Contig Data
morexGenes
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Map Locations of contig_158658 (6146 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_158658

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_19811 1 694 bp None Available Available None
MLOC_19810 1 3018 bp None Available Available LOC_Os05g39810.1, FRAME:-3, EVALUE:6e-134, 13105.m04199 protein retrotransposon protein, putative, unclassified
MLOC_19809 1 1331 bp None Available Available None





CDS Structure of MLOC_19811






CDS Structure of MLOC_19810






CDS Structure of MLOC_19809






Contig Sequence (6146 bp)

>contig_158658 6146 assembly3_WGSMorex_rbca.fasta
TTGTTGTACTGAACGATAAACTATTTATTTGAGTTGTAATAACTATTTATTGTTGATTTA
TTTTGTTTGTTTGATCATTTTTCTCCTATTTTTTGAAATGCATATGTGGTTTGTGCGTGC
TGCGCGCGCTGCATTTTTTGGCATGCTGGAGCGGGGCGCGCGCGCTGCATTATAGCGCGG
CTGTTGGAGTCTGCGTCTATCCCCGCGCTAAACCAGCCGAAGCGCGTGCGGTAAATACAT
TTTATAGCGCGGCTGTTGGAGCCTGCGCCTATCTCCGCGCTAAACCAGCCGAAGCGCGCA
CGATAAATACATTTTTTGGGCGCGGCGCGAAGCGCGGCTGTTGAAGATGCTCTGATAATA
GATTGATAGTGGAACCCAATCCAATATGGAAAATGTTTGCTTTCTACCGGTTGATTTTCA
CATCGCGTAAACCGTCTGGAGCTTGCGACACGTGTTCAGGCCCACCCACCCCTTGCGACC
AGTCCGACCCAGCCTTATCTCTTCGCCTCCGCATGTTCTCCCCCACTCTTTTTCCTCCTT
TTCCCCTTTCCTGTCACACGCGAGAGAATGAACCAGAGGCTAGCACACCGCCGCACGAAG
GAGGAGGCCGGAGGCTGGCGCCGTTCGTCGCCGGTGCTGCAACACAACACGGGCAGGCCG
GAATAGGGCACCGCTCATCACCGGAGGAAGCTCCGTCCCCGTGGATCACGCAACGACGAC
GGAGATGCAGTGAGGCACCCTGTGGAGTTCGTTGGCGGCGGTGCAACAATGGCGCTCTTG
CCGGCTGCACCTGGTGTTGCGTTGCAGCGCTCTCCGACGTCCGTTGAAGCTGCAATGCAA
CGCTCGATACTCCAATGGAGCTCGACGGCGCTCTCAGTGCAGCACAAAAGGTGCGCGACC
TCGTCAAGATCGCCGACTGCGGTGCTGCAAAATGGAGCTCTCGCTGGTGGCTCCCGATGA
TGCATTGTCGTCGACGGTTGTCTAAGCTGCAGCGCTCGGTGCTTCAATGGATCTCGGCGC
TCTCGAAGCTGCAGTGTTGTGCTTGGTGCTTCGGTGGAGCTCTCGATGTGGCTCCCGATC
TCGTCGACGGGCTCAAAGTTGTAATGCAGCAGCTCGGTGCTCCAATGGAGCTCTCGTCAA
CGGCACTTGGTGCTATGTTGGAGCGCTCGTCGGCGGCTCTCAGAGGTGCGATGCACCGGC
CAACGGCGACTCCAGTGTTGCAACGCTGTGCTTTGTTGGCGACAACCATGATACTTTTGC
AGCGACGGCCTAGATGAGGAAAGCAAAGGTGGCTGATGCAGTACAGGGAGAAGGATGGTG
TGTCTGCGTTGACTTTCTTTTATGGGCTGACATAAAATGGATCAGACGGCTGATTTCTTC
AGTAAATCAACCGGTTGATTTGTAGCAGCACCATCCAATATGGATTGTATAGAAGAAGAA
AAAAAGATCACTACACATTCTGTCGCTTGCCAAAGACACCCCTAGTTATACGTTATTTAT
ATTCTGGATTTAGGTAGGTTATTTAGACCATACAAAAAAGTTGTCAAAGATGTGTTTGGA
TGCAAAGTATTTTTGTAGTTTTTGAGGCATACCATGGTTTCTGAAAAAATAAAACCTTGG
