Map Locations of contig_158616 (10965 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_158616

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_19714 5 4313 bp MLOC_19714.1 Available Available LOC_Os07g08050.1, FRAME:-2, EVALUE:0.0, 13107.m00794 protein expressed protein





CDS Structure of MLOC_19714






Contig Sequence (10965 bp)

>contig_158616 10965 assembly3_WGSMorex_rbca.fasta
CTCCTTTACCCGGGCTTGGGACCGACTATGTTAAGACAACATAGGCAGAGCTAAGTGGAG
CCCCAAATGTTACACTTAATTTTGTTTTTTTTCATCAACGACGCACTACTATCCCATATG
CCATGAAAATTGTCAAGCACACTTGTGCCACACTAATACAAACATCTACAAAAAAAATTC
TAAATTTTAAAAATTTAATTACTATTTTTTAAATTTTTACTGTTCTTCTAAACTTTTTGT
TTATTGTATCAACCAAATAGGTACTGTTATAATCGAATCGGCATCACTGACATTCATGGC
TGTCTTCAGCCTGACAATGCACAGATTTTAGGCGGGAAGAGGCGCCATGACCTGCTTGCT
TGGTCCGTTCTTGTTCGCAGCCTGCCCCCATCCTAATGCTCTACGGGCTCTAAGCATCCA
TCACGGTGTCGGTCTTCTCCGGGGATGAAACATGTACGTCTGGGCTGAACAGTTCATAAT
TAGAATGGGCATTCCATGTGTTGCGGTTTGCAATTGGTGGATCAGCTTATCGCATCGTGG
ATCATCAAACTTTCCTGATGGTAGACATAGTTAACCAAAACTAAGCATGTTGGATGAAGC
GCATTGATCACATTTTAATCACCGAAGAAAGACTTCAAATACAACCATATATAGTTATAT
AGCTGCGCATACCAGGGGAACTCACGGCTTAGAAAAACTACTTTGGTACGGTGAACAATT
TGCCATGATGATCAGCACCCAGGCCACATCTGACTCATGCATTCTCCCGTCTTGAGACAC
AAATGCAATGGATAAGGAGACCCAAAGATACATTCGCGAGCTGGTCGTACAAATAAATGC
AACTATGATCCTAGGCCATTCATGATAAATACAAGGAAAGGGGGACAAAAGGGCGGTCAG
CCAGATTGTATCCAATGCACCGGCATACACCATCCAACTGTTGTTCCCCAAATTTCATCC
GAAAAACTACGCTCCTGCCACAACTTACAGTCCAAAAGCATTTCAGAGGAGGAAGGAGCC
GCATTGTACTCTACCACCCTAAGCGCTACCACAGCCTGTATACATGCATTGAGCTGAAAG
TCAGGTAATCTGAAAAGTTTAGAGGGGGTAATCAAGATGAAACAACCAGAAGATTGAAGA
ATGGCATACCTATCACACATCTTCCATACTTGCTCTACAACACACTCTGTTCAGTGAGTG
CATCCGAACTATGATCAGTGGCAGGAGAAAGACTACCTTAAGCAAATGATGATTGCCTGC
AGGAAAATAACAACTCGTCAGGCAAGGTTGATGGCTCAAAATAGGATTGTTTTTTTCAGG
GAAAGACACCATGGGCGACTTCATTCAAATGGCATAAAAGTTGCATCATTTGCTAGTTGC
GCTAATATTACATCGGATGGTTCATGTTGCCACAGAATAGCGCCAGAACTCTCAGAAATA
