morexGenes - Barley RNA-seq Database

Contig contig_158638
Source Contig contig_158638
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_158638 (7564 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_158638

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19772	2	1551 bp	MLOC_19772.2	Available	Available	LOC_Os05g49890.2, FRAME:-1, EVALUE:4e-135, 13105.m05345 protein ras-related protein, putative, expressed
CDS Structure of MLOC_19772

Contig Sequence (7564 bp)

>contig_158638 7564 assembly3_WGSMorex_rbca.fasta
ATAGCGCACTTTTTAGGGTCCCGGGTTGATTTTTGATGCTACATGAACCCTGCCCACGAC
TATCGAGACGTCGCAANNNCTCGATGTTTTTGTCGTTTCGGGCCAATTTCGTGGTCTAGC
GCACTATTTTGGGGTCCCTGTCGAAGTTTGATGCTCCATGAACCCTATGCACGGCTATCG
AGATATCCCAAAAACTCGGTGTTTTGTCGTTTTGAGCCAGTTTCGTGGGCTGTAGCGCAC
TGTTTTGGGGTGCCGGGTCGACTTTTATGCTTCATGGACCGTGTGCACAGCTACCGAGAA
GCCGTAAAAACTCGTTGTTTTTGTCGTTTCAGGCCAGTTTCGTGGGTTATAGCGCACTGC
TTTGGGGTCCCGGGTGGATTTTTTATGCTCCGCGAACCTTGTGCACGGCTATAAGACATC
GGAAAAACTCGGTGTTTTTGTCGTCTCACGCCAGTTTCTTGGGCTATAACGCACTGTTTT
GGGGTCCTGGGTTGATTTTTGATGCTTCATGAACTGTGTGCACGGCTATCGAGACATCGC
AAAAACTTGGTGTTTTTATCGATTCGGTTAGTTTCATGGGCTAACTGTTTTGGGGTCCTG
GTTCGATTTTTGATGCTCCGTGAACCGTGTGCACAACTATGGAGATGTCGTAGAAACTCG
TTATTTTTGTCTTTTCACGCCAGTTTCGTGGACGATAACGCACTGTTTGGATCCCCGGTC
GATTTTTTATGTTCCATGAACCGTGTGCACGACTATCGAGACATTGCAAAACTCGTTGTT
TTTGTCGTTTGGGCCAGTTTCGTGGTCTAGCGCACTGTTTTGGGGTCCCGGNTCGATTTT
TGATGCACCATGAACCCTTTGCACGGCTATCGAGACGTCGCAAAAACTCGTTGTTTTGGT
CGATTCGGACGAGTTTCGTGAGCTATAATGCACTATTTTGAGCTCCCGGGTTGATTTTTG
ATGCTCCATTAATCAGTGCACGGCTATCAAAACGTCACAAAAACTCGGTGTTTTTGTCGT
CTCGGGCTAGTTTTGTGGGCGATAACGCACTATTTTGGGGTCTTGAGTTGATTTTTGATA
CTCCATCAACCCTGTGCACTGCTATCGACACATCCCGAAAACTTTGTGTTTTTGTCGTTT
TGGGCCAGTTCCGTGGTCTATAGCGCACTGTTTTGGGNNNNNNNNNNNNNTTTTGATGCT
CCATGAATCCTGTGCACGGCTATCGAGGCGTCGCAAAAACTCGTTGGTTTTGTCGTTTCG
GGCAAGTTTCGAGGGTTATTGTACATTGTTTTGGGGGCCGTGTCGATTTTGATGCTCCAT
GAACCCTGTGCACGGCTATTGAGACGTCGCAGAAACTAGGTGTTTTGTCATTTCGGGCCA
ATTTCGTGGTTTATAGCGCATTGTTTTGGGTTCACAGGTAGTTTTTTTATGCTCCATGAA
CCGTATGCAACCTAGCGAGACATCCCAAAAACTCGGTGTTTTATCATTTCGGGTCAGTTT
