTAAAAACCACACAGCTCCCACTTACAAGCAGCCAAAATCCTGGGTG
CTTGTGTACCAGTTGCCGCAAAATATAGAAGAATGAAAATATACAACGCTGGAAAATACA
AACCTGTTCAGTGTCCCGGATAGTGGTACAGTAAATGATTGTTGAGCCACCCACAGTGCA
GTTCTTTGAGACATCTTTCACAAGTTCACTAATAAAGGACATAGATCGGTTGTATGATTT
CACGCCGTAGAAAAGGTTCGGACGATCAAATGATCCGATTGCAACGTGAGGATTGCTCAG
GTTCAAAGAGTTGGCAATATCTCCACGGACCCTACAAAATCAAATTGAAAGTTAACAGGA
ATTTGGTACAGATAGAAAAGGGATATAGACACTCTGGAAAATAAATAAATAAAGTAAGCA
ATTATAATAGTGAGCAAAAATATTTATGGTAATAATATGCAGTAGCTACAACAAGCAGAG
GAACAGAGGAAAGGCATTACTATTGGATATCAACAAAAGAAGGATAAACAGGTAAAAACA
ACTGATAGTGAAACATCCATACCTTTCTGTGGCTGTCGCAGTTAGAGCAACAAAGGGAAC
ACCCAGAAGGTGCTCACGCAATAAATGCAGCTGCTTGTACTCCGGCCTGCATACAACAGA
GAGAATTACAATCAGTAATAAAAGAGAGAGAATTGCAATGAAGAAAAGAAGCTATAAGTA
ATAAGTAACAGACTGACTAGTCACTAAGTTTGATTATAGAATTTAAGGGTGAGAGAAACC
GAGCGAGAATTGATGGGTGACATGAACTGACAGCTTTTACATTTGACATCAGCACACACA
GAATTTTTGAAATACGTGCATATAGGACATATCAAAAAATTAAATGAAAGTAGATTATCA
GCCCTTTTGCCGAAGAAATAATTCACAAAATAGAAGAGCAGATGACCTGAAATCATGACC
CCATTCTGATATGCAATGCGCTTCGTCAATGGCGAACAAGCAGATTCCGGAAGCCTGCAA
GTTACTCCAGAACCTGGATAGAAGATTGAAAACGGTAAATCAACAGACCCAACACCATAT
TATTAAATTCTACAAGGGACCAAAGAAGACACAGGAGCAGTAATTTGCAGTTACATATGT
GTGTGCCTTCCAGTTCAGCTAAATAATTGACAATTATAGCTTTGTAAGTGCTGCAAGCTA
TAAGTCAATAACGACCATAATCTGCTTTCATATCACAGGATTTTCACCTTGAAGGAAGTG
CAATAGCTTTCTCAGGGGTCATGTACAGAACATCATACATGCCTTTTTCAGCCTCACTGC
TAACAGAGCTATTCATTTGGGTGCTGCCAAGATACTCAGATCTCACACCATGTTGTTTTA
AACTCATGACCTGTTTGAAGTAAATGAAACCCACAATAAAAGCTTCCGTGTCAAAGCAAA
CCCACAATAAGGAAAGCGCCAAAAATGTTATACTCTATCTAACAATCATACCTGGTCTTG
CATCAGTGACAGAAGAGGGCTGACAACAACAGCTGTCTTCTTTGCAACCAGTGGAGGGAT
TTGATAGCTGCCATGAAAAGAATTACCGTGAGAAAATTACACTTACCATATACAAGGGGA
AGTAATACCATCAAAATTTTAAACAGAATCATATTTCATTTACTTCAGATAGGCTGCAAA
TGTTTAACACATTTTCAGGTCCTTAACTAATTTTTTTTTCAGAAAACTCAATAGTTTTTC
TTTGACACGATGACAAACACACTGCCCAGTTTCAAGAAAGAACCACCCTCGCCCATTTCT