GGATATAGTTTTAATACCATGTTTGTCGACATCGAACAGCCTCTTGGCGAACAACCCTTT
TCTTATCATCAAGAGCCTTGATTGCTGCTTGTAGGACCTGCATGAATATACCATTCTGCA
ATGAGTTCTCTATTATTCCTTCAGAAGGAAACATTTCTTACTTGACAACAGTTGCGATAT
TAAGACAATCTAAGTTCCTACAACAAAAAATTAGTCATAAGATAGATATATGCCATCTCA
TTTATCCATAACGTTCTAAAGTGTGCAGCTAAAGCAGGAGACCTAATTATCTCCAACAAT
AAGGGGAGTGCTGTCTATGATAAATAAAAAGCAGTGTAATAATAATTCAATGTCTTAAGG
GTCATACTGTGTATGCATATATTTCTCAACAATCTGCATAAATAGAAAACTAACCTGTGG
TCGCATGCGATAAACTTTTGAGTGGGGAAAGCTGGACATGGCAACAAAACATTGCAAGGC
CGTCTCCCGAACAACCTACAGGAGAAAGGGAAAAGGATGTGAAACATGCTGATCTTACAA
GTGGACCAAGTGGAACTGAATATGAATAACGCTAAAGTACCATCATGTGAGGATAGGAAA
CAAGTTGTGCAAGTACACTGACAATAATGTTCATATTTTCCAGAATGCATTCTTTGCCTG
CATAGGAAGAGCAAGATTTAGCGCCGGAAGCAAAGAAATTCCATCAGGAATTCAGTAGTA
GAACACAGAATGGACCAGTCAAGTTTGCAGAATAAACAAAAGAAAATGAATAATCTGAAT
GGAGTAAAGTAAATGATATCACCTTTTTCATCCATCAACATTCCAGATAAGACGAGCAAC
AAACTATATACCAGATCTTTATCCTGAATATCCATGCTCAATTTAGCTAAGATATCAACC
ATGACGAGCAAAATCTGATAAAACAATTAGTTAAACAATTGGGCAATTAGTATGCTGTGA
TCCGACAAAGATTGTGCATGCTTCAATCGAGAAGTAATAAACCTGATGGGCTTCTGTTAT
AACTGCTGACACTGGAGCATTAGAAATAATATGTCCAAATGCTCGATACATCACCAATCT
GCAGTGGATGATATTTTTCAGTTGCTTCAAGACATTTGACAATTAAGAAAATCACTAAAG
ATACAGGATCAGTTCATCAAAGGAACTAACACTGGCTATATCAATAACTTTTAATCAAAA
ATACATTTTTTTCTCTAAAATATAAAATCCTAATGACAAGAATTCATGAGGAAAAGCACA
GTATGGAACAAAATTAAGGAAAGTGATACAACCTAGTCCCTGAGGTTACAAAATTGCAGT
ATATTCAACTGATGTGACAACTCAAATGGTTTTTCCTCCGAGGCACACATAGCATAAAGA
ATTCCTTGACTTCTAAACTCGTGCACAGCTCATTTTGCATTGCTGTCATGAAAATTATGT
TACAGTACCATCTTGATATCCGAAACGGTGTCATCACATTGCTTACTTTTCACTAACTCG
TAAAATATGAAAAAGGGTATGCAAAATCAGAGTACACGAATAAACTAAGCTAAACCCTTG
GGAGTTTCACAGGTAACAAATCAAAACTAAATGCATAAGTGTCCAAGCGAAATAATAGAA
CAGATATGTCCACATATGACCTCAAAATAACAGAAAAAAAAATAGTAGCAAAGATATGAC
AAAAAGGGAGATACTACTGATGCATAGGCAAAGTAATAGAAACATGTTATACAAAAGCAT
ATGGTTCAAATTAAATACAAGATATAACACAAAGTGATGAAAATGTTGATACCTACTTTG
