Map Locations of contig_158665 (3551 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_158665

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_19825 2 2789 bp MLOC_19825.2 Available Available LOC_Os01g41310.1, FRAME:-2, EVALUE:4e-103, 13101.m04235 protein OsFBX18 - F-box domain containing protein, expressed





CDS Structure of MLOC_19825






Contig Sequence (3551 bp)

>contig_158665 3551 assembly3_WGSMorex_rbca.fasta
AAATGAGTGAATCTACACTCTAAAGGATGTCTATATACATCCGTATGTAGTCCACTAATG
AAATCTCTTTAAAGANNNATATTTAGGAACGGAGGGAGTAAGTAGCATGTAGCCTGTTGC
AGTTGCACATACCCACAGTTTAGAGTATGATTGTTGCATTGTTTCAAACAATGAAGTAGC
AAAGCTAAAAGGGCGTCAGAGACCATGCTAAATCCAAATCAAGCTGTAAGTAGCATGTTG
CAATCAGTAGCATGCGGTTTCATATGCAAAGAAACGGATGAAACAGATATAGACAGCAAG
CAAATACAGTATATTTTTTTAAGTCGACAGTAAGCAAATAGCATACCAATGTACTCGGAA
AATATGCACCCTAATAGTGTGAGTGATCTTGCAGCATTGTCGTTTTACTGTAATTACATA
GCGTTCAACTGGTTCACCATACACTCATGGTAGTACAATGTAAAACAATGCTAACATGCC
AGTAACAATGCAAGTTCGTTTATGTGATTATGAAGTATCAAAGATAAGAATAGATGTGCT
CCATACAGCAGCGGATTATGACATTAAATCGTAACATATGCATTGCTAGCCAACGTTTGA
AACACCACAAAAAACTTAATCAGTTGCAAAACTAACCAACAATCATGGGGCAAATAAACT
GGAAAGTAGACTTCATGAATTTTGTCACAGACTGCATGAGCAAAATAGCTTGGACATCTA
ACCTTACACCTCCAGTACAAGCTTCTTTCAAAATGCTCTCCCCTAAAATGGACAAAAAGA
TCATAAATCATTTTCATGCTTTATAAATGGTAACACCCCTTGGGAATAGAAAAACATAAC
CAGTTTTTGAGTGTCAAGAATGTCAACTTTGTCAGACATTTATGTTCCTCCTTAGAGCTG
GCAAGGCTATTAGTCCATTGAAGTAACTAAATAATGAACGGCGAATGAAATCAAATGTTG
GGCTATTGGCAGAATTAAACCAAGAGAGAACATCATGCAGGGCAAGCAACAACCATCCTG
GAAGATAGCACAGAGAAGAAAGTCCTCTTTGCAAACAGGAAATGCAGAGCCAAACAAGTA
CAGTAACACCTATGTAACTGTTATATGTCCAAACATATATAGTGGGCATTCCATTAAGCA
AAGAATTGGCATATTTGAGCATTCTCACTTCCTGAAAATGTTTGTGTGAAACATGAATAG
AGTAAGCAACAGCTTTGTTTTCGGAAACCAAGTTCACTAAGATTGTTCACAAACCAGGTC
TCATATGTAAGCTCTAGCTTTGCTCAACTAATCAACTAAGTCTTTATTCGAAAGAAAAAT
ATCAACTGTCATAAGCTATTTATTCCATATGCTTTTACCAGTCGATGCAATGTGCCATTT
TTATTTCAGATACACAAAACATGATGCACAAAGCAGAGGTGCAGAAGTACATGTAGCATT
TGCCATCCTGATCCTGGCCAACCAAGCTTAGTATACTCTGACCATCAAATGATAGTTAAT
GAAACTGACAGAGGTGACATTCTACATAACCAATGCTAACAAAATGAAACCAGACATGCT
