morexGenes - Barley RNA-seq Database

Contig contig_158741
Source Contig contig_158741
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_158741 (7198 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_158741

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19975	3	1300 bp	MLOC_19975.2	Available	Available	LOC_Os04g13160.1, FRAME:-3, EVALUE:8e-44, 13104.m01207 protein OsFBD9 - F-box and FBD domain containing protein, expressed
MLOC_19974	1	2353 bp	AK363904	Available	Available	None
CDS Structure of MLOC_19975

CDS Structure of MLOC_19974

Contig Sequence (7198 bp)

>contig_158741 7198 assembly3_WGSMorex_rbca.fasta
GGGGCGGGGGGGGGGAGGCGGAGGTGTGGGGGGGGGGGCGTTCCGTGATCCGCGAGGAGG
AGACCTCGGGGAGCGATGGCGGTGTCGGCGCTTCCGCGGACGATGGAGGCGCTGACGCGG
CGGGCCACCATGTTGCGCGACTCGCTGCACAAGAGCCAGGGGAACACGGACGGCATGGTC
GCCATCCTCGGCTCCTTCGACCACCGCCTCTCCGCGCTCGAGGCCGCCATGCGCCCCACC
CAGGCAGGTCCCGCGTCCCTTCCTCCTTCACATTCGAGCCATCCCCGTCTGATTCGCGCG
GCGATTTCACGTCCACTCCACTGACGTGGTTCGCTTTTCTGGGGGGAAATGCAGGTGAGG
ACGCATGCGATCCGGATGGCGCACGAGAACATCGACAAGACGCTCAAGGCCGGCGAAGCC
ATCCTCTCCCAGTTCGACCTTACCCGTCGGGTACATGAAAATCGACCCACCGCAAAAATT
TCAAACATTTTACCTGGATGTGTGGTGGTAAATTTGTTGCAATCTTTTTTCTTGGAAGAC
GTTTTATGGATCTGGAGGGAATTGAAATGTGCCAAATGAGCGCCTGGTGGTTGCAATGAT
TAAAATTTGTTGCCGTATTTTTAATATGCGTTGTGTGGGGGTATACCATGTTAAATTCAA
TCATCACGGCCATCATGGAAACAAATATGCTTTTCTTTTATTCCTAATTAAGATAATACC
ATTCGTAAATTTTTGTTCTTTGGTTTGGCACTTTTAGGTCATTAATTTGGGTCACTGTTG
ATGATTGTTTCAACTCTTATCAAGAGTTGTCATTTCTTGATCATGTTGTTATGTGAAATT
GACAGTGATATCTCGCAGAAAGAAAAGGAATGTAAATGATTGCTATTTGAGCTCATTGCT
ATTATTATTGTTTGCAAAAGGTTTTGATCTAACTTTGCGTAAACATTGCTTTCGAACTTT
AGGCCGAGGCAACGATATTAAGAGGTCCCCATGAGGATTTGGAGAGCTACTTGGAGGCAG
TGGATATTCTGAAAGGAATCTCCCGCTTCTTTTCCTCGAATAAGAACTTCAGAAGCAGTG
AAGGAATTCTGAATCACGTCAACGGTCTGTTAGCGAAGTCTTCTCTGAAGATCGAAGAAG
AATTTAAGCAGCTGATGAGTACGTACAGGTAAGATAGTCATTCTTATTACAGACTCACGC
CAGAACTACATTCATGTTCATTTCTTATGTCACTAAGAAAATGTTGTTTACGATGATTTA
TCTGTTCTTTCAGCAAACCAATTGAGCCCGATCGTCTCTTTGATTGTCTACCCAAGTCTC