TATTAAATACTTTGTGGTGTTTGGATGACAAACAATATTGTAGTTTAAGATACCATAGTA
TCTCTTATACCATAGTATTTTTGCAGTATCCAAAAAAGATGTCCCGACCTCATTTTTTAG
AACTAAACTTTAGAGAAATTGTGAGCGCCTCTGACTCCTCTATCTACCATCTTTTAAATG
ATCATAATTGTCGATAGGCCGCCGATTACTTTCCGGCAAGTAGTGCTCATCTAAATGAAA
ACTTGCCCATTCATTTTGTGCATGCATTGGGCAGCCAGTTCTACACGCACATCAACTCAG
CTACACTGAAGGAGCTAGGTGGAGCTCATCAAAACTACAGCGACGAGTCGGTGGTTTGTC
AATACTGAGACAAAAATGTGTTTTGTAGAAACCAAAGTATAGATTGTCCAAGCAATGAAA
TACCAAGGTTTTGGAATACTTTGGTTTTTATAAAACTCTGCTGCCAAACTAGGCCTTCCA
CTTTCAGTGTAGTGTCAAAAACGTTCTTATATTGTGGGACGGAGGGAGTACAACATAAGT
TCAACACAACAACCATAAGCTAAGCCCATTGCTGAAAACATGGGAATGCTCATTAAACCA
AATGTACCAGCACCAAACTACAGATAATGAGTTATATAAACCTATTTCCAGAAACATAAT
ATGGGATAATTACATTTTTTAATTTACAGTTGAAGATCCCTACACATACTCCACGATATG
TGCAATGCACTGATTGGGATGAAAACCTGCAGATTCAGATGTAGAATAGTTTTTGTTTAG
CCGAGCAATGATATAGGTCAGTTGACAACTCTCCTTTTGATAAATTTAAAGAAAGCTTCG
CTTCAGCAACTAATACCTCAGATGGCTTCAAGAACTTACACTTCCCATAAGTTAATTGCA
TGAATTCAGTGGAATTCTTTGGGCTTGCTTCTCGAGGTTTTTCCACATTTCATCTGCAGA
TGTAAAACATGGTAAGAAACTCGAATAATCTTATCAGCTAATGAAGATAATCAATGAAAG
GGGCCACTTAGGTCATGGATATTTGAGAATACACAGGAAACAAAAAGCATATCCATTATT
GTGTGGTAAATACAAATATTCTAAACATCATACCTGATTCTGATGCTAAATTTAGTAAGA
GCACTTCAAAAAAAAAAGATTGTAATAAGGAGTAAAGAATATATTATTCTCTTCGTTCTT
CCTTGAAATATTAAACAAGCTCTCATTAACTAATTGGCATAATCCCAATTGTAAGAACAC
TAAAAAGCTACTCCATCCCCAAAATGAATGGCGCTTTTGGCTTCTCAATCTTCAGTGTAT
TTTTTTGAAAGGAGGCAAAAGATTTGCCTCATATATTAAATAAGGTAGAAGAGAGTTTGA
TACAACACACATGTTACGGCATGCCAATTATTCTCGCAATAAAAAAGACCCTAGTTTCTT
TGCCCCGACGTTGATCCAAAGGTTTGCTTCGTCCACGATTAAGTTGAGCAAGATTGGCGG
GGGCGCGCTCTTATGACGAAACACGTGCATTTCGCTCGTTCCAGATGACCCACGACACAA
GCATGGTGATCGAAGCCTTGGCTTTTCGGTCAGCGGTGCCCCTGGCGCTGATGCCGGCCC
ACCACACCTCCACGGAGTCAAACAAGTGTCATGAAGTGTCCATATCGTGCATGCGAAATT
TGTGGATGACCAGTCTTCACAACCTGAGAGTGAAATGACACTGGAAGAAAAGGTGAGTAC
CACATTCCTGCACACCCCTGCACAGGGGGCAAGAACCGCAATTTGGCCAGCCCCGTCTCT
CCAGTCTGTCGGTCAGTCTGTCGGCCGTCCAGATCCTATCTTGGAGCGCTAGCCAAGCGA
AGAACTTGACCTTCGGAGGGGCCCAAGTCTTCCAAACAATTCAGTCCATAGGGGAGAGGA
CCATTCCTAGAAACTGCGCCTTATAGGCAGAGGTCGCGCAGTAAAGACCCGAGACTATGT
GCTTCAAAAGGATGTCATCCTCCATGAGCAAATCGAGATGTACCTCATGCACAAGCATCC
AAAGGGTGAAGAACTGAATAACATGCTCGGTGGTGACCATTGTGGGCGGTTTGATCATGA
GGATCCATGCGTTCTCCTTCAGTGCCTCCCGCACTTTCCAATGCTTCCGCGCGGACGCCT
CATAGATGAGCGGAGCAATGTCTTTGGGTTTGCGTCCGAGCAGCCAGGGAGAGTCCCAAA
ATGGTCTTTGCACCATTCCCGACCGTGATGATGGTGCAACCATAGAAGAAATTAAGATCA
