morexGenes - Barley RNA-seq Database

Contig contig_158762
Source Contig contig_158762
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_158762 (7391 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_158762

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_20018	1	713 bp	MLOC_20018.1	Available	Available	None
MLOC_20017	2	1419 bp	MLOC_20017.2	Available	Available	LOC_Os07g29610.1, FRAME:-3, EVALUE:2e-109, 13107.m02976 protein PQ loop repeat domain containing protein, expressed
CDS Structure of MLOC_20018

CDS Structure of MLOC_20017

Contig Sequence (7391 bp)

>contig_158762 7391 assembly3_WGSMorex_rbca.fasta
TTACCCGCATTGTGTTGCGATAACTCGTTCTTCTTTACGGAAAACCCAACGCAGATCACA
GTCATCAATGGATAAAGAGGATGTGGGAGCTCAACAATAAGTATAACTATTTGCTTTATA
CAAACTATGTTCTAATTGCTTTCCACCAGACTATTTGCTTGTACTATTGTGAACTCAGGT
ATTTGCATGTACTGTTATGAACTAAGCTATTTGCTTGTACTGTTATGAACCAATTTATTT
GAAGTATTTGCTATGACCTGTGTTGGATCTAATGTTACATTGTGTGCATGTTGTTGTGGC
AGATGGATATTTCCAAAAAGAAGCAAGAAGATAAAGAATTTGAGGTGACCATGGTTGCAT
TTGTTATGGATGTGGCATCGTCAAGTGTGACACTACCGTATGCACCAAGAAAGTTACATC
TTGTTACATGACTCCAATGGGTAGAAGAGAAATAGAAAGATGCAAAAGCTTTCTATGCTA
TGTTCAGAATGAGGAGGTCAGTGTTTCGCACATTGCATGATCTGCTAGTTCAAAAGTATG
GGCTTGACTCAACTTGCAACATATCATCTAAAGAAGCATTGTCACAATTTTGATGGACCA
TGGGTACATGTCACACCACTGATAATGTTGCAGATCGGTTTGCGCAAAGTGGTTTTGTCA
TTAACAAAAAAATCCATGAGGTTTTGAAGTGTGTAGACCGCATGACTGGCGATTACATTA
GACCAATTGATCCAACTTTCTCTGAACCACACACAGTACTTCAAAAAACAAAGTTTTGGC
CTCATTTTCAACATGCTATTGGAGCCATTGATGGAACACAATTAAGGTGATTGTGCCCAA
GGAGTTGGAGCCCGAACACAGAAATAGGAAAGGTTACAAAAGTGAAAATGTTATGGCAGT
GTGTGCTTTGATATGAGGTTCACTTTTCTTGTTTCCGGATGGCCCGGATCTATTCATGAC
ACACGTGTATGGAACAATGCCATAGTTCGTTATGATCACTTTCCATAAGCCCCGACAGGT
AATCTCTCATGTGTCCATATTGTTATATTCAAGATGGTATGTTTTAAATTTCTAATGTCT
TATGTTGATGTCCTACTGCAGATAAATATTATCTTATCGACTACGGATATCCAACACTTT
TCGAAATCTCAAACTACAATCTTCGAAAAGAACTCGACGATGGACTTAGGAGAATTTTCC
AGAATCTGGATTCTGTAGGATCCTGCGTGAAATTTTTTTGGCTTTATAGGAATTGAGATA
CTACTCACTTTGTATCTAAATAATTGTAGTTGGGGAGAACTAGACTAGTTTTCGCCGACT
ACAATTATTTAGGTGCAGAGGGGGTACATGGCATCTAACTTTTTATGATTTCACTATTCA