CCTGGGCTACATCCATGGCGTGCGCGCACGGGATCCGTCCATGGCGAGCGCGGGCAGCGG
AGCTGCATCCATGGCACTCGGCCCCGGCGGAGCGGGCGATGACGGGCGTCCCCGAAGGTC
GGCATCCACACGTGCTGGAGACGACTCGCAGCCTCGACGCCGCGAGCAACCTAGTCGAGG
AATGTTGCGGTGAGGTGTCGATCATCGACCCACTGCTGCAACGGGATGCAGGCACGGGGG
TGTGACGAGGGAGGAGAGCGACCTGCCGCTAGAGCTCCTCGTGCTCGGCATGCTGCAAAA
TTGTCCCGGGGCCGTGCGAACAGAGAACTTTGGAAGGATTTTTCCTAGTGGGAAGAAGAA
ACATGAGGAAGATGTGGGAAGAGAAAGATGAGACGGTTGGAGTAGGTAATTAAATCATGG
GGCTAGCACATGACCGACCGAAAAGCTAGCACGAGTGGACCGACGCCTAGCATACCCGTT
TAAAAAACTATAGAAGTTGAAGTTGAAGAAAATTACCCACGATTGCACCAATAAATAGAT
AACCCTTTGTTTCTCCTCACATCAACCAATCAAATAAATTGTTATCATTAGATTCCAATT
CTTGAAGCTGGAGTTAACTCGAAGCTGCAACTCCTGTGTGAATCTGCTTCAAAGTGAATT
TGATGAAATAAGAAGTTAAAAAGTATTTTTTATGAGACGGAGCAGTTCCAAACAAACCCT
AAATTTTATGGCCTTCAAAAATAAATTGAACCAATTTATAAGGAACTTCAATCGAACAAT
TTGACACCATTTATCACGGCTACATGGCCAAAAACCACACAAATAACCAATTTATCCCCG
CTTACCAAGGATAAGGGACCAAGAACTATACCAGTAACAAGGGTACAATAAGAACAATAA
AATGAAGGTGAAGAAGAAGGCACGACCTAGCTAGCACAAAGACCTTCAGGGTTTAGAAAG
CCCAAACTAAAATTCATGAGACCGGCCTAAATGGAGATGAATTTCTGGTCAGGCCGGACC
AAGCCCAAGCCCAGCCCAAACTACCAACCAGACCTATTTTTCAAGCCGAAACCCTGCTCA
AACATAAAGCTCACCCCAGGTTTTTCAGGCCAGGGCTCTAGCCATCAGTCCAGACTGCCC
ATGCCCAGGTTTAGGCGTGAGGAACACAGGAGCTCATCCACAGAAATTCGAAACAAAAAG
AGAACACATAGAAAGGCTTGAGGGCTTTGAGATGGACATGAAAGATACTCCCTCGTCCAG
ACTGCCCATGCCCAGTTTAGGCGTGAGGAACACAGGAGCTCATCCACAGAAAATCGGACT
AAAAGAGAACACGTAGAAAGGCCTGAGGGCTTTGAGATGTACTCTCTCCGTTTATTTTTA
GTCCGCATATAAGATTTAGTCAAAATCAAACTTCATAAATTATGACTAAATTTATAGAAC
AAAATATAAACATTTATAATATGAAATGATATCTTTTGATATATATTTGATCAAACTATG
TATCACTTGACTTTAATCAAATCTTATATGCAAACTAAAAAAACAGAGGAAGTACATGAA
AGGTACTTCCTCAAGATGGACATGAAAGATACTCCCTCAGTTCCTAGGTACATGTTGGGG
GAGATAGACTAGTTCTCTCCAACGACTGGTTCTCTCCAACAAGTATTATGGTACATAAAA
CTAAAAAAGAAGACTGGACACCGTATAAGTTCAACAGGACGCTGGAAATGCAATTGGAAA
TTCGACAGTGGTGACATTCAAACTGTTTGTGTCACGTCTGCTGTGTTCTTCAGGCCATCT
GCAGCGTCAAAACACAACAATGTCGTAAGAACCACTCGCTGTCTACATGTCCAACAGACA
CAAACGCTTAAAAACTGCATAACCAAGGGCTAACAAACTGCAGATGTAAAAGATAGATAT
ATGATCCACACAGTGAGCCAGCAAGGCATAATAATACTGATGAACCATCAAGGTGGCCAA
CAACAAATCCATGGCAAACAACATGATGTAGATCAATGTTCACACAAACAGTTTGCAGCC
