Contig Data
morexGenes
Links



Map Locations of contig_158907 (6005 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_158907

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_20302 1 1248 bp MLOC_20302.1 Available Available LOC_Os01g51700.3, FRAME:+1, EVALUE:9e-55, 13101.m05397 protein ras-related protein, putative, expressed
MLOC_20303 1 152 bp AK366896 Not available Available None





CDS Structure of MLOC_20302






CDS Structure of MLOC_20303






Contig Sequence (6005 bp)

>contig_158907 6005 assembly3_WGSMorex_rbca.fasta
TCTCCCTTTCTCTCTCCCTCTCCCTCTCCCTCCCTCTGTCCTCCTTCCCTCGACCCCCCC
CCCCCCCCCCCCCACACACACACACAAAAAAAAAACACAGAAAGCAAAAAGTAGTTCTGT
AGATTACCACTTGTATTTAGACTATTTTGGGTCCTCAACTTTGTTCAAAGCTCATTTGTA
GCCCCCTCTCAAATTTAGTTGAAGCTTCTCCACTGCCTTCTGCCTTGAAGATGCGTATGT
CATGGCATTGATGTAAATTCTGGACATGTGAACGGTCACTTCAAGTTGATTAGTGCTTCA
TACACAATATAGACTCATTTTGTTTTGCGTACTGCTAGGGATGTTGATAATTCTGGAGTA
CGAAGCAAGGTCAGTCATATTGCTAAGATCTTATGTTACTTCTCCTAGCACATTATAAAT
ATCTGGATGTGCAATGCACATATTGTTGGAAACATAAATATATTATTTACGGAGTACATT
TGTTGACTACACTGTTGATTGTCGTGGAACTTTTCCAGGTATTTGAATTTTAGGTTAACT
GCTATTTAATTGATTTCTTTGAAGCCCTTCAATTGATTTCTGTATTTTTTGGGTGGGCTA
TTAGGTTAACTGCTTTGTGCTTTTTAATGTCTGGGAATATGGTTAATCATACCAACGGAT
TTGCAATACTATGATTTGTATCTCTTATAGCGCTTGTAGCATCTTGATAAATTTAATTGA
CATGTCTATTTTCCATTCGATTTTAGGCTAGCCCATCAGATCCCAAAACATTCCCATTCA
TCCTACTTGGGAACAAGATTGACGTAGATGGTGGCAAAAGCAGAGTGGTCAGTTGTTGTT
GCAAATATAACGTACAACTGTCCCTAGATACACCACTAACTAATTTTCACACAGGTTTCT
GAGAAAAAAGCTATGGAGTGGTGTTCTTCAAAAGGCAATATTCCTTATTATGAAACTTCT
GCAAAAGAAGACTACAACGTCGATGAAGCATTTTTGTCTGTTGCAAAGCTTGCTCTAGAG
CATGAGCGTGACCAGGACATGTGAGTCAGCTTACTTACATCATTTTTTGTTAGTAATGTT
TTGTTTAACATGGATTAAGTTTATCTTGTGAATACATGATTCATCTCCTTTTTCTTGAAT
ATTCTGTCATCTTAAACTGGAAGTCCATACCCAACCTGCTTTGATAGCTGCATTCTGTTA
TATATCCTCTATGGACGATTTTTATTTAAACAGTTGCTTAGATGTCCTGTCTAAGGCTTC
TGACAATCTTAAGTTTTTAGTATGAATGTGTATAAGCTTCTGTTCATGCTTGTCCATTAC
TTCTATGTTTTTTCAGACGCTAAGACTGTCAATGTGCATCACAGCTCTTAAAGGAAACAC
TGTTTTGTTAATTGATGTGCTGAACCTAAGATTGTTTCTAAGATGACACGTAACGACATA
AAATATGCACCTCTTTGAAATCTAACAATTAGCTTGTGCTTATTATTAATGTGTCTCTAT
CTAGGTTTAACAAAGAAAGAGCAGCTGTTACACCTAGTGATGTTGTATTTTGGTTGCTTA
CAACCTTTTTCTTTTCTGCTGTTCAGCTACTTCCAAACAGTCGCAGATCCTGTCCCCGAG