AATATGATTTTTCTATTCCTTTGATATTCTTATCCAACCAAATGGGGCCAAGCGTCCCCG
ACTCCTCCCTAGGCGCGACGAGTCGAGATGATAGTCATTCGGCGAGAGGTGGTGCGCTCG
GGGCGTTGGCAGGTGAGATGATAGTTCTGGCCCCCGTGTTGCAATCGCAGGCCGTCGAGC
TGCAACATGCACCCGACGCGTCGTCACTCACATGCTCTGCTCGACAGGAGGCCCGAGCGA
GCAGGAGGAGGAGCTCACGACAGAGAGCTCGGACAAAGCCCTCCAGATGAACCTCCATCA
ACGTCGTGTTCCGTCAGAAAAGCCCTCGGTTGAAGCATTGGGTGGGTCGAGACCGGCGCC
GGCACGCGCTCGCTCTCTCGTACAAGCTTCCGTCCGTCCGTGCATGCATGTTGGGTCGAT
GGCGTCGCGCCATGGCCGCGCGGCCCTCGCCGGTGCACCCGCCGCTGCTCTCTACCTCTC
CCAACGCGTGTTTGTGTTGTGCGACTGCGTGCGTGCGTCATCGGCAATCCTCGCCGTGCC
GCAGCTCCCCGGACGGTTGCATCGCGTACGTGCGCCGACGCAAGCTCCGCTTCAGTCTCC
TGCTCCTGTTGCTTGGCACGCGGCAACTGCTTGCTCCACTCCAGTCTCCTGTTGCTTGGC
ACGCGGCAACTGCTCGACGAAATGCCAGACCAGAGTTGAAAATTGGGATCAAAAGGAAGA
AGATTGCCACCTGGACAATGGCCAGTCAAACGCATGCCAAGTCAGCATCAAAAGCATGCC
AAGTCAGCATCAAAACGATGCCAGGTCAGAACCAAAACTAGTTTTGAAGAAGATTGCCAC
CTGGGCTTCCTCGTCCGCTTGTAGCAGAGGAGGGCGACACGTCGTCGCCGGGGCCGTGCC
TAGCTAAATTATTCCATTGTCTTGAATTTATACTTGGAAAAGAAAATAACAGTACATAGC
CGGGGTGAACGCCAAATTGGGCAGAATTGCTAAAAACAACAAATAATATTCAAACATAAA
AAAATAGATATACACCTTTTCTAGCATCATTAAACAGTTGCACAGAGTAAACTAACCAAG
GTGGCAATTGAAAACTACACAGCCAGTCAGTTTACCCCACTTCCAAAAATTACAAACCAA
GAAATATCCTATTGTTTCATCGTCACTCGAGTCTGCATGAATTTTCTCCCTACTGTTCTT
GTCATGCCCCAAAGCCTGCAGGTAAGTGGCGCATGTTGCTCCAAGAATAGCCCTGGAGCA
AAATTGTAAACCACCAGCAAGAGTTCTCGTGCCCTATTCTTCTTTCTTCGCTTTCTTCGG
CACGGGCTTTTGGTACATCGCTATCTGACTCAAGATCGTACCGTTTGTCACGATGCCGAT
TACAGAGCCCATAAGTACTTTCCAGGAGTCAAGGGATCCAGAGGAGTACAGCAAAGGGAA
AAACAAATATATCAAGCAGACATATCCCAATCATAGTACTTCCTCCGTCTCAAAATAAGT
GTCTTAAGCTTAGTATAAATTTATACTAGAGTTAGTATAAAGTTGAGACGGTTATTTTGG
GACGGAGGGAGTATTATGTATGTGTCACTGAAACTAGTAGCCATATTCTTTTAATAATAA
CCCACCATCTATGCATTCTTCCAAATCAACTTCAAACTAACAGGACTTCAAATGAACGAA
CAAGCAACAAAACTTAATATAGGTTCAATAACAACTTTGGTTGGCCTAGAGCTGGACTAA
TCATGTATAATAAGGGGAAATAGGGCATATTGCTAATAAGGACTATATACGGATGCATAT
AGACGTATTTTAGAGTGTAGATNNNNNCATTTTGCTCCGTATGTAGTTCATATTTGAAAT
CTCTAAAAAGACTTATATTTAGAAACGGAGGGAGTACATACCACTACACCATACAACAGT
TAACTTGTTAAGAAGCAAATCAAAAAACAGCTACATAAAAAAGAGATGCTCATCAGGTGA