CACCAGACAAGGCAAGGCAGACAGGAAAAACATCCGGCTTGACCACTCCAAATCAAGCCT
TCAACCTAAAAACCAGACTCGCACAAGTCTCCGGCTCTCAAAGTATTGATTGATAAGACA
AGACTCGTGATCCTCTCTCTACTCGATCAGATCGTCATCGTCATCTGGCAGTGGCTGCGC
CGCTGCAGCCGCAAGCTCAGCCTCATGCCTGCACAAACCACATCAAAGAGCAGTCAGCAA
TTCATTCATTCAACTGACTGTACAAAACCGAACCTGAGCAATCCCAGTGAACAAATTTGA
AAACAGAGGAAGACACTTACTGTTGCTGCATGGCCAAGTCGAATGTCACTTCCGGGGGCT
TAAGAGCCACAGCTTCAACGAAGTGAATGTTGGGATCACTGTCATCATCAAAGATTAGTT
AGTACCAAGACGGATGATGCAAGGATACAGCCAGAAAAAAGGGGAAAGGCAATTACCCAG
CCAGCTTCCTTGCAAGATAAAGGAATGGCTTCTCAAAGTTGTAGTTGCTCTTGGCAGAGA
TCTCATAATACTGCAGGTTCTTCTTCCTGTGGAATGTCACCTGCTTGGCCTTAACCTGCC
TGTTCTTCACATCAACCTTGTTCCCGCACAGGACAATGGGAATGTTCTCACACACCCTGC
AACATGTTAATATACAGACATCAGAACACCCTGCAACATGACATTGGTGAGGACAAAGGT
GATTGCTTCAGAAGCAAACCTGCACAAGTCCCTGTGCCATGTAGGAACATTCTTGTAGGT
CAGCCTTGAAGTGACATCAAACATGATTATCGCACACTGACCATGGATACTGCACAAATG
ATTAAAGAACAGCAGTGAGTCAACCATACATACAAACAGTAAGCTAAGCATTTTCCATTG
CAGAACCGTAGTTAAAGCATAGGCATCAGCAGACACTTACTAGTATCCATCCCTAAGTCC
ACCAAACTTCTCTTGCCCAGCAGTGTCCCAGCAGTAGAATCGGATCTTTCCACAGTTAGT
GGTGAAATCCAATGGGTGAACTTCAACACCAATGGTGGCTGCAAAGGGGAAAATTTGTTA
AATTTCTTAGCCATGATACATGCCAAGCGGTAGAGGTGCACAAAAAGAAACTTTCAGACA
TACGTTCATATTTCTTCTCAAACTCTCCAGTGAGATGCCTCTTCACAAAAGTGGTTTTGC
CTGCAAACAGATAACAGTATCAGAACCTCTGCTGTCACCGGGGGAGAAGAGTCACAAGAC
AAAGCAGGTAGCCAATATAGTAACAAGTGCAATTTGAAATATGGTATGGTAGGTCCATGC
TTGATTAGAGAACATGATGCCCGAGGAGCCGATATAGCAGAATAAAAGCACTAATACAGT
ACAGAAACAAAACTATCGAGATATCAAGGGATTTTTCACTAGTAAGCACAGCTATTACTT
CCATTGCACCTAAACACAATTCTAATAGGCAGACATTTTTATACTGGTGCATGAAAAATG
AAACATTTCATAACCAGTCTTTGCCTATCAGTAATGTTTGATCTAATAATTCATAAAACA
CACACTCCGATGTTCAAATAATCCTTTTAATGCGTATAATCTGCTTGTAATTTTTCAATC
TATATACAGTTGCTATAACTATTGGGGCAACTGCGTATAAGAACAGCCCTGTCTTGTTAC
GGAAACTGTTTCCTATTGGTAACATATATGATGTAAAAGCATCAAGACCTCATGATATAA
ATCCCTTCCGCAACTACCGACTCTGTTATCGGTGTGTTCCAAAACGGAAAGCATCGAAAA
CTGATTATCCCTTGCAAACGAATCGCGAAACCCTTTCGTGGCACGGATTACAATCAGCCC
CGCAATCTGTACCACCTACTACAGCATCAGATTCCATCCGTAGGCCGCGCAAGGCCGTAA
CACGACTCAGATCTCGCCGAAACGACGGCAACGAGCAGCCGCATCGGACAGATCACGGAT