ACTGAACAGAGAGGCGGGTGTGCATGCTAGCGTTTAGCCGTCTTTGTCCTTCCAGATTTT
GCCTGCTGTGTGTGGTATTCTTTTTAAGTGATGCTCGGCATTCCTTTTGAGTTGACAATG
TACACTAGGGTGCCTATGCATCCACTCCATTCACTTTTGTAACCCATGTAAGATAGTTAG
CAACTATGGCTTCGGTTCACCGAATACTGATGAGCAGCCCGCCCTGTTTCTTGAGTCGGC
AATAAGAGTGCAAAGTGGTACTACTGATACAATTTGGGATATGGCCTAAGCCTCAATTAT
ATTCATGCAGCTGTAACTTATTGATGTCCAAAGCGTTGATTTTGGTTGAGTTGGGCATAA
TTCTTCTATCTGAGCCAAATGTTAATGTTTCGAAATATTTTGCTTGTGAGTTAGCATACC
AGACGTCCATTTCAGTGTTAAGTAATCCAGGATGAAGGGAGTATTTTTTTTAAATTTAAT
GTATATAAACATGTTTGGCGTGTTTGTTCATTCATTTCAGTAAGATGTACTCGTTCATGT
CAAAATATCCAAAACATCTTATATTTATAAACGAAGAGAATATTAAACTAAAGATAATAA
ACAAGTTTCCTGCACAATTGTGAGGGACATGTTGCTAGTTTTCTTCTTGAATTTCTGCTT
CAGCTACCTAATAAACCACTTCGTGATTTCTGTATGCCGATGATTTCAGCTACTCAAAAC
CCTCTACTTGCTCTCATCCACCTTGAGCTGCCCGATGTAGTTTTTCTGTATGCCGATGAT
TAGGGCATCTTCAACGCCGAACCGACTGATCTCGCGGTCCGGCGAGGTCCGGACATATTT
TGCCATCCAACGCGGTCCTGTGTTAGATTCATTCGATGGTTTGGACGCATTTTCCCCCTG
CAAACCGCACACAAACAGTGGGGAGGGGGTGTGGGTTAGACTGCTGCCACGTCCCCGTCT
GACTTAGCTGGCCCACGAAGAAACCTCCTCCCTTGCCTGTGTGATTTCCCGTCCAAAGCC
AGCTGCCTGCATTTATGACGGTTTAGAGTGGACGCAAGAGCGCCGCCTGTTGTGCCACAT
TTTTTCTCCGCGTTGGAACGACATTGGTTTACTCGCCTACTACCATTTAACCAACGAGTG
TGTCAAGGAACCTACTCCGGCGCCCCGAGCGCCACATGTCCGTTCATGTATCGGTTGGCA
TTAAACGCCTCTCTAACTAGCTCCTTGCATCCGTCCTATATAAGTGTGGCCAGGCCAAAC
AAGAACTACACCCCACCTCCGCTCTCTCCATGTACTCCTTGTACAACACCCTCATCGCCT
ATGACGAGCAGAAGAGTTCTCCGACATTGAAGCGACCTAGGTTGCCCGGCGAGCCAGCTT
GATAGAAGTTGGCTTGCCGGCAAACCCTCTAGATCCGGCGCCACCACCATCGACATCGCC
ACCCCTTCCTCGCCCGTCTAGGCTGGCCAATGCCTTCTCTCGGCAAATCCGATGCTAGCA
ATGGCGGCAACGCTTAAGACAGGTGAGGAAAGAAGCCATGTCGGTGAAGGAGGACGGCAT
GTCCGCGACGACCACAAACAATGAGAAAAAGTAGATCATGAGAGGTGACCGCAGCTTGGG
TCCCAAGAAGGCCACCGCTACTGCGTCACCGGGGTACACAACCGGTGTTTTGATTGGTAA
GCGGAGGCGTAGACAACGGCGACCGCCTTCCCCCACCCGAAAATCAACTCTGGTTCGTGC
TTCACGAAGATGAAGGGAGGCTATTTTCCCCCTCTTGCTGAAGCATATCCCTCCAAGGCT
TCCAACACTCCAATGAGGGGGGCTATGGTACATGGGCATGACATGTCATGGGAGGAGAGA
TCCCCGCACCAGCATTAGACTAGGTTTAGCCTAGTCCAGTATAGTAAGTTAAAATATGTA
CAAAATGTAAATATTTTCGTCCGACTTGAATGAAAATCATCTCATTGCATGGAATTTGCT
CGGTTTGTTTAAACTTGTTTTGAAATGTATGTGAATACATTGTATGGTTGACTTTTGTAT
CTGTGTTCGCGGACTGGTCCTCACCTATCCATAAAAGGATGCGGTATCTGATTTATGGGT
GAGCGTTGGATATGCTTGCCGTGTTGGCCTGCAAATTTGCTCCTGCATCCGTCCGTGGAT
AGGGGGATCAGTCCGCGAACACGGATGCGAAAGCCAGCCACCGAACACTTCCCAGGTACA