AGTAATGAACTATAATCAGACTCAAAGGATACCACTTAACGGAGTCTTCTCCTGGATGCT
GGTAAAAACTCTTACTGCAACAGAAAGGAGCATTAAGAATTAGCCAGCTTTCAACACTCC
ATACAAGGGGAAAGTTTCACATATGAGTACAACTTGATGAACAAAACCAATACTATTTAC
CTAAACTAAAGGTCAAAAGTACTTTGTCAAATAAGAATATGAACTGATTCAAGTCATAAC
CATATTCTTTGCAGTATAATGTATTAAGAAAATTAAAGGTGCTAAATATTGTTTAGTTTT
AGACAATAACATCAGACTGAAAAGGAAATGCAATCCAATAAAATGAAGGCCTGAAAATTT
ATTGCCAACTATTCCAACTTACCAAGGGAACCAGCAAAGTTCATGAAAGAAGTCAGGAAG
CTCAACTCGCCAGTGCTCTTATTCTGCAGAACACCAACAACCATTCTATATTCAAACTCA
ACTCTTAAGATAAAAAAGAAGGTTCTAGAACAGTGCTAGTAAAAGAAGGTTACAGTAAAG
TGCTAGTTAATGGCATATGATGGTCCCCTTATGCATTGATAAAAAAACTTTCTACAATAA
TTGACCAATCATATAGCTAGGTGTAGATGTAACAGAAAATAAAGGCCGTACTGTGAAATT
TTTCCATATTTGCGGCACTCTAGCACAGAAGAAGATGGCATGCTGTGAAGCCTGCAAAAC
GTACAAGTCCCAGAATCAAAATACGAGATCATACGAAACTTTTCAAGTGTACACAAAATA
AAATACCACTTTCTACTTACATAAAGGATTTCAAAAAGACCTGGATCAATTTTTCCAGCC
AAAACAGTCGGAGCTAGTCCACAATATCTAAACAACCATTGCTTAGGAAAAGCAGGTAAA
ATAAATACGAAATCAGCACAGTGTTACTGAAACTGAGTGCTTTGTCAACATTTCCCATTT
GTATTTCCATACTGTTGCTGATGGTACCTAAGAAAAACTATAATAAATTCCTGGACAACA
AGGATACAGCAAAGCTTTCATCCATGTTTTGCTTCCCATTGGTGGCGAGTAATAGTAAAT
GATTCCAATCAAGATAATTGCTGCAAGCAAAACAGATGTAGGTTAAAAAGATCGGTGAAT
AGTTTCTATGCAGCTTTACAAATAGAAAAGAGATTAGTGCTACTTCACCCACTGTTCATT
TATGACATTAGGCCAAAGACAAACCTTGGATCAGCAGAAAAGCTAGCTCTCCATAAGCTG
AAAAGGGCAGTCCTTTGTGAATACAATATGCCAGAGCAATTGTGTAGCCAATGAGCTCCA
GCTCAAAGGAGGCTACACTAAGTCCTCTAACACTTCTATGCTTCAAAATCTTTAGTATCT
GCAACAGAAAAGTTCAGTCAAAGAAGAACATCGAAAAAAGAAGACTGTCTACAGTACACC
AAAGCAAATTCACACAAATGATCAACAGAAAAAGAAATCTTGTGATTGAAATCTTAAAAG
CGCTTATACATACAATTTCCTGAAAAAGCCAGGTCCAGATTCATTCAGTATGAAGACATG
GATGTGATTCTGTAGGATACATTTGTTTCCAACATGTGATCTTAAATCCCAACTCTTATG
AAGACCACAACTCATGTTATCATGTTCACCTTCATGAGAGGATGAAAATTAACTAACGAA
TCATTATATGAGCCTCATAATTCCACAGGCTTCTACGTACTGTAATCCTCATTTTAAGAT
CTCGCACCAACTACATCAGCAGTTCAGCACCATACACTAAATGCTCTAAGAACATCTCAA
TCACTACACATCTCTACATGATACTCAAAAGATAAAACGTTGCTAGATTACTATACTCTG
TGATTATCTGCAATGCTTGGTTGATTAAATAAGCATACAAAAATATGTCAGGCAGTTTAC
TACCAGTCTACAAGCATCCATCTGAAGCGCAACAAAGCCTGCAACCCTTTCTGGTATTGT
CATAATCCATGTGTTGTGTGTGTACAGCAAACTCTCATACTGAACTTGTGCAATACTCAT
