morexGenes - Barley RNA-seq Database

Contig contig_1589115

Source Contig contig_1589115

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1589115 (1655 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1589115

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20309	1	801 bp	MLOC_20309.1	Available	Available	LOC_Os05g38560.1, FRAME:-1, EVALUE:2e-18, 13105.m04047 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative

CDS Structure of MLOC_20309

Contig Sequence (1655 bp)

>contig_1589115 1655 assembly3_WGSMorex_rbca.fasta
TGCAGATGCTCATAGTGAGAGAAGATATAAGCCACGGAAACTTAGAATGCAGGTGTGAAG
ATTCCAACCAAGGTACTCCACCTCCCTTGCTTCTGCCGAAGCTCCTCCTCCTTGGAGGAG
GGGCCAAGGCAGTCTCCCTCTCCCTCCTTCTATATATAGTGGTGGGTTTTGGCCTTTTGG
AGAGACACAATTCATCTCCCACGGCGCAGCCCTNNNNNNNNNNNNNNNNNNNNNCGCAGC
GCTTGGCGAAGCCCTGCCGATGGAATGGTCAAGCACTGTTCTGGGCAAAAACTTTGTGGT
CGATGAGAGTTAATGCGGACAACGAAAGCATCCATACGCGTCGTGTTCGTTCTTGAAGCC
GTCTCGAAAGATCTTTCCCTCAATCACTCTTGGGCAGTATTGGTGTTCTGTTGTGGATGC
GTTTTCCTTCTTTATCTTATTTGTGTTTATGTATGTTGTTGTTTGTCTTAGTTTTCCTTA
GAAAACTATGTCATCTTGTAAAACAAATTAAATCGCTTTTTCTATGTATAAGAAATACAT
ACGCAGGACATCCAACCTCATATGAAAATTTTCTACCTGCACAAAGAAGTGCAATGGAAC
ACGAGGAGAAATGTTACAAAGAACTGGCGGCACTGCTCGTGGTTGACAGTAAAATGGAAG
CAACCCTCTGTGATTGTGGAAAAACATAGCGGTGTCTGAAGCAACGTAGTTGTGGATGTG
TTTTTCTTCGCCGTCGGTCATGGATGCGGCGATGGTTGCTGCAGCTTGGAACATGTCACT
GACAGCCTAAACCTGTGATGGTGGTACAAACGGTACAAAAAGAGAACGTCTTGAGTCCCT
TTTTTTTAGAAGGTCGGCTGTTTATTGATTAAACAAGAATATTACAAATCCGGAGCAGAA
AGAAAAACACACAATTCAGTAGAGTTTGCCGACGGATTTGCCTGAACACCTCCGAGTTGA
GCCAGCAGACGGAAGGGCTGGAGCAAGGACGGCCATCCTACTATGTCTGAAGAAATGGAC
ACTTTCGTCAGTTAACTGGAACAGGGTGCTGACGCCGCCTCCAGCCCTCCGCTGCAACGG
CCCCGGCGCCATCACCGTGTACATGAACTCGCCCACCACGGACTCCCCTCCTCACGCCGC
CATCACCGTGTAAACCGACAGCTGAAAACTGAAATTAAGGAAAATCGAACAGAGAAACAT
CTCTGCAATTTCAGTGTCGCTGTATGTAGAGTTTGACAGACAAAAGTCACAAAACAGAAC
AGAATATGCATAAGGAACCAAACCACGATAAAATCACACTAACAGGATCATAGAGGATCA
TAGCAAGGGAACTCTGTTTACTGAAACGGCAGCGTTAATGGTAAGAACTGGACATGGTAG
AGAATCACGAGACAGATCAAAGAAGCGCCATTACTATTTCACGAGATAATGAAACAGTGT
GTTCTCCACAGAACCACCACAAGTTACAAGACCACGTCCGAACAGCCAACTGTTACACAG
AACCAACGATAGACAGGGAACAGCCTAGCCTAGGAGGAGGTGAACTTGGTGACGGCCTTG
GTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTC
TGGATCTCGCGGGAGGTGACGGTGGGCTTCTTGTT