morexGenes - Barley RNA-seq Database

Contig contig_1587524

Source Contig contig_1587524

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1587524 (2892 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_1587524

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19999	1	664 bp	MLOC_19999.1	Available	Available	LOC_Os05g38560.1, FRAME:-1, EVALUE:9e-14, 13105.m04047 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative
MLOC_19998	1	820 bp	None	Available	Available	LOC_Os04g37780.1, FRAME:-3, EVALUE:2e-12, 13104.m03615 protein histone H3.3a, putative, expressed

CDS Structure of MLOC_19999

CDS Structure of MLOC_19998

Contig Sequence (2892 bp)

>contig_1587524 2892 assembly3_WGSMorex_rbca.fasta
GCCGGCGCGGACTTGCGGGCCGCCTTGGTGGCCAGCTGCTTCCGCGGGGCCTTGCCGCCG
GTGGACTTCCTCGCCGTCTGCTTCGTGCGGGCCATTGGGGCGGGAGGATTCGGTTTGGTG
GGCGCGGGGAGAGGATTGCTTGGGAGATTTGGGATTGGAATGAGGAAGAAGGGAGGGATT
CGGGGGTCCTTTTAACAAGAGGAGATGGGAGTGAGTTTTCGAACAAGGGATTGGAATGAG
GAAGAAGGAAGGCAATTTTCCGCGCTTTGTGTTTTCGGCGCTCCGAGTTTCGGGAGCGAA
GGAGATGGGAGTGAGTTTTCGAACGTTGGATCTGCGGGCTGTGGATGGTGTGGATTTGGT
TTAAGGCGAGGCACGCGGATCGTGGGCAGCGATCCGTGGCGTGGGTGTTCCTCGGTTCTG
ACTGGTTGATTGCAACTGCGCTGCGTGGATTTCTTTGTGGAGTTCACACGAGTGGCATGA
TCGAGGATGGGCCGAAAATACAGCGTCACCACCGGACGCCCGGACCAGACGTAGTGAAAC
AAATCATCTTAAAGCATCTACACCACAATCCTTCAAATTCAGCCGCGTAAACGCCGCGCA
TACATCCAAGCGTTCACGGATACTAACCATCAAGTCTCAAAAATACAATCTACATTCAAA
AAAATTATATTATGATCATCAAATACATATTATAAAAGAAATGCAAGAAATAAAACCTAT
GTATTACGTACAACCTAGCTACTCCTTGTCGGAGATGTCGACGATCTCCGTGCCCTTCGA
CGAATAAATGATCGTGTGTTGCATCTCCGCCCGCTCCGACTGCTCCGTTGCGGCCTCCTC
CGCCTCAATCTTTGCGCCCAACTCGTCGAAGAGGGCGTCGGCCTACGTCGGATGAGCCCG
CGGTTGGCCTTCACCTCATCCTCATCCCGGATGGAATCCAGAATGACGTGTCGCTCTGCC
ATCTCCTTCGATTGAGTGATGATGAACTCCACAGCCTCCGTCATGCTCAGGTCGGGCGCT
AGAACCAAGTCGTCCTCGTGCACGGCGGCCACTCAAGCACCATAGCTTGTCGGGCCTCCA
CCCGCGAACTTCACGGGATGGTTTGGTCAGCTAAGTTCAAGCCCGACCTGCCACGCACTA
CGACGGCTCCCTCGACCCTGCATAGTTCCTTCAACTCTACGTCCTGAGCGTCGAAGTGGC
GGACGCCAATTACAAGGTCATGGCGAACTAGCTTCCGACGACGCTCAAGGATGGCGCACG
ATTCTTGCTCCTGAACTTGCCCGAGGACTCAGTCTCTTCGTGAAGCGACTCTGTGAGTTG
TTCCTCGCCAACTTCAGGGGCACGCACGACCGTCCCCTTTACGTCAACAACGTGCAGTGC
GTGAAGCAACGCCGTGATGAGACCCTTCGCCAGTACATCCAGCGGTTCAGCCAGGTGCGT
AACAAGATTACGCTTGCCACGGACGAGGCGATCATCATGGCGTTCACCAATGACGTCAAG
GACCTCAAGATGTGCAAAAACCTCGCTGTCAACGACACCCTGAGCACAGCCATGGAGCTG
TTCAACTTGATCGACAAGTGCGTCAAGGTTGAAGAAGGCCACCTGTTCGCCCACGACAAC
CCTGACGACACGCCCGAGGACGCCAAGGCCAAGGCCAAGGAGATCAAGCGCAAAGGACCC
TCCGTGCTTGAGGCTGAACCCGAGCAGAAGCGCCAAGGTTAAACGATTTCTGAATTGCTG
CAGTATCTGAAGATCAGGATGAGAGGCCGTAGATGAGAAGCACTCACCAGCCAGTCAATC
TTTAGTTCGAGAAGCTGTACATGTGCACTTCCTTTTCCGCGCTGTTACAGAACACATGTA
CGCAGATTCAGGTCGCCGCAGCTATCACAAATCCAACACTTTACATAATACCACCGTGGC
AAGTCACAGAAGTTATCAATCCTTCAACCTAAGTGCAGATAGTTCACCTTTTATGAGTAC
ATGCTACCAGCAGGTCAGAAGATGCAGCCAGAAGACCATAGCTTCCATCATGGATACAGC
AAACGTGCATGCCTCTAGCACATCACCTTGTTTAAGGAACACCTTCCTGCAAGAAATGGA
CAGCTAGTCTAATTTTCAGAGTAACACCATCAATAGGACCAGGACCAAGCTGTTCCAGCC
TAACCAATTGACTGATAGATAAGCAACGCAAACTTACGAAAACTACTATTGAGATAGCAT
ACTATTGGGTCGCTCTTATTACCGATAATCATGGCGGGAAACAAGCCAACCCGATTGGAC
AGCACTGGGTTCCGCACATAATGCACAATATCATGATTCTGGGACCCAAGTTGCTACGAA
AGCACAATCACTTGGCAGACATTAGTAAAAGCACTTATAATACAAAACAAATCGCAGAAG
CAGTCACTAACAATAGTATACTACTACTTACATATAACCATAGTCAACCACTAATAGAAT
GACTCCCCAACAACAACAAAAGACATTAAACTGCAAATGGCCAAACATGGCAGAGTTCAG
TTCAGAAGAGTACCAAACATTAGCATTCTACTAGATGTCAGTTTGCAAAACAAGTACCAA
ACATTAGCATTCTACTAGAGTACCAAACAGTATCTGATAGAAACAAATCGCATATGAGGA
ATGCACATTTGTGTTCCAGATTAGAGCTTCCCAAGAGCATCACTGCATAAATACATCCAA
CAGATTTCATCCATCACGAACACTTTTAGATTCAGACAAACTAGTCAAACACCATGGTAA
CTACAAGCACTGAAAGACACTAGCGATCTAAGAGGAGGTGAACTTGGTGACGGCCTTGGT
GCCCTCGGAGACGGCGTGCTTGGCGAGCTCCCCGGGGAGGACGAGGCGGACGGAGGTCTG
GATCTCCCGGGA