AAACTAAAAGTACACTTTGATGATCCCCCCACGAGGCAAGGTTTGGTGGTCGATCTTTGG
AATTGCAAGGGTTGATGACACGAGGTTGGTAAAATAACAAGAATCGTGCCAAACCACAAC
AAAATGGCAAGCAACACCGCAGACATTCCTTCATCTTAATTCATTTCCAAAATTAGGCAC
GGCAACACAACATAAAAGAGCAAGCTACCTGCCAGGGGAAGATGTGAAGAAGTAAACGGC
TCCACGACTCAAACTAGTTTTTAATTTATGACACTAGATACAGGCACCTGAGGGAGCTTG
ATGACAGTAGATCCAGCAATGATGAAGTACCCAAGGGCTGTCGACAAGAATGGTAGCAGG
GAGTCCCTGGAAGGGATCTTAGCACCCAGCGATGCTGACCAGATGTACCCTATGTCCGTG
CCAAAGATTTTCAGTGGTGCCCCACTGGCTGATATCCTTCCGTTGCTCATCTCCAGGTTC
TCCAAAATTCGGAAACCCGGGAGCAATCGGGTCCCTGTTGAAGGCTTCGTCACGCAGCAA
GCCATCAAGGATGAAGGTTCCCTTGAAAGTTTTAGGATGAGAGCTGTGGGGGCTGTAGAG
CATGTTTTTCTGTCAACTGGACAGGGTTGCAATGAACTACTGGTGGTGGGAGAGCAGAGC
ATGTGGCACCCTGGAAACATGCTCGCTAATCAATTTCTAGATTCAAGCAAAGCGGCTGTG
AAGTGAGACCTGAAAATGCCTCAGAGGGTGGAGGATTATGTTTCTCATGGGCTAGAGAGG
ATTTGCAACATCCACAACCTACACACTAACAATCACAAGGATCACACGACCATGGAGCAA
ACAAACAAAGAATTCCACCGGTGGCTTCTCGCTTCGTTGGTTTTATGCACACAATCTAGC
AAAGGGGCATTGCCATGCCGTGCCAAGGATTCAACAAGGCCAGGCGACCAAACAAACAGC
CCTTTATATGTGCAATTTTGCACGCCATGCTCACGTAAAGAACCTGAGATCCTCTCACGC
CCACGGACTCACCCACCCACCCACCACCAGACGAGTTCACATGGCACAATAATCTACTAC
GAGTGACCAATGCTGTAAGTAATGTCGAGAAATCACCAAGTAAGGGCGGGCAATAAAAAG
GCGAGAAGGGAACCGGACCTGCGGGAGCTTGACGGTGGTGGAGGCGGCAACGATGCAGTA
GCCGAGGAGCTTGGAGACGAGCGGGAGCAGGCACTGTTTCTCCGGGATCTTGGCGTCCGC
CAGCGCCGAGAGGACGCAGCCGAAGTTCATGCCCAGGATCTCCAGCTCCATCGTCTCCAG
ATTCGCCGACCACGCCATGCCGATCTCAGCTCCCCAATCTACGGCCAGCAATCACCCAAT
ACAGAAATCAGAAGGGGGAGAATTTAACGAAACAGAGGGTGCTCCGGGCAGGAGGGAGCG
GGGGGGTGAGGGTCGCTGACCTGCTCCGGTCGGCGTCGCGGAGCAGCTCCAGCCGGCGGC
GCGGGAGGGGTCCCGGCTGAAGGTGCGGCGTACCAACGGGGAGGGCAGCGCGGCGACGGA
GGGCCGTCCGGAGGAGCCGCGAGGCACCGGTAACCCTAGGACCGGCGGCGGCGGCGGCGT
CGGCGGCGAGTTGCTCTTTTATTTTATTTTTATGATGACGTGCGCGTGGGGGCTGCCTGT
TGGGCCGCTGGAGTAGGAGGGATACGTTGGCGTCACGCGAGTGGATACCAGAAACTGAAC
GGAACGCTTTCACTTGGGCTGGGGGTGGCGTGGTGGGTAAAAACACCACAACTAATCTAG
TTCGTTTATTGTTATTACAATTAGGCCCTTAAGGCTTCGTTTGGCGCTAGGGGTTTGGGG
AGGAGGGGATTTGGTGAATTCCTTCGTTCCACCCAATCCTCTCAAATCCTCGGGGTTTTG
CTTCCACCGGTCCATCGAGGAGGATCCTGAAACACATGGATAGGAAGGGATTGAAGGGGA
ACGGAGGGGAT