TTGTCATCTCCGGGGTCTCCTTAATTTTAGAGAGAAAAATTGGCATCAGTATTGAGAAAA
AACGCTGCTTATATAAAAACTTTATTCTTGCATGGAACTTTTTATTTAGGCAGACTTCTG
AATCACTCATCATCACATGGAATGCACCAGCTGCAGCTGTTGCAAGAGAAGCATCTGACG
AGAGGTTGTCATTGTGTTCTTCCTGGTGGGGTGGAATGTTCGCCGAAATCTGATCTAAGA
CCAGGCATTTAAGAAGAAACAGTGAAATTTCCTTCACTTTTTCATCTCCTCTCATAAGCA
ACCCTTTGCCAATCCATGCCAAGCCACATAAGATATCAAACTTTGAACCTATGCTTCCAG
TTCCAGGCAAGCTGTCTGAGTTAGCACTATCTGAAGTGACAGCAGCAGAGTGAGACATCT
TCAAACTGCTGCTGGTTAATACAATTGAGAAACATTCCCCAAGAATAACATCAAGTTTCT
TATCCAGCTTATTCTCATGTGAGAAGTCTGAATTCTGTACATATTTGTTGAAGATAGAAG
CTAATGCATGAGCAGCTGGTATATGTCCATTCAGTAGAAAGACCGAAAAGAGGTTAATAA
TCATGATCATTTCTGGTAAAGGTGTTCGAGGCCGAAGACCGACTATTACTGATGAAAGCA
TACACACAAGGGCTGTATCTTCAACAGAGTGTGCAGGAACTAACTCCTCTACAGACAACA
GATGATGTGTCATTGTATTCACTGGGAGAGACAGCTTCGATGATACTATGCCACATGCTT
TCTGAACAATCAATGACTGTTGTTCCTCTGTGCAGACTCCTACTAATAACTTCATTCCCA
TCATTAGCGAGTCAAGAAGACCCTGAGAGAGAAGTGAGAGTGTGCCATGATTACGCAGTA
CAGATTTATACGTCATATAGATACCTAAGTACCAGTAAATCAACTAAATTAGAAAAATAT
TCAGTTTGATAGAGCTTCACCTGTGATCTGATTCTATCCAGAGTAACCAAGTCCCCAATT
TCATCCCACAGTCGCAGAGCAAAGCTCAAAGCAAGTTCATTGAGACCACCGGAAGTAAAC
AACCTGTCATAATGGAGATGGTTAGTCAGAGAGAAGATGATATTTGGCTAACATATATCC
TGTGAAAAGGCTAGTACAGGGCACACGTATCAAGCATGCCACCAGTAACATTCTTCAGCT
ATCAAATTGGTCAAGTATCTGAAACCTTTTTTACAGTTAAGTTTGTATAAACTGATAAAG
ATGTTTCAAGATTACAGACTCGTTGTAATACATGTTCGTTGATACAGCAATACATACTGG
AAGGCAAGGTTGGCATACCAAGGAAGGAGACGACTGCAGTAACAATCAATCAGACAGATT
ACGTATTCCACACATTCTATACTTCCATTAACCTGCATGATGAATAAAATAATAGTTTGG
TTGCTAATAAAATGCAATTGCAGGAAATAAGAAGCCAACAGGAGGATTTGATACATGCCT
GAGAAATATTTGTGATGACAGCTTCTTCAAGTGATCTGGCAACCCTTAACATATAGTTCA
CACTGGCGGTGCCAACTTCAAAACTTGCTTCAAGTCTTAGATTCAGAGGCATCGATGCAT
CACAAGATTCAGTCAAACGAATAATCTTGTCAACAACAATTCTATTGTAGACCGTTTCTC
TTTTAGAAGCACCGAATTCCACAGCAGATGAGCCAATGTTAGTCAATGCTTTCAATGATA
ATCTCCACAAATGTGCATCTTCATACTTGCTTGTAATTACTGATGTGAGCATCAGCAAAA
TATCCTCATAAGCATTTGCCAGTACAAGTGAACATTGTTCCGGCATAGTTGCAAGTATCA