AAAAAACAGGTGCACTATATCGAGAAGCACATTACTGTCATAGGGTCATATCGAGACAGA
TACATGACAACAACACTAGTCTGTCAAGTACTTCTGCTTGCTTTAATTCCTACATATTCT
TGGTAGTTGGAAAACTCAGCCATATCTCAAGATAAGGCATGCCTACAAGAAACTAAACAG
CAAGATCTTGCAGAGAACAATCATTGATTCCTCAAAAAGTATGGATCAACCATGTAAACA
TACAGAGAACTAACCATGGATTCAGCACTCAAAAGGGTCATCGATTGTAAGATTGGATGC
TTTCTCCAAGCGCAAACCAGTGCCTGCTTTAGGTGACACCTGTAGCACTGCAGAGATGCC
TGTTGGAAACTGTAGAGACTGAAATTCGTCTTTTATCTCATTCACCTTGTCAGCTGAAGA
CAAAATTCCTTCGTGCGGCACAAGCAGTAAGGACTGCAGCTCATCGGCATTCATGGAAAC
GAACTTGAGGAACTGAAATTCATTTTGACCCCCTCGGAAATCAAGAATAACCATCTTCTT
GATATGTGATCTCAAGCAACAAATCGGACTGATCTTCTGCCAGAACTTGGCATGATGCTC
CCCACTGGGTTCATCGGCAGTTACAGATGGATCATGCAGTGCAGACTGCAAATTGGTACC
AATGTGTGAGCGATTTGGTTAAATATACATATCAAGCTGCTAATAATTGATGATAATATT
GAAATGATCGACGGGCTGAAGGAACTGAGAGTTACCTCAATGTGCAGCGTGTCAACATTG
GGAAAGCATCTGAGGAAGCTGGCCAGCATCTTGACCTCCCCAAAGACACTAAAATTCACA
GTTAACGCCAATATCTTGACGCTTGGAACCACAGTGCTTGCGCTCACCATTGTGTCTGAC
TGCAAAGAGGTCCACAAAGACAGGTTTATTATAAGTCATCAAGTGTTGTATAATCATACA
GAACATTATCATGGGATGGATCGATGTGGATAGGATAACTTTGAGAGACTGCAATGGGAT
GCAGCAAAAGCAACATTATCATAACTCATTCACAACTTTCTTATCGTAGAGAACATGATG
GATGGAACAGTTTCATGTTGAGAGAGAGAGATTGAGAGTGCAGAGACGTACCCCGATGAC
GCTGTCACCAATCTGCAGCTTGTGAGCTCTTGTGTCCAGGTAGCCGAGCACCCGCAGGTT
GGGAGCACAAGTGATCCTGAGCTCCACCACACCATTAGGCGGCAGGAACAAGTAGAGCCG
CTGCAGGAGCGGCGTGTCCACCACGGTGAACTCCTCCACCCTGGATATCCCAACGAGCGC
GCACAGGAGGCTTTGGCTGCGGACACGGACGTGCTTGGGGCTATTGAGGGTGAGCCGAAG
GGACTCCAGAACGGGGCTGGCAGCGATCAAGGACTCCAGTTCCTGGTCGCTTATGTCAAT
CCTTACCATGGCGAGAGTCCGCAGATAGGGAAGAAGGACCTCGGCGCCGCTGGGGAACGT
CCAGAAGTCCAGCGTGAGCTCCTGGAGCGATTCGCAGCGGAGGATGTCGGCGGGAAGGGG
GCGCGCGAGGTTGGGCTGGTCCATTAGCCATCTGTAGGCGAGAACGAGTTTCTCCGTGCG
CTTGTCGGCGAGGAGGCGCGGCCAGTCGGGGAGCCCACGGTCCAGTGAGGCGAGCCTGCA
GTCGAAGAGGAAGACGGCGCGGAAGTGGCCCGGGTGGTCGGCGAGGACTCGGGGGATTGC
GGCGTCGCGCGCGCGCTCGGGGATGTCGGCATCCTTGAGGACGAGCGGGTAGGAGCGCCA
GAGGTGGCGCCAGGCGCGGCCGAGGGTGGCGGCGCGGGCGGCTTCCGTGATGGGGAGGTA
GGTGATGATGTGACGGAGCAGGTCGCTGGGGAGGGCGCTGAGGCGGGACCCGCCGCCGCC
GCGGCCGGCGCCGGCGGGCGGGGGGGGGGGGGCGGGGGGGGGGTTGGGTGGGGGGGGTGT
TAATTGTGTCG