TGCGGCCATCAAAAGACGACACTGAGCCTGGGAACGATAACCAGTCTGACCATCCATCCA
AAGGCTTGGAAACTGCTGTATACAGGACCCCGACACTAGTTCCTCCAAGAATACTGCCAC
TCATGAATGACATAGCTCAGCAGTTGGTTCAGGCTGGAAATCAACAGTCATGCTACAAAA
TTTACAGGTAGGTTTGGATTATGGTTTCCAAATCTATTTCCTTTTTATACTTCCTTTCTT
GATTTCGGTCCAGTGTCTCCTGACTCCTGAGTTACTAACACCTTGTGCAAAGTCAAGTTA
AATTTATCCTCTTTCTTCAGAGAATCCCGTGGTTCAGCACTAGAGTTGAGCCTTCGGAAG
CTGGGAGTAGAAAAACTTAGTAAAGATGACGTGCAAAAGATGCAATGGGAGGCTTTGGAG
GCTAAGATTGGAAACTGGATACACTTTATGCGTATTGCGGTGAGGGCCCTTCTGTGAACA
GGACAATATTGTGTGTGCTAGTTTGGAATTAAACAAAAAATCATCCTAATATATTATGCT
TTTTGAACAGGTTAAACTACTACTAGCTGGAGAAAGAAAAATCTGCGATCAGATTTTTGA
GGGTGTCAACTTTAACAAGGACCAATGTTTTGCAGAAATGGCAACAAATAGCGTTGTGAC
TCTTCTCAGCTTTGGAGATGCTGTTGCCAAAAGCAAAAGGTCTCCTGAAAAGCTGTTTGT
ATTGCTAGACATGTACGAAGTAATGCGTGAACTTCAATCAGAGGTATTCAGGGAGTAATT
TACTGCACCTTCCTTCCCAAATGCTTAATTTCTTCTGCTTGCAGAATTTATTTATGGGGT
TCCATGTCATTGTTGTTTCCTTTTCAACTTATGCTATGATGCTTTTGGTGAGCACTACCA
AATTTCAGCGCCGTCTTTGTTTGAACTTGTTATCAGATTGAGGTGGTTTTCGAAGGAAAG
GCTTGCTCTGAGATGAGAGAGGCTGCATTGGGCTTGACTAAGCGCTTGGCACAAACTGCT
CAAGAAACCTTCGCTGATTTTGAGGAGGCAGTTGAGAAGGATGCTTCAAAGACTATCGTT
CAAGATGGAACTGTCCATCCTCTGACAAGCTATGTGATTAATTATGTTAAATTCCTATTT
GAGTAAGTATTCCCCTCTTCATCTAGTAGTCAATTTATGCATCTGTAGAACAGTAATTTT
GCGAAATCTGAGTAAGATATGCTAACCACGATGAGTTAACTCCGGGGCAATATGTTTATA
TCCTTAAAGAATTATTCTGAACTTCATCTCCACTGAAGAGAAAGTATGCATAAAGCCTGT
CTGCTAGTGGTCTTAGAAACGATTTTCATTCCCAATATCGTAGCAGGCAGTCTGTCGATA
ACTATACAGAGTTGTGAACACGAAAATAGTTTGTGTATTCACTTTCTACTATGTCTTTGG
CTTGCATTTAGTTGTTTTGTATTAGTTTATTCATTTGACAACTAAGAAAAACCTAATTTA
TTGGTAGCCTTCGTGCTACTATTATTCAAATAGCACACTAACAAATGTTATTTTCATATG
AACAGTTATCAGTCGACGCTGAAGCTTCTGTTTCAGGAATTCGAAACTGGTAGTGAGACA
GAATCTCAGCTTGCTGTTGTTACTATGAGGATAATGCAAGCACTACAGAATAACCTAGAT
GGAAAATCGAAACAATATAAGGATCCTGCGTTGACTCACTTATTTCTTATGAACAATGTT
CACTATATGGTTAGATCTGTACGCAGGTATGTTTTTTTTTACTATAGATAATTCATCCTA
GAATAATCTGGCAATCTGCTCACTTAGTGATATCTTGTGCTGCCACAGATCAGAAGCAAA
GGATATACTTGGCGATGACTGGATTCAGAGGCACCGTAGAATTGTGCAGCAAAATGCCAA
TCAGTACAAACGTGTTGCTTGGGCAAAGGTTAGTGGATCATCGAACCCTCCAGTGATTGC
