morexGenes - Barley RNA-seq Database

Contig contig_158947
Source Contig contig_158947
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_158947 (6780 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_158947

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20381	2	1855 bp	MLOC_20381.2	Available	Available	LOC_Os01g56630.1, FRAME:-3, EVALUE:0.0, 13101.m05999 protein dymeclin, putative, expressed
MLOC_20380	1	333 bp	None	Available	Available	None
CDS Structure of MLOC_20381

CDS Structure of MLOC_20380

Contig Sequence (6780 bp)

>contig_158947 6780 assembly3_WGSMorex_rbca.fasta
GGGACGGAGGGAGTACTTTGTTAAGTTCAAGGAAGACAAAAAATAACATACTGTGTATAT
ATTCTCAAGCAATTCATTGAAACGAGGATGGTTCTTGAACGGCTGAAAAACCTCTTGTCG
GTGCAATACAGCATACACAACCTGTTGATGAACATGTTAGAAGCAGTTTGGTTCTGCCTA
GGTATACTGCACTGGGAAATAACATACCTCAGGATTTCTGGGTAATGCATATGTAAGGAT
TGCATTGATGATTTCCAGAACGATTCTTAAGAAGTCAGTGTATATGTGAAGCTCCGTTGA
CTGCAAAAGTACACCACTGTTTACAGATATGAAGGGAAGAAAAAAACACAATGGCGCTAT
TATGAAGCAAGATAACAGTAGAGTACCGTATCATCTGAAATGATGTCTGCTTCCATTTGA
TCAGACATAACTTTGAGAGCCTTGTCATTTTTTAACTCGGCTAATTTGGCATACCTGAAG
AATGGTAGATAAGCAAATGGACAGGTTAACTTCAATTAAGTGTAGAATGTGATAACAAAA
CAGAGAGAGATTGAGCTACCATACTTGCGAGAAAGCATGTCGAAGAGGCTAACCAGCCTT
TGAGATGCATATGCACTCAGCCTATGCGCATGAGGACCCATGTTTGCTAGAATTGCAAGA
CAGTTTGTGTGAAGGTAGACATCCTGCAAGTATATACAAGGTTGTCATTAGACTGATATG
AACCAGAAGTAGTTTGACATGCAAAAGGAAACTTCTACTAAGGTATGATCGGATGTCTTC
CTTGCAAAAAGGAAACTTCTACATAGGCAGGTGTGTGACATGCATCATTTCCCTGAAGAA
CAAAAACAAAATCGTGTACATACCCGCAGCTTGGAGAGGTTGTACTTGATGGTTCGGATT
AGTACTACGACCATCAACGATCCCAGAGAAGTTTGATGCATGAGGCGCTCCTGGTACCAA
GGAACACTAGGAAGCACCTAAAAGAGAACACTAAATCATGAAAGAATTCATTAATAAATA
AACTAGACCTAGTTGATTTTCTTACCAATTTGTGCACACTAGCATTGAAGGTTGAATCTT
GACTGAGTATCAGGAGAATTATCAACAGCATGTAGATCTGATTGGAAGTCTTCCTTGATG
CATTGTAGAGCATTTCCAAAATAGGCATAAGCTGTCAACAAAATCCAAACTATAATAACT
CAAGGTATTGAGGGAAAACAACTCAGGCAGTCGACAAATGATATTTGTTAATATATGTAA
TCAAAGGCTAACCTTACATGTAAAGTGTGTGCTGGGTTATTACTTTAGCTATTATTCCTT
GGTTTTATTATGTACTCCCTCGGTAAACTAACATAATAATGATCTAAAATATTTTATATT
AGCTATTATTCCTTGGTTTTATTATGTACTCCCTCGGTAAACTAACATAATAATGATCTA
AAATATTTTATATTAGTTTACAGAGGGAGTATTTCCCTATTTGGAATTTGCTTTCTAATG
TTTCATGCTGACTGCCACAGAGTCACAAATTTACTATGCCAATTCATGGAAGGATGGGAA
CGAAAAGAATTCATAGTCCAGCTCTTACTAATGAAAAACATATTAACCACTGATAGATTC
TCTCTCTAAAAGGGAAAATTAGTTTAAATGCAACTGTTTTATTAATTCAAAGCATATTCT
GTCCGACTATTAAAAGTCCACATGCTCCAACAAGAAGGTTACAAACATAATTGCAAGAAA
ACATACCAAAGTATCCAAGTCTGTTCGAACCAGAACATACTCCTGAAAATCGCAGTTCCC
ATGGACCAGAGAATAGAGCAACAGAACTGAGCTCTCATCTTTTAAGCATCTGTATGGATA
