Contig Data
morexGenes
Links



Map Locations of contig_158734 (6767 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_158734

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_19955 2 2229 bp MLOC_19955.1 Available Available LOC_Os07g40750.1, FRAME:+3, EVALUE:0.0, 13107.m04239 protein PPR repeat domain containing protein, putative, expressed
MLOC_19956 4 1883 bp AK362023 Available Available None
MLOC_19957 1 238 bp MLOC_19957.1 Available Available None
MLOC_19958 1 238 bp None Available Available None





CDS Structure of MLOC_19955






CDS Structure of MLOC_19956






CDS Structure of MLOC_19957






CDS Structure of MLOC_19958






Contig Sequence (6767 bp)

>contig_158734 6767 assembly3_WGSMorex_rbca.fasta
CCTTTTAGGGATTTCACTAGAAGACTACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT
TAGGAACGGAGGGAGTATATTGGGACGTCATGTTTTAGTATTTTCTCAATATAGAGACAC
TCCATGATTCATAAAAATTAAAAATATTCTTATGCTATCTACTCAAGTTGACATTTGAAA
GAAGAAGCACGAGGTTTTTTAGTAAAAAAAATATATAAAACCCCTCCTATTGATGCTCAA
GCAAGCAAACTTTCCTTAAACCCAAGTAGCCAAAAGGAAAGAGGAAAAAAAATACCACGC
CATGGCCTCCTCTTCCCTCTTCGCCGCCAGGCGCCGCCTTCTCCACTTCGGGCGCGGCAG
GCTCCTCCAAGGCCGAGTCCGTCCCCAGAATCCCACTCCCCTGCTCCTCCCTGTGCGCGC
CGCGTCCTCTCCTCACTCCAACAGCGCCGAGAGGCCGCCGCGGCGACCCCCGGGCCTGCA
GTCCACTCTGTGGCCGCTGGGACACCCGGACACGCTTCTGGTGCCGGAGATCGAGCGCTG
GGCGGACAAGCCCGGCAACCGCCTCCGCCCCGTTGAGCTCGAGCGCATCGTCAAAGAGCT
CCGCAAGCGCCGCCGCCACCGCCAGGCCCTCGAGGTACTGCCGTACCCTCCCCGTGCCCC
ACTGACTGTCCGTCGGCTGTTCGATGAAATGCGGCAGTAGCTTCCCATGGTTCTGTTAGC
CCGTTTATCTCTTGCAGCGGAATGCGGGAAATTCCCTGCCATTGACAGATACGAGTAGGA
CGTTTCTGAAATGGTGACTTGATCTGTTTCTCATTTTTACCATGCTGTATAATCACGTGG
TTATTTGCATTGGACTTCTCAAAGAGGAAACAAAATGAGGCTCAAGTTCATGTGGAGATT
CCTGTGGAACTGGGTGCATCAAATGTATTACGTAGGATTTTGGCAATCCAATCCTAAGAA
CCAAAATACCTATGCAAATCCTACAATCCAAAGAGGCGTAGTAAGAACTGCAAGGAAGAA
TTCCTTTCGAGTCATTGCTTAGACGTTATGACTTTGCGTGACTAGATTATCCGAGTACGG
AACAGTAGCACATGGTGCATAAAGAAGAGAATGTTGCGTTCAATTTATTTTTGTTTGCCT