AGAACAAAAGGGTCAGTAAACGGTTGTGCCAATAGTAACATCCACTATACATATGTGTAT
AAACAAACAAAGATCTTCCCCAGCAGTTCCCTGTTTGGTACATACAATTGACAAGCTAGC
AGTCACCGTAACAGAGATGAGATGCTTATACATGACTGCCCATTTATCAAAGTTACAAAA
ATGTCGCCAAAATGTGGAACAATAAGACATACTTCCCAATCTCCGACCAACAACCAACTC
CACTGGCACACAAAGCGTAACATTTTCTAATCATGCTCTGCAAAGCTATCTCAGCCTCAC
ACCGATCCGACGACATGTTGGAATACTAGATGAGTTTCGATAATCCGTTGAAGATGATTT
AACCACTTCATAGCTTACAGGTCCCCAACATCTATTTACCACCAAAATGACTACATTTTC
TCCCAAAACCAGCAATGCAGATCAGACTGCTGCCCAAAGCAATTTTTAGCAATCGAACCA
GCAAAATCGCTGGAGCGCAAAGCAGGGCACTGCCAGGAGACGCGGCGCAACTAATCTATC
CACCAAATGCAGCGCCCAAACCTGGATTCAGCCGCCACGGTGCTCAACCTGCAAATCCAC
CGACCTCCACAAACATCCTAAACAAAAACGAAAAAAAAAGAAGCGGCGCCTAGCGCCATC
CCACCCTCCACGACCGCGACCAGGCAAAAAACGGAGCGCGGGAGCGAGCGTGGGGGTCTG
TTCACTTACCACATGGACTTGCCGCTGCCGGTGGCCATGACGACGAGGCAGTCCCGCCCC
TGCATGATCGTGTCCACGATCTCCCGCTGGTACGGCCGGAACCCCGTGTACCCGAAGTAC
CTCTGCGGCCAGAGAACAGACGCGGGTTAGAATGGCGCGCCTCGGTGCCTCTAGGGTTCA
GCCGCCGGCTAGGGTTCAGGGGGGAGCGGAGCGGGCGGGCGGGGAGGGAGGGTACCTTCA
GGGCCGCCTCCATTGCGGCGCCGGAGCGTCGGGCTCCGCCGGGCGGAGATTGGGCCGTGT
TGGATTGGGGAAGGAAGGGGGCGGGGCGAGGGGATTGGAATGGAACGGACGGGTGGTGGC
GAGCGGCGATGTGGGGGTTTGGGGGAAGGGGTTTTGGCTTGCGGCGCTCTTTTATCTGCG
TTCCCGCCAATTTGGCTATTTTTTTCTCCTCTCGTGGACTTTTAGCGGGCCTGTTGTGGC
TCGTCTTTTGGGCCGGCAAGGCATCCACAAAAGTAGTACTCCCTTCCTGCTTAAATGGCT
GATGCCTTCATTGTACGAAGAACAAGAGGAGCATGAAGAATTGACATTGTGCTGTCAAGC
TTAACATGATGAAAACATGTGATCGTGTCGAATGGGTATATTTGGAGGCCATCATGAAGA
AGTTGTGCTTCCACGATTTGTTTGTGCGTCAGGTTATGAGGTTATGAGAGGAGTTACTTT
AGTATCTTTCTCTCTACTCTTTAATGGCCTGCGGAGTAGTGAATTCCATCCTTCCAAAGG
CATCACGCAGGGGGACTCGATCTCTCCCTATTTGTTCCTATTGGCGGTAGAGGGACTTTC
GTGCATGTTAAAGAAAGCAAGCAATGAGGGGCTGTTTGAGGGCATCCAAATTGTTGTCAC
CGCACCGAAGATAAACCACCTATTGTTTGTGGATGATTCTTTGCTCTTGAGCAAAACTAC
TGCGGAGATCGCCTCCAAAATTAAGGAAATTCTAAGCTTGTATTGTCAAGCTTCTGGACA
GTGTATAAACCATGAAAAGTCTTCCATTTATTTTGGTAAGGGATGTCCGGTATCACAAAG
AGAGATAATTAAAGGTATTCT