morexGenes - Barley RNA-seq Database

Contig contig_1587448

Source Contig contig_1587448

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1587448 (4363 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_1587448

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19984	1	537 bp	MLOC_19984.1	Available	Available	LOC_Os07g42234.1, FRAME:-2, EVALUE:3e-54, 13107.m04409 protein retrotransposon protein, putative, unclassified
MLOC_19983	2	948 bp	AK370075	Available	Available	None

CDS Structure of MLOC_19984

CDS Structure of MLOC_19983

Contig Sequence (4363 bp)

>contig_1587448 4363 assembly3_WGSMorex_rbca.fasta
ATCCCGGGGCCTCAGCCGTCGGCGGGCGACGCCCCGTTGCCGGCCGGGTTCATCTTCGTG
TGCGACGGCGCGACCACGCCCGAGTGCTTCAGGTACAGGGTGCTGGGCCTGCCGCGGCGG
AAGCTGGGCGCCGTCTCCCGGATCAGGCGCGGCGCGGCGCTCTTCCTCTACGACTTCGAC
GCTAGGTACCTCTACGGGCCCTACCGCGCCGACTCCGACGGCGGGCGCGACCTCGAGCCC
GCCGCCTTCCAAGGCCGCCTACCTGCCCAGGTACCATCCCAGCACCTTTGTTAGGCCCCA
AATCCACTGCTATGATGAATGATACATAAGTGTTTTATTTTGCAAGTCCCTTATCTCCCA
AAGGAATCCTCACAATTTTACTTCTCTGAAATTTCGGTTCATCTTGCCCCATATTATAAT
CTTCAGTTTCCAGTGGCATCCAGCAATCAACCTGGTAGGTTAGCCATACATTGTTATTTC
TCGTAAATTGAATGTTCAGCGTCCTTGTATGTGCAGGTCAAATTTATGATTGATGGCGAT
TTCATGCCTGTCCGAGGGAAAACTATGAGATACACCATAAAAGAGAATTATCCCGGCAAG
TTCTTGCCAGAACTTACCTTTACACAAGTAAGTGCAACCAGTGTTTATTGATGTTTTGTA
CTCCACTTGAGTAGAGGTGAAACGATTTGTGCCTAGTCAATTCTCATCTTGTTGTGCCTA
GTTTGAACTACGGATGGAAGGATATTTTATGGAAAACAGTAATTAGGAGAGCCATGTGCT
TCAGAACTTGCTGCTGTGGTGTAAGCATATGTAGAATCAAGTCGAGATTGAGAGGGATTA
TAATGTACTAATATTTAATTATTTATTGACTATGATTTAACTTCGAGAACTGAAGTTTAT
TTTTCTGATAATGCCTTTTCTTTTTGCATCTCAGCCATTTATTTTGTAGAACTCGAATAT
TCTTTAGCATGACAGCACCCATAGGGTTTCTGATTGTATTAAGCTGTTTGGTTATCAAAC
TGTTTCTTTTTCATGGGAAAATAGCAACATGGTATATATAGAGATGAAAAAAGCGGATGT
AATGCTAACACGTTCTTCTTTCTATCATTTCTTCTATAGAGTTTTTAGGTGGAATTACAG
GTATAGTCATATCAGTGTATTGGCTAGTTGGAATAGACAGGAATAGCACCTTTATCCTCC
ATCTTTCTGTCTGTCTTTAATTTTATCAGTGCTTAGCTGTGAACTACTCCATAAACATTT
ACCTGCACTGAATTTCCATTGTTTTTGGTATTCTGTTGTAGGTTGAGAAACTGAGAGCAT
TGTTCCGTCCAATTACTTCACTGCCAGTGCCAGAGGCACCACCTCTGTATTATGTTGACA
ACAGTCATGCCGCTCCATCTACTGCTTTTCTGCATCCTTCAGCTTCATCTTCATACCCAA
CACAGCCAGCTTCTTATGTGCATCACACAAGCGCCTATGTTCTCACTCCAGCTGCTCATC
TAGTGCCAAATGAAGTGCCTGGGAGGTATGTATGGTTGCCACCAATTGGGCCTAGTACTT
CTCTGTTTCTTAATATCTGCTACATGCAAAGCTATTTTTTGCAATCCAGTTTGTATACAT
AGGTCAATGACGGCCCGTCTCAAAACCGTATTGTTCAGCTAGTCTAGATACTTCTAAAAA
GGAACTACTTGCGGGGACAATGTAGATTGGAAACCACCATTTATTCATGTGTCCTTTTCC
CTTTGCTACACGCACAAGTAATTGATCATGCTTTTTCCTCGAATGTTGTTTCAGAGTTGT
GCCACCACATGAACTGTCCGTGACGAACCCGCAACTTGTCATGCACTATGGGTACGCCGC