TATGTCACAGACTTGAAGTTTAGTGGAATGAGGAGTTTAATCTGGTATGTGTTTTATTTT
TAACTCAGTGTGGTCTGTAGTTGTAATACTTCCGTGCGGGTTAAACTGCATCTGCATTCA
TGTTTAGAATTAACGACTGACTATGGCAACCAGGGGTTTGCAGCATGTAAACCATTAAAC
CCTTGAAGTACGTATAAAATAATAATAATCCATCCCTATAGTTTGTCACTAGTAATTATG
CGGTATTTTACATACCCTTGAAATGCCTCATCAGTTTCTTTCCAAACCTTTACTTTGTAC
AGGTCTCCGAGTGGATGAGTGCTAAGGGTCATGTCCGATTTTTGCCAAAGGATTATGCTG
TTCACCTGGATTTGATCGGTCAAGTTCATGGTATCGGAGCAGCAGAAGCCTACTTCAATA
CACTGCCTGATAAAGATAAGACGGAGAAACCCTACGGTGCGCTCCTGAACTGCTACACAC
GAGAACTCATGGTTGATGGATCCTTGGCTCATTTTCAGAAGATGAAAGAGCTGGGCTTTG
TTTTCTCCAGTCTCCCCTACAACAACCTCATGGGCCTCTATACTAACATAGGACAGCATG
AGAAGGTCCCTTCAGTGATAGCAGAGATGAAAAGCAGTGGTATCATGCCTGACAACTTCA
GCTACAGAATATGCATAAACTCTTACGGCACACGGGCAGATTTTTTCGGGATGGAGAACA
CCCTGGAAGATATGGAGTGTGAGCCTCAAATTGTTGTCGATTGGAATACCTATGCCGTTG
TGGCGAGCAACTACATTAAGGGCAACCTAAGAGAGAAGGCAATCTCTGCCTTGAAGAAAG
CAGAAGCAAAAATTGACATAAAAGATTCAGATACCTACAACCACCTGATCTCCCTCTACG
GCCAGCTGGGGGACAAGTCAGAGATGAGGAGGCTGTGGGGGCTCCAAATGTCAAACTGCA
AGAGGCATATTAATAAGGACTACACTACAATGCTTGCAATGCTTGTGAGGCTTGATGAAA
TTGAAGAAGCCGAGGCCTTGTTGAAAGAGTGGGAGTCGAGCGAAAACGCATTCGACTTCC
ACGTCCCGAATGTCTTGCTCACTGGATACCGGCACAAGGACATGCTGGACAAGGCCGAAG
CACTGCTGGATGACTTCTTGAAGAAGGGGAAGATGCCTCCTTCGACCAGTTGGGCCATCG
TGGCAATCGGCTACGCGGAGAAAGGTGATTGTGCGAAAGCTTATGAGTTGATTAAAAATG
CCCTTTGTGTTTATGTTCCAAGGAGTGGCTGGATCCCGAGGCCTGCGATGATTGAGATGA
TACTCAAGTATCTTGGAGACGAAGGTGATCTCAAGGATGTTGAAACTTTCGTCCAACTGC
TGCAAGCTGCTATGCCTATGAACTCACATATGACTGACGCTTTGTCAAGGGCTCGTATGA
GAGAAGAAAAGAAGTCTGGAGACGCAGAGAAGGAAGCTCTAAGCTCAACAAAGGCATCAG
GATAATTTTTGCTGCAACTCTCAGTGCCAACTTATTGCACCATGTAATTTATCTAATTAG
TTACCGGAATTCATTTGATATTTTACTTGAGTCTGAAACTTGCCATAAACAAATTGCTGC
CCGGTTCTCCGCAGGTTTGTAGCATAGAGCACCCGCATGAACAGCAATTTCTGATAAAAT
TGTAAAAAAGTTGATTTTTTTTTGTGGACAAACATCAACAAGTTTTCTAACATCCTGCAA
AATTTCGCCGCAAGAAGGCATCCATATTGGTCTGGGCCAAAAATAACAGAAGTGAGTACT
CCAAATATGTCTTTTGGAGTCCCGAATTTTTATTTTATTTTTGTGTACAGGCCTCCACGG