GACCTAACCTACCAGAACCACACAAACAAGACAGAGGGGGAGCTCACCAGTCCCTCCGTC
GCCGACGATGACGAGCTTGAAGCTGGGGTAATCGACGGTGTTCTGGTTCGGCAGCGCCTG
CGAGAAAGCCAAAACGAAACCAGATCAGACCTCTGCCCGGCCGCGGATCCGACGCGGAAT
CAAACGGAGGACGAGCGTGCGGGATCGGACGGGATTAACTCACCATGGGGGGGACGCGGT
TGAGAGGCGGCGGCACGGGAGGGAGGCAGCAAAACCCTAGCTGGGGGGGAGGAGGAGGAG
TATTTCGAATCGGAGTTGGGGGAGGCGGAGGAGGTGGGGGTTTTATATAGGCGGCTTTTG
TTGGGATTCTTTTTTTTTCTTTCCTGTGCGGGGGCGCGTGGGTGGGTTAGCTTTGGATGG
ACGCAGGAATTGTGGCCGCTGGATCGGCGCGGGGGCGCGGGGTTGATTAGCTTTGGTCCC
ACGCGAGGTTGCCGGCCGTCCGATCCGGCTGCTGCCGTTGGGTCGGGGATGCGCGGCGGC
GTGGGCTGTGGCTCGGCTCTTTTGTGTGTGCGCCTGCTCCAGAATTCCAGAAACAACGGT
CGGCTCGGTCCACGTATCGTGTGATGGGCATGGGCGGCTGCATCCCTCGCCCGATTTCAC
ACTTTGGGCCATGGCCGAGTACACTAACGCTGCTTTTTCTTTTTTTTCTTCTCTCTCTCT
CTCCGGATGATGAGGGAAAGAGCGGTGCTTCTTTCTTTCTCTTTTTCTGTTACAAACGAA
CCGTTGCAGGCAGAGCTTGAGAAAAACTTGCAGTGTGTTCCATGTCTCACTTAGGTCACT
TTCCAATGCATTGATGTTAAGATGAGGTGTTAAGCATATTAAATAGTTTAGCAACTAAAG
TCTCCAATGCATAGTTGCTTAGCTTATTGTAGCTAAGCCTTCTTATTTAATGCATTTGCA
ACTAAAGTTGTGCATGCATTGGTGCATTTTCTTCATTTGATTGTTTTACCTAGGTTCACG
CGCTTAACATTGTTTTTTCCTCAATCACTACACTCATCTCTCTCCTATTAATTAACATGT
CACATCAGTTTTTTTACCTATGTGACAGCCTTAGCACATGTACAAGGTGGAGCATTGGGA
GTAGCCTTAGGGCATGTCCAATGTTTAGCCCATACGTGTTGCCCCGCGGGCCAGCTAGGC
TCGGATGCCATGATGACAGTAAAGCTATACCATGTAGACAAGAGGTGACTCTTGCATTTA
GAATAATTAGGGTACTCAAGGGATTGGACTCCCCGATCCCTGCGTCGCCCGAGCCGGGCA
ACTCGGGAAAACCATAGTCGCCGTCGTCCTAGCCACAACCTACCACCAACCCCCCGCGTC
GCCGTTGCCGGAGGGCCGGTCGAAAAAGCTGCATCGGGCCCTGGGAAGGCGGTGACGGGG
CCGTTTCTCTCCTCCCTCACCTCCAAACCCCCTCCCTCCGCCCGCCTCTTTCGAGATCCG
ATGTTCGGTGGCGTCGGCGGCCTTCATCGGCAGCGAGGCCTCTACCCTGCTTGCTGATAC
GTTTTTAATTTATCTATAATTTTTGATTATTTAATGCTATTATATTATCTGTTTTAGATT
TTTTATATGCATTTATATGTTTTTTATATTATTTTTGAGACTAACTTAGAGCCTAGTGCG
AGTTCCTATTTTTTCCACGTTTTTGAATATTGGAGATAAGGAATATTAAACGGATTTCAA
ACGGAATAAAATCTCTGGAAAGATTTTTCTCGAACCAGAAGACACGCACGAGGCTTGGAG
TAGGGGGCAATGAAGTTGCCGGAAGGCCACAAGCCTCCAGGGCGCGCCCTGGGGGGTGGC
CGCGAACCCTGGCTTGTGGGTCCCGTGTAGGTCTCCTAACCCTAATTCTTGGCTTGTAAA
TTTCCAAATATTTCCTCTTGTCAAAAAGAGCCACGAAAATATTTTTACGCCGCCGGGAGC
CTCTATTCCCGAGAGATCCAATCTGGGAGCCATTTCCAGTAATCTACCGAAGAGGGAATT
GATC