GCACACCACATCCCCTTTCTTTTTGGCTGCATGATGTTACATGTATGGATATCTTTACCT
TACCACGATATAGTCTTTTTAACTCTTTGCTGTTAGTAATTCCATGGCGATTAGCATGGT
AGTTTATGCGAAAGCAATATGGAGAGTTACATGTTTAAGATATCACAGTTTGTTGGCACT
TATGAGAGTATAACTGTCGCGGGCACCGTAACAACTATGTTGACTTCCAAAATCTGGCAT
CCAAGATAATACCGTCCAGGAGGAGTTCGGCTAGGAAAAGAGTCTAGCCAGAACTAGGAT
TACAATTGAGGGAGAATTAGGAGTTGTGACACATTAGGAAGTGTTGTCATATTAGGAAAG
GATAAGGGACCTTACATCTTCTATTAACTTGAGTATGTATGACTCTCTCCAATTCTCTGT
TCTATATCCTCTCTATTCTCTCAACCCTACCCCCATAACTCACCAGTCACCACAGCCCGG
TGCGCTCGAATCGGCCTGCATGTCATGTCTACAAACCTACGAACCAAATCTAGACACATC
AACGTTGTGCTCCACCTGCCTGCATTTTGGTGTCAAGTTCAATGTCCGTGGATTCCTTTT
GTAACTCTAGTACACACGTCGTCTTACAACAACAACAACAACAACAACAACAAAGCCTTT
AGTCATAACTCATGGTTCTGGCACGTGGATAGCTAGCTTCCACGCACCCTTGTCCAATGG
CTTTACTATGGTTGCTACTTGCTAGTATCTATCTTTGCTTGGCAATGTTCTCTTCCATGT
CCTGTGCTTCAGTAATTAACATCATTGTCGTGCTGTATTTACATGATTGGACAATATCAA
TTAACAGTTGAAATACTGCTTCTGTTTTATTTCTTTCAGGTTCTTCAGGCACTTTCCGTA
CAAGGTGCGCCAGGCAGCACTGGTTCGTCAACACCAGCAGACCTTAACAGCAGCGGAGTT
TCAAGAGCTGTGGTCAAAGAACGGTCAGTACCTTGGCAGTTTGGTTTGTTGCTTGGGATA
ATCATGGTAGAAGAATCATTAGTCCTAAGACTACAGGCTTTCGCCATGGCAGGTTTAAAG
CATTCAATACGCAATTTGAAGAACTTCACGCGAAGCAATCTCTATGGATTGTACCTGATC
AAGAATTGCGTGAATCCTTGAGGCTTGCTATAGCTGAGGTTCTGTTGCCAGCCTATCGAT
CTTTCATAAAACGTTTCGGGTATGTCACGCACCAATCACTTTCCATGTTCTCCTATTTAT
TTTTGGTTGTTGTGCTCAACTCCACCCATTAGCTTCCATTGCGTTGATTAGTCGGCTATA
TAACATGATTTCAGTTTCAGAATTACTCCACAAAGGACCATACGATTTACTCTGTTTTGT
CTGTACTCTAAAGCCCCCATCATTTATGGTTAACTGGCGGGGTGGGCCCCAAAACTTTAT
ACTTTGGAGAACAACTTCCTTATCTTCTCCCGGACTCCATCCAACTTAGAATGATCTCAG
CTGTTGTGATATATACTTGATAATAACTGCTGTATTACCAATTTTGCAATTCAGCAATCT
TGTTGGGAGCGGCAAGAATCCGCTGAAGTACATCAGATACAGCCCCGAACTGGTGGACAA
ACTCCTGGGCGAGTTCTTCGAAGGGCAGCAATATGGCGAGCCGAAGCACCAGCATCGCCT
GTAAGGTGTCTGCGGCATCAAGTTCCAACCCCACAGAGATCCCTGTCAAAGCACACAACT
AACGATCCCTTTGCACAGTAGCAGCAATGCTGATCATCATATACTAGCAATATAGTGACC
ACCACAGAAAAGAAAAGGGTTTGCTGTTTCGTAGTCTCAGTGGCTCACATGGCAGGCTAA
CAGTGTAAAGGTGTCGTCCTTCAAACTACCAGCCTTGTTCTATCATAATATATGAGATGC