ATGTCTTTTCTAGGTGAAATTTTACAGGATGTCTTTTCTAAGTTGATGTTCAACCACATT
TTTTATTGTTTTCTGATTTAACTCTTCATGCGGGAAAATCTATGTCACATATATTGGCAT
GAAAGTGCAATTGTGCAACAATACATGTTGAGAAGACAATCAAACGGTATTTAAAGGGAA
GAGGGTCAGCATGGCATATCTGCGGCATCTTTCTATTTTGCATCTCCAACTTAAAGTATA
CCATAATAATGAATGAAAAGTTTCGAACAAAACCAACCATCGCCTGGAGAACAATGACAC
ATTCCCAACCAACCATGACATTATATTAGTAGGGGCATACACAAAGACTTCATAAACGTT
ACGAATCATACGTCTTTGAACTGTGAAATGATGGCTAATACTTATGTTCTACATCATCCA
GCCTGAACCAAGGCAGCAAAAATGAAGGGGTAATACAAGACTAACAGGTCACTTAAGAGG
TCTTATAAGTTATTTCTCCTGCAGCTGTCACAGTTCAAGCAAACGTAGCACTAGGATATC
CAAGTTTAAAACATGGATCTATGAAATACATTGGCATAACAATGCCATCAATAGAGCAAT
TCGATATAGGACAGATGCTCGAAACACCATAAGACACCATATAGCACCGACATATGCTAT
GCTACTCCGAAAGAGTGGCCTTCAGCTCTCCACTCTTTTCCAGCTCGAGAACAATGTCAC
AGCCCCCCATCAGTTCTGATTTGTAGTAGAGTTGGGGGAAGGTGGGCCAGTTCGAGTATG
TCTTCAGACCTTGTCTAACTTCCTCATCAGATAGAATGTCAAAGGACCCAAAGCTTATCC
CTGCTCCTTTCAAGGCATTCACCACTTTCGAACTAAAGCCACAACGTGGATTATCTGGGT
TGCCCTTCATGAACAGCATCACTGGGGATGAGGAAATTAGAGCCTCGAGTCGGCCATCTA
GGCTCTCTTCCGGAATAATCCCTTTCTCAGTCAGAACCTTCTTCAGTTCCCCACTCTTAT
GCATCTCCATCACTATGTCCGAACCACCAACCAATTCACCCTTGATGTACACCTGAGGGT
AACTAGGCCAGTTTGATAGAACCTTTAGGCCCTGCCTAACCTCATCATCTGTAAGAATGT
CAAAACTTGAGAAAGGAATCTTCTCTTGCTTAAGAATGTGAACGACCTTTCCACTGAATC
CGCACTTGGGCTCCTCGGGTGAACCTTTGATAAATATCATCACTGGGTTAGAGTTAGTGA
GACTCTCCAAACGAGCTTTCTGAGCTTCAGTAAGCCCAATTGCCTCAGGACTCTGTTCAT
TTGCAGATTCAGATATCACCGGCTCCTCAATTTTGGTTCCTTGTTGCCCGAGAGGAATGT
TATGCTCCTTTAACATATCCTTCAGTTCACCACTTTCATGCATGGCAATAACAATATCAC
ATCCACCAAGCAGCTCACCTTTGCAGTACAACTGAGGAAAAGTTGGCCAGTTAGAGAACT
TCTTCAGCCCTTCACGTACTTCATTATCTGAAAGGATGTCAAAGCTCCCAAATTCAACAC
CTTCCTGCTTCAAAATGTCAACCACCCTTCGGCTGAACCCACACCTTGGTTCTCCTGGAT
TTCCCTTCATAAATAAGATGACAGGATGGGAATTGACAAGCTGCTCCAAACGCTTCTTCA
GTGTACTTTCAGCAGCAGAAGATCCATTTTGCCGTGCCATTTCTTGGACTTTTTCGAGTA
CAGCAGGCCCGGCAGCCACCCCCAAGCTAGCAGGTACAGCAGACTGAGCAACATTGGCAG
GCCCAGCTAACTTTGCAACCTTATTGGCCAGGCTGGCTGGGTTTGCGCCCTCCAAGGTAT