AGGCAGCGAGGGTGCAACCGGAGAAACTACACAAGTCCAGTACTGACGGAGCGATCTACT
CCCATGCGGGTGCCTCAGCGATCACTTTATCAAAATCAGTTTCACTTCATCAAATTCACT
TTGGAGCAGTTTCATACAGAAGCTATAACACTATCTTTTTTAAAAAACTCAATGCATTGC
ATTAAACAGTGTGCGAAGCGCATTCGCTCGTCACCAAAGCAGATACACACGGATCACATC
CGTCAGATACAGAGTCAGTCATACCGGCCCTGAGTGTTCCCTTCGCAGCCAAAGCATGCG
CTATTTGATTACACATTCTGGGGCAGTGCTCAATCTTATATCCCATGAACTGACTACGAA
TAAATGTTCTGAGCCGGTCAAAAACCACTCCCAGGTAGGAGAAATTGACACCCTCCTCTT
TAAGTGCCTCTTTCAGTACTAGTGCATCAGTTTTCAACACAACCTTCTGAACACCCAACT
CCGAGGCCAGTCGGAGCCCAACTTCAGCAGTAAGCAGCACCTCAGAGTGCAAGGCACTAT
GAATGTTTGAAAGAAAACCAGCGGCACAAGCAACAACCTCGTCATCATGATTTCGAAGCA
CAGCGCCCCACCCGCCATTCAGGTTTATCGCCTTGAAAGAGCCATCAACATTTATTTTAA
CCCATTCCTCCGCTGGTGGTGCCCAACGCTTCACATGCATCAACGCTTCACAAGTATCAA
AGGTTTGGTGTTTAATAATCCATGCTATCTCCTCACCTTGTCTCCCTTTCCCCCCTCTCT
GTCATTATTGCGCTTGCACCACCAATTCCACATGAGAGTGGCAATAAGAGCTTGCTTCTC
GGTCGTGAGGGCCGTTAATTTGTCCATCATCACCAAGGCCGTCCTCTGGTCCTTGAGCAG
CACTCTCTCCTCTTCCAGTCTTCATTCTCTCTAGAGCCCTTTGACTTGTTTGCATTTGTA
CAGAATGTGGCCCCATCTTCTCCATTCATTTGGCAGACAGGGCACCAAAGGGAAACGTCC
ATGCCTCTTCGAGCCAAGTTTACACAAAAGGCATTAGAGTTGTGGGCCACTCTCCACAAG
AAGTGCTTTATCTTGCCTCGTACTTCAGTTTTCCACAATTTCTTCCATGGGGATAGCATG
TTTGAGGCTTCAGTTGTGGATGCGGCCCCCTTTGGTCCCTCCAGGTTTCCGTTATTTATG
TTGACCCAATATACAGACTTGATCGAGAATTTGTCCTTGGTGTCGAAATGCCACGCGAGA
AGATCCTCGAGCTCCCTGTTGATTGGGATAGCAAGTATCCAGGCCGCATCATCTTCATTA
AACACATCTCGCACAAGAGCCTCGTCCCACATGCCTGTCGCTGGATTGATTAGCTCATGG
ACTTTTGAAAGCAGGTTCATGCCTCTCGGGGTAGCCAACAGACGGGTAATTCCCCTGGGT
ATCCATGGGTCATGCCACATGTTGATCGAGGNNNCATCACCCACCCTCCAAATCAGCCCC
TTTTTCAGAAGGTCAATACCTTTTAAGATGCTTCTCCAAGTATAGGACATATTACTCGTG
GCCGTCGCATTCAAACAATTTCCATTTGGTAAGTATTTAGCCCCAAGTACCTGAGCACAC
AAGGACTCCTGGTTTTGAATCATCTGCCATCCTTGCCTGGCAAGCATTGCCATGTTGAAA
CTGTGTATATCCTGGAAACCTAACCCTCCCTCGGCCTTTTGTTTTGTCAACTTTTCCCAA
CTCAGCCAATGAACTTTATTTGTTTTATCATGTTGACTCCACCAGTACTTGCACACCGTG
GTGCTGATCTGTTCACACACAGTCTTGGTCAAGTCAAAACAAGACATAGTGAAAGTGGGA
ATAGCCTAGGCGACGACTTTGATCAGTAGTTCTTCCCCGCCCGAGACAACAGCTTCTCCT
GCCATCCCTGAATCCTCTGTAGTATTCTCTCAATGATGTGCCTAAATGTCTTCAATTTTG
ACTTTCCCATATGAATTGGCATACCTAGGTATCTCTCATTAAGAGCCTCTTTCGAGATAC
CTAAGGTTCACATCACCTCATCTTTATCCTTCGCTTTCACATTGTTGCTAAGGAAAACTA
CAGACTTGTCCTTATTTATGGTTTGGCTTGAGCTTGCTTCGTACACCCGTAGGATGTGTT
GGATCTGCTCCACACTTTATTTATTTGCTTTGAACAAGATGAGAGAATCATCTGCGAAGA
ACAAATGGGAGATGCTCAGTGCATTGGGGCACACCTTGACCCCCTGGATCAGGTTGTTTT
CTTCAGCTCTGGTCCGAAGGCTAGAGAACGCCTCGGCACACAGCAGGAATTCTCGAGTAT
TAGCAGTTGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCAAAGTAGTGTGATAGCAATGGTATCAACGGTAACAGTAGCAGCAGTGACAGCAG
TAGCGGTAACAGTAGCGGTAGTGACAACAGTAGTGGTAACAGT