TCATCATCACACGGGTTGCCACGCCCTACCCACAGCTCTGTGGGCTCCTTCCATTCGTAC
CAAGGCCACCACAAACGCGAGGCCCGAGCGAACTTGTCAGTGTTAAGGACCCCCAGCCCA
CCATAGGCGAGTGGCCGGCTGACGATGTCCCAGTTGACCTTGCATTTCGCTCCGGTAGTC
TTATCCGAGCCAGACCAAAGGAAGGCTCTTTCGAGTTTGTCAATACTTTGGAGAATGGAG
GTTTGGATTATCAATGGCGTGATGAAGTAGACCACTTGGGAGGCCAGGACCGACTTGACC
AGAGCAGCACGCCCAATGGTGGTGATGTTTTGGCCGTCATATGTTGTCAATCTGCTTGCC
ACTTTATCCACAAGAAATTGCAGGTCAACGAGCTTTAACTTCCACACGGAGAGTGGAAGC
CCCAAATAGCGCATCGGAAATGAAGTCCGAACAGCCGGCAGCCCCTGGGTGATGCGTCCC
AAGTCCAGATTATCGCAGCGAATGGGAACCATGGAGCTCTTATGGAAGTTAGTGCACAGC
CCGGTGACCTCACCAAAACCCCGCAAGATGGCAGCGAGGTTATCCACATCTCTTTTGATC
GGAGCAATAAACACCGCCGCTTCATCCGCATAGAGAAAAGTGCGCACCATGACCCCTCTG
CCCCGAATTTTATGAAGCAGCCCCTTCCTTGTTGCCACGTCCAGAATATGCTTCAGAGGG
TCAATTGCAATGACAAAAAGGAGGGGGGAGAGGGGGTCCCCTTGGCGTAGACCCATGCCA
TGCTTGATGGGGTCACCCGCCACCCCATTGAGGAGGATCCTCGAAGATCAGGAATAGAGG
AGAGCAGCAATCCACTCCCGGAATTTGTTAGGGAAGTCTTCAATGTATGACTTTGATTGC
AAATAGTATGTCTACAAAATTAGTATAAAGCCATGGTATTTTGCAAGATAAATACAAGAT
ACCATTCGTATCCGCTTAATCCATACTTTGGTGCATATTAGTGGTCAAAGTAGTGCATCA
AAGACCGCGAACAGTCAAGTATGCCTTACATTTTGGAGGGGGTAACTTAGGTGTGGCAAG
TTGTGGCATGCAACCACGCATGCCCAAAGTAACATGCAACCACAAATAAGTACTGCGTCC
ATTTCAAGATATCTGTTTTCAGCCTACCATGCGCACAGGTCAAGAAAAGAATTCATCAAA
ACTGATTGTGCATTTATGCATACCTTGGTGAAATGATATGCTGCGACAATTTAACATCTA
CCAGTACAATTTTCATACAAATCCAAATGGTAGTGTGTATTAGTGGCCAGAGTTTTTAAA
ATTTTGACTGCACATTCCAAGGCAAGATCTATTGACAACAGAGGTAATATTGTTAGGAAA
GCAATTTATCTTTATTGAAGGCCCAACGAGCATATATATATTGCACAAGCCTTGAGGTGT
AAGGAAAGTAAACATAGACTAATANNNNCTCCTAGACTAATACTAATACTTCCCCCGTGA
AAACCGACACATCAAGAGAAGATGGGTTGTCAAAAGATGACACATCAAGAGAATGAAGCA
TTGCTTAAAGAATCATGGCCCGTGAAAACCGACGACAAAAAAAGCTCGGTGGCAAGAGAA
TGGGCTTAGATCAACAATGCAAAGAGAGGCCACAAAAATCCTATTGAGAGGACAATGACC
AGAAAAAAGGCTGACGGACAAAAATTTGATGGACTCACAAAAAACAACTAGAAAGTGCAA
CACTGGACAATGACATGAGAAACACAAAATATCAACGGACTTATTGGACGCAGCGGAAAA
TATAGAAAACTAGAAAACAACTAGCGAGAAGAGCATGCAACACCAGACAAAGGTGCATAA
GCATGCAACACTGGACAAAGGACGAAACAACCACATTGGATTTTTTTAAGCTAGCCGCTA
ACGGGAAGGACTAATGGTAATTAAGAGAACAGCAAACAGAGATGTGGTTCATTGTTTAGC
AGCAACCAGCGCAGACATGCATGCAGCAGTAGCCCGCGTAGCAGAAGATAGCAGCAGCTA
TGCACACAGAAGCAAAGCTGCACATGCCGCACGAAGGTAGCACGCAGCAGCAACGTGCGG
AGCAGAGGCAGCGGCGGCCAAGAGGAGCACCACGTAGCAGGAACGTCATGCTACTTGCAA
GGAACGGTAACAGGACCATCACGTAGCAGCAGGAACTGCTGCCCACACCGAAGCAGGGGT
GAGCAGTCACACGCCCACGCAGCTGT