CAACAGGTTTGCCTTCCTGAAAAGAGATAAACCATGCACCGATGACAACCTCTTACAAAG
AAGGCAATATAGGAAACTTCCAAGGAAATCGATAAATACATTTGGCACAGCAATGAAGAA
AATCTGGAAGCTAAGCAAATATGACCTCAGATATGTGCGCAGAGCAAACACCATATGAAA
ATGTCAAAGGATGTGTGACACATAGGTTGGAATTACAAAGGAGTCTCACGATAACACCAA
AATGCCAAGTGAAGGCATGACCAAACTAGCCTAGCAAAAAGGACATTGTGCATGCCGACC
TCATGAGGTCCATCACAATATCATTAGGTTGGTTCTAGTCATACAGAACATTTCATTGTC
CATACAACACTCCAATGACCAGAACTTGTAAGAGCCTGGATGGTACATCATCTCCCAACA
AAATTTACCAAAAGAAGCAAGAACATCAAACGTACATGCTAGGATGAACCAATTAACATA
TACACTCATGCAGAATCTTTAGGGTAGGTGGGCTAGAGTAAATTCAGTGAAGTGTGTATC
TAATTTCATTATTCCACAGTATATGAGGCATGGGCTCACATGATTTATGTCATTGCTTGT
AGAATACTTCATGCTTAAGAAGTTTGAAAGTGGGTCCTAACAATAATATCAACACATGCC
TCATCATTAGGGCAGAGCAGATGCTTGATTTTTTGCCTTTAAAAATGGACAAGAGAACTC
ATGCAATTCAGCTTTAATAATAAGGAAGAAGGGTGCCATGAGTCCATGACCCTACCAGGA
TCCATTATGAAGTGTAATCAAAAAGAGGTCCACTAGCATGAACTAATTGCATTGCATGAC
AACTGTAAACAGTAAATACCTTGCAGAAAACAAAGTATGGCACTGCTGTAACTCCATATG
CCTCTGAAATTTCCGGTTGTTCTTCAGCTTCAACCTGACAGAAGTTACCAACATGACGAG
GATAAATAAGAAAAGGCTTGAGATATCCAAATTACGAAATGGTGTGTCATTGGCAGAGCA
TAAAGAATGAATCATAATTATGTGACCAAAGAACACTTCATAATAATCAAAGGACAATAG
TCCCAAAAGAGGAATGTTTGATTAGATCATTCTTTTACTAGAGTTGGTTTCGAGATCTTA
TGGGTTTCGACTCTGCCCGCCCAACTTGTTTGGGAATAAAAAGGCTTTGTTTTTGTTATT
GTTGTTGATTCTTTTACTTGAATCCCGGTCTGATGGCATCACACGGTGAAAGTAGTAGAC
AACAGACCACTATAGCAAAAAATATCTTACAAAAGACTTGATACAGGTACTGCCTGATTT
CATACTTGTAACTAGAACAAACGAAGGGTTTCGGTTTCAAGCACACAAACGGGTTGAATT
CTGCTTTTATCTCATGGTTCGAGTTAATCAACTGCATACACATCACATAGTGTTTCTCGC
ATCGTAAGTAAATAAATACTCTACTCCCTCCGTTCCTAAATATTTGTCTTGGATGTATAT
AGACATAATTTAGTGTAAGTTCATTCATTTTGCTCCGTACGTAGTCCGTAGTTGAATCTT
TAAAAAGACAAGTATGTAGTCCGTAGTTGAATCTTTAAAAAGACAAATATTTAGGAACGG
AGGGAGTATAAGCATGCGAAAAAAAGTAACCTAGGCAGCAGCATGAATCACGCGCCAGAA
CCCTAAACGCAAATCTGTGACCAGAGGCCCAGACCGCCGCCGAAGGATCACGATCCACCG
GAAACCGGCCCGAACCCAAATCTACCGCGACCACAGGGGAGGAATCGGCGAGCAGCAGCA
GCAGGCTGCGCGCGAGCGCGTGCGTGCGTACCCTGAGGAAGAGCGCG