TGTTCTATCATGTTAACCCTCAGATTTCATTACTTAGAATATATTTCATTGATATAGTAG
ATTTCATTATTTTCACCTGTTACTGAGCACTTGAATCCAATAAAATTGCATGTCTCGCGG
TTGGGGACACCCATCAAGTTTAGACTTATTTGAATACACTGATATGTTGGCTTGGTCCTT
CAGATGTTACCATAGATGGTAACTCAAATACAAATCGCTTCTGATCTACGACTCGGATCT
GAATCCCTAGTTATGTAAACTGAGCATGTATGATGCAAATGATACATAATGCACATAAAA
CATAACAGTAGAGACAAAGACCACATAAGATAGCTGAGTTTTGATGATTATTTAACATTC
CAGACGGGCACAATCAACCAGGGTACATCAAACGGAGCACACATTTCATGGAATATGCCA
AAGGAAATTAGTAAAACATGACAGCTCACGAATGTATCTCTGTCTGCCAGCATTCAGCGA
CACAATCAGCAGAAATAGTGAGTTCTAACATGACCAACGTCAGGCCAAAGCAAAATAAAT
AAACCATACAGAGACTGCATTTGAGCAACACTTGTCTTATGCATCAAATTCTCAAGATCG
TCAGGCAAACAAAAACCAGGAACTCTGACCAAAAAACACAAGCCAACGATCCAAAACGGT
GCTTGCACGGAGACTGCAACATAGCTCACCTGATGAACACAAAAGGTAGAAAACTCAGAA
CACCTTTCCAATCTTCAGCAAACACCCGGCTTCTCCTTAAAAGTTGCAGCCACGAAGAGC
AGCGGTGCGCGTGAACGGGTCCCCTGTAGAGAAATCAGATCCAGCTTTGAAGTTGAGCAA
CCACTTGTCTTCACCTGCTTGAAATACACTCTCCAAGAGCACCAGTGAGCAGTTTTTGCT
GGCCCATTTTGCAGCAAACAGAGGTTTCACCTTGGAGCTGGCCTCAGCCATTGAGGTGAA
GCTTCCCTTGGTAAACACGATCACCAGCTTCGTCAGCGCCCGTGCGCTCTCCAGGACGAA
CTTGAGGAAGGACAGCTCGCCCCGCTCCCCTCGGAAGCCGTAGAAGACCATCAGCTTCAT
ATGTGACTGCACGCATTCGATGGCGCCAACCTGCAATGCACCAAATTCCCATTTTTCTCA
GACAAGTTCACACATTTTACATTGGCGAATTGAACAAAATACAAACTTGAAGTCGTTTTA
TGCACCTTGATGACGGTGTTGCCGATCTCTAGGCTGTGCCGTTCCGGGTCCAGATAGCCA
AGCAAGCTTAGTGCAGGGGCATGGCCAATCTTGACCTTCCTGGGCAAGTCATCGCGGACC
GATGCTGCCCAGATGACGAGCCTCTCGAGGTGCGGGGCGTCTTTCACTGTGATGCTCAGA
TCAATGCTTTCGATGATCTGCACGCACCGGAGGCTGCGGCTGAGGAGGAGCAGGTGTTTC
ACCAGCATGTTCACTTGGATGCATAGGATCTCCAGCACAGGGCTCCTGGTGAGGACGAAG
TCCATGTCCTCCCGCCTCAGGATCCCCACGCAGCAGAGGCCGAGCTCGCGGAGGTGTGGG
AATGACGCGGCGCGCGGGAGGGTCCTCGTGTCAGGAAACTCGAAGACGCCAAGGTACAGG
CGGGTGAGCGTTGCAATGGCGAAGAAGGTGGGAGGGATGGGCATGTTGAGCGGCCACGGG
CGGTTGACGAGGACGAGTTCCCCCGAACAGCAAACGCGTTTTGCGGGCCGGCCGGATGCG
GGGTCTGCTAGAGTTGCTCTAATAGGCTCCGTATAATCGTCGGAACTGTAAAATTCCGGT
GACTATACGGGTTTGGGTTATTTTTTGTGCCAGACCAGATACTTAAACTTTTGCGGTGGC
CCGTAAACGCGACAACTCGAACGCTATATCTGCGGGTTGGACTGCTGGATGCGGGTCGAA
ACCCTATCTCCCCGTCGCCGCAAAAAGCCCCCACCTCACCGCCGGCGCCTCAGACCCG