TTTCAACGACTGTTTAAACAAAACATGAAATTTATGCAAAACGGCTGGTATACATACAAA
CCAAAGCACATACCTTATAGTTTGGACATTTTTATATTTAAAAACATATCCTAAGGCGCC
GTTGATCGTCGATTTTCTTTGTATTCCATATCGACGACCTTGTCCTCATCCGGCGCAGGC
GGCTCTCTCGACCGTCGCACCGCTTTAGTACCAGTGCTAGTGAGAGGTCGTGTCCGCTCT
GGACCGGCGTCAATGCAAAGTGACCGCTCTACAACGATATGAATGCGGACAACTGGAAAA
AGGGGGGAACGTGTCCGAACATGGATGGAGGGTTTTCGATGGGCCATGATAGTTAGGAGC
GGGCATGGCAGCGGTCCGGACAACCACAAAGCCCATCCTTCACTTTGTCTCTGATTTATA
CGAAAAAAACTCACATCTGGACCGGTCAACGGATAGATGCAGAACCGTGTTGGATGGTTT
TCAGGATTTAAACCGCGCGATCGGAATATATATGGACAGTTTGAGAGTCAGTGCCGTTGT
TGATGCCCTTAGCATGTACTATATGGAATGGAAGCATCCCCTAGCCTAAACCTGAGGAGA
CGAGACCTCTGCCTTGCAAAGTCATCCTATTTATTCTAAGAATAACTCCTCCTGCACAAT
ATTCTTGCACCTGTAAATTTTTGATATTCATATACTCATTTCCAGTGTATCGTCACTGCA
CCCACAGATTGTTTCTCTCCAAAACTCGATGGCGAAGCAATCTCTTGCTGGGAAACCATA
GTGCAAGGGCCTTTCCCTGGTCCTCGAAGATATGGTTGACGTCGGTGGTGGTCACAGTCT
CAAAGATGATGTCTCAATGGAATCGCAGGAGCACGAGCTTACATACGCCGTCTTCCCGGA
TCCTGCTGACCTGGTGGCTAGAAGGTTCAGAAACGCTAGCTAGCCAGCTAGTGGATATGG
CTTTTGACTTTTCGATGAGAATCTTCGCCCCCAACCCCATGGACGTTTCCTCACAGGTCA
ACTTTTTTCGCACGTTGCCACCACTCTTCACCCCCCGACTATAATCAGCTGCAATTAAGT
TAAAGCTGAGGAAGTACATCCATTTAAGCGTCAACAAATCTCGGATGGTGGAAGTACTGC
TGAATTGGGGGAAAAAAAATCTTTGCCGAAAGGTACGTACCCGTGTACTAAAGCAGTGTA
GCACAGTAGTAGGAGCGTGCAGTAGATTGGGCTAGATCCGGAGTTTGGACCGAGTGAGGC
CCTTGTGAGGTGCACACGTGCTTGGACCGCGACGGAGACTGACTATTCCGGGACGCCGGC
GAGAGGAACCGGACAGAAATAAAGCTCTCTCTGTTCCTAAATAAAAGACTTTTAAAGCTT
TTAATACAGCGAGTACGAATTACATACAGATGTATAAAGATATATTTTAAAATATATTTA
TTTTATTTCGTATGTAGTTTGTAATGAAATTTTTAGAAACTTATATTTAGGAACAGAGGA
AGTACAAAGGTAGCGGCATGCACTAAATAAACACAAGCGGCATATTGAAAGTTCTTGAGC
TTGTTGGAAAGATTCTACTCCTAGCTACCTGGGGGCAAGACCTAAAAAGAAAAGCTACCC
GGGGCCAGCTTTTTTTTTTGCAGTAGTTTCGGTGCTTGTCCTCTTTAGAGCATCTCTAGT
GGATCTTCTATATGGACATGTATAGTAAATATACATAATCCCAGCTGTTTTTTATTGCCC
AGCGACTCCGAACGACTCGTGTAAACGGGGGTGTAAAATATCCACGTCCAGCCACGACGG
TACGAGGCGTGGAAACAATCACGACCAAGCCACGCTCGTGAACTCGCCTGCCCGAGGCGG
CAACACGCAGCGCCTGGGCGGCGCGCGGCACGTGGGGTGTGCGCGCGCTCGTGGCGGCGC
CGGGGCGGCTGCTGGCGCGGGCGCGGGACGCGTACGTGGGCGGCATGCTCGCGGTGGCGC
GGAAGGCGTCGGCCACGGCGCTGCCCGGCGGCGGGCCCGAGGGCATCTGGGCCAGGCGCG
TGCCGCGGCGGAAGCAGCTGCCGCCGGCCACGGCTCGCGCGTCCGAGTTCGAGCAGCGGC
TGGTCATGGAGATCTACAAGTCCATCGTCGCCTCCAAGGAGCTCACCACCATGCTCCACT
CCTCC