GTGGAAACAAATGAATTACACACCACTAAGGTCTTTTGGTACATATAATAATTTACATCC
TGAAACAAGATCTTTGAATAAATAATGATAGGCCCCAGATAATGGGGCCACAGAAGATAT
CAAGATATCCAATTTTAAAACATTAGTTTTGAAATTACTCACATCAGTCTCATTACTATC
ATCAAACCCTGATATGTGACTCCATTTTGGAATGTGGCGTTAACTATTCAGTTCATAATC
TACGCATGACCAAAATTATCGCTAAGTGCAGTGTTGTTTTTATCCATCAAATCTGATATT
AGACCGGAATAATTGCTATATTTTCATTTGTGAAGAAAAAGGAAATTATCTCATTGTTTT
CTGCCCCAGAAATATTTGGTTAAATTCCACAAATCTAATAAATAAAGTACGAGCATATCA
TTAAATTAGCATGATGATGCATTACTTACGTGCCAAGAGCATCAAACAGCGATGCAAAAG
ACAGCCTGACAACGGGTCCATTTTGAGCATTTCCCTCAACATCGGCATGATCAACTGCAG
CATAATTCATTTCTGCGATTGTTAGTGATACATATGACTATATGAGTGCCACAATTTCTC
TATATTGCAGGTGCATCTTACATTGAATGTCCTTAGCATTGTTTATCGCCTTGCAGTAAG
GGTTCTCATGAAAAGCTGGTGCATCCTTGACATTGGTAGTTGAATCACTCATGTAGACAC
CGTCGGTTGGAATGGACTCGTTCATTGAGATGCATTTTCGGTAGTGGATCAGAATAAGCA
GAACAAGTAAACTGTTATCTGCCAATTGACTTGTCGCACCTTCAGCACTTGCACTTACAA
AATAGTTGAAAGTATAATATGGCAGTAGTACAAAATTTGCTGCAAAACCAGATGGACGAA
TAAATTCAAAGATTTTCGATAACTGAAACATTTTCGTAGTAGGGAATATAAGGTGATTGA
AGTGTACATGGTAACTTCCTGAGTAAAATAGTAGGGCCTGTTTGGTTAGTATACTAAGGT
TACCAGCATTTGCCACACTCTTTTATGCCGAACATGACTAAGGTTAGGCCATCAAGATGG
GTGCCACACTCTGCTAGACTTAGGACGATCAAAATTGGTGCCACACATTGCCAGGCTAAG
GGAAACTTGCCACACACATGTTGAAGGAAAGGAATATTATCGCAAGTGTGACTCCGAACC
AAACATGTGATTAAGGGGCTGTTCTGTTCTCAGCATAAGCCTGCAACGCCTAATTATATG
CATGCAACAATTGCTTATGTGGGTATTTTGATTGGTGCCATAGTTGTGCATTACCATCTC
ACATACAGTCAAAACTTAACAACTTGTGGTGTGGCAAAGTGTGGCATGGTTAGTAAATCA
AAGTATCAAACAACCAGGCCCTCAATTTTGGCAAATACTTCCTCTGTTTCTAAATATAAG
TCTTTTTAGAAATTTCACTAAGGGACTACATACGGANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATACATCCGTATGTAGTCTCCTAGTGGAATCTCTTAAAAGANNNATA
TTTAGGAATGGAGGGAGTAATACAGTAGTCACAATAAAGGCGTAAAACGGCATAGCATCA
TCTATTGTAACATGAAAGATATGAGAACTACAAAAGAAGTTAATACATTCTAAAAAAATG
ACCATAAGTTGAAAATGTTCATAGTATTGGCAGCATGTGAATGAGTTGCATTGACATGAC
ATCAATTGTGATGATGCAAAAACTATAAGCACTTTCTGTGGAGAATATAACCCGCATTAC
CAGCTGCTGAGCCAACTCGTTGCAGAACACCAGGCCCACCATCATCAGAGAAAACAGGGT
GTGAATCATTTGAAGGAATTTGTGGCCGTCTTACAAAATTAAGTAGCAACTTTTGAACAA
CCGAAGCTACTATGGAACTGTCCTGCAGAAGACAGATGTGGCAAAGGAACACATCCCAAA
TTAGCTCAATAATATCTATAAATAAATAATCATATGCAGATTCCATTTTTACCTGAAGCA
TAGCCGCATCAATGAAAGGATGCACATCTTTTGGTTCTGGAGATGGTCCAGAACATAACT
GAGTCGACATAAGGACTAGCATCAAGTTCAGAAGCTCGTGATGTAGGTAGCATGACTCCG
GACTGCATATAAAGATATTAAAACAGTGAAATTCAAATGGCAAACAAGCATTTAAAATAG
GAAAAACTAGATAGGCATACACCATCCATCAAGATACCTTACATCTACACTACCAATGTA
GTTCAGCACCCCCTTCATCAGAAAATACTCCACACTTTGGTCTAGAAGGAGCAGGGAATA
TAGTATATAATTAGAGTTTACTATATCAGCCATACAAGAAGCATTCATAGTGCATTTGAA
ATTTTAAGATCATTTACCAGAAGGAAAATTTTCCAGCCCCTTTTCATCCTTGTCGATGTC
AAGGCATAGCTCTTGCCAATTATCTGCCTTGGCATTCTCAATAATGAACTTGAGAAATAT
GGATGATATGTAGGCAGCATTGATAGCCTTTCTATAGACACTAGAAGATACAGAAGAAGC
TGATGTGCACTCTTGCAAACACCAAACCAAATGGATCAAGATCTTTGCAAGATGCTTTGT
ATGGTAGTTGTTCTGCGCTGCACATACACATAACCCAGATTGTCAGACCGATGAGCCAAA
GACAATTACGAGTTAATTACAGGAACTAATCATACAAATTCTGTCAAAGCATAGGAAACA
TAAGGTTAACACTTAACAACTGGTATAATCAAGTAAAATATTTAGGGATGAACTACAGCG
CGATGGCACTTGGCGCGGTGTTCGCGATGGCACTTGGCGCGGTGTTCGCGATACCACGTG
ATAAGCCCACATCATTTTGTGTCATTCACATCACAGCAGCATACTCAGCCGTGTGGGGCC
CGATCGCACGTGTCCAGTACACCACACTCTGCTATGGGGGCAGCGAACACTAAAAAAGGG
CCGCCCGGTGCATGTAACTCCCGCTTGCACAGGGTCCAGGGAAGGGCAGCAAACGTTCAC
GCTCTAAAAATCTCAGAATAGTTATATCATGCAAGTGGCTCCAGTAACATGAAACATTAT
TCGCAGGAATGTAAACTGCACTGAAAAGATGATTCACGTTAAGTATTTACTACTTAAAAA
GATTGGGTCGGTGATCGTGGTATGACACGCCTTCCCCTTTCACTTCCCTAGAAAATATCT
TAACATGTTGTACTCCATATCAATGTACATAGAAGTGTTAAAGTGGAAGGTAGGCATACC
ATACTAACAGCCAGGTAGTTAAAATACAACTCTCAAGCATTCAGAGGATATGCCTACCTT
CCATTTTAACACTCTGAACACAACAAACAGCAGTGAGGCAAAAATGTGAGTCATAATATA
CACATTTAACTACCAAAAATGCTACACCTATGGGCAGGTGTTTACGAAGGCCCACCTACG
TAAGTGATTCCTTCATAATGTCGTACTAATCCCCCCCCCCAATGAATTCCAGCTGTGGGG
CCCATGACATCCAATAAAATCGCACCACGTCGGCTTTTTCCTTAGAAGTCCCGTAGGCTC
TTCGCAGGTGTAGCGTTGCTCTTTAACTACCTATTAATATTCTACCTCGTTTACTATAAA
TCAGACTAAGTAAAAAAAAAATCATCGATCCCATTCCACCAACGAGGTCCCTCACTGGTG
CAACATAAAGCGCAAATGCAGGTCTCAAGCCCCTAATTTACACATTGATGCTTCACCTGG
GAGTTAAACTCGGGAACCAACAGATCATTGCAATGTTCAATACACTATAACAAGCACTTA
GATCTACAATGTCAAACCATCCATTTGCATTGTCACCCACAACGAAGAAATTCAGGACAA
AAATCCACAGTTCGCCTTTCTTGCTGAAAATATAACCGTGGGTTTTTCTCTTGTTCAACA
AAAGTAGTCAAGCACTCAATTAAGGCAGACCCAGGCGCGCAGGAACTATCATGATAAATT
AAAATTACAAAAGTTTTGTACTATATTGCAACGACTAAGCTCAGTCAACCTTGATCGCAT
AGTAAACTCATTGATCGGGCAAATACATGCCTTATTTACTTCCACATTCTACGAAGCCCG
CCTCCTAAGACTATCCACAATGGGAGTAACATAGGTGTCACCTAAGCAAAAAATATGACG
TGGGAACTAATAAATGATAAGAGAGAGAAATTGAGTAACTTAACAAGTTACTCATACTAG
GAGTAACATAGCGGATACCAAGGCAAGATGAGTCTATAGGCTAATAAATGAAAGGCTAAA
TGTTACTATCCACTATGGAGGTAGTAACTTAGACTAGTAACATATGTATATTACTACTCT
ATGTTACTCCCCATTGCGAGTAGTCTGAATTCCCATTCTAAGCATCAATGCAGGTCACAG
TGGACAGAAATCAACGCCCCTAAATACACAATAAACGCGGGAAAAGCGCTGAAAATGCCA
CGTCAGCCCCGCCGCTCTCGCCTGAGAGCAGCACGTAAACGGCGCGACCCACAGCCGCGC
ACGCATAAGTCACATGATCCGCATTGCCCCCCGCAGATCAAACCCCGCAAAACAGAAAGC
AATCACAGCCCGAAGCAACAGCGAGAGCGGGGGGAACGGAAGCGATGGGAGCAGCCGCAG
GGTGGGGAGGCGTGGCGCGGATCTCGAGCCGTGGGTCCTTACCGAAGGCGTGGCAGGCCT
GCAGCACGCGGTCCCGCGGCCACTGCTGGGTGAGGGGCAGCTCGAGCAGCTGCCTCCAGA
ACTCGGAGGAGATCGGGTAGGCCCTGTCGCCGACGAGCGCGGCGAACATCTGCTCCGCGG
CCCCCGGCGACGCGGCGCCCGCCTCGCCCAGCCTCGGCGTCGACGGCGCCGCCCCCATTG