GCAAACCCTTCACTGCAAACCATTTATAAGAAACAACCATATTAGGATAGACAGCTTGAT
CCTCGTCAATGATTCTAAAGAAGCACTGAAATTCAGCAAGAGAAAAATAAAAATTAAGAG
TTCATCAATTAAATACTTGGAACTAAAACACAACCTTGATGAATAAGGTAGACCTTATAG
ACTAGAATCTCTAGAAATGGCCAAGGAGTTAGTGACAAATAATATGTAGACTGAAAGAAC
ACAGCTATGGACGGCATGCCTATTTGCAAACTAGATGCACGACCTTCTGTAATGAGGAGT
TCTTTTAAGCAAAATCTACAAGCATATATCAGGAAAGTTCAGATAAATGTGACAGCGCCT
AATAGGTGCATGTTATCTTACAAAATGTGGTATGTAGCAAGTCATAATCAAAGATTGCAA
CATACCAGCATACGAAACACATTCTTTTCTGACCGCTGACTGGATAGTCTGAGAATCAAT
AGTCAACAATTTTCCAGAAAGCTGGATGAATTGATCCAGCTTTTCCTCTAAGATGAGCCA
CCAGGACTCCTCTGCTGGGAAGCCTTCTCGAGATGCCACAGCGACTTCTCGGCAGGATGA
AAGCATTTGAACAGATAAATAGAGAGCTCCATAGTTAATAGCAGCAGGGGATGATCCATT
GCCGATGTTCAGGTGTTGAGAATCAAAACCAGCTGAGTTTCCCAAAATATCCACCAAGCG
TTTAAAATGTGCTTGCAAAACTCTAGTGCACAAATATGTAGATGATTCAGCAAGAATGGA
AATGACACTTCCAAGGGCTTGCAGTTGTTTCTGGTTTTGCAGTGAACTACAGATGGAGTT
CTCTTCAGTTGTTACAGAATGGATGTTATTCACAATATCGTCATCCAACAAGATCAAATT
GATGAAAATATCTCTATCCGAAGAATGTATATATGTAACAGCAGTCTTCAAGCAATGTTT
AGCTTCTGATATTATTTCATTCTTATTATTCTCTGCATCTTTAGGTGACCCTGATGATAA
AAGTTGATCTGAAGAAAGGCTAAAAAGCACTTCTTTCAACTTAAACCAAATAGCTGATGC
ATGTGCAACCATTCTATCAGCTCCATAGCACTGAATGCAATTGTCCAAATATCTTAAGGA
ATCAAGCTGTACATAATATTAAAATGTCAATTTTTAGCAGAAAAACAAAGAGGGTATCCA
CTTTGATAGATTGATGAACTGGAAACATTAAGATAAGTTTAAGCTACTGACCTTTGCTAA
TGGAAGAGAGGAAGAAAGTTTATCTAAAAGCAATGGAATGGCAAAGGGCTCGAAATACGG
GCTTGCACAGAAGGCATGCTGTCAATATTTAAACAGGTCATACCATCAATAACTCATAAA
TTGTAGAAAATGTTTCTTCATTTAGAAGCATGACAAGGCGATATAACACATAACTCTGTA
GCGGCATTTAAAAAATAATTATAACGCCAAGCCATATGCTCAGCTAAAAAGATCAAATGG
TCTTTGAAATAATCTATCAGGTAAAATACTAAGTTCATACCATCAATGCCCTAGAAAGCT
CGTCTCTTGTAACACCTAAATTATCACCGGCTCCCTGCACATGTACATGATACCATGTTG
GAGAAAGGAATGTCAAGAACTACTAAGTTGCAGAATGACAAACACACGAAAATGTTTTGA
AAGTCACAATAGTTTATTAACATACATGTGTGAAGTAGACAGGAAAATATTTGCTCAGAA
TCTCAAAAAAGTCACTTGCAAATTGGTCTGCCAAACCAGATGGGTCTGGAAACAGCTTCA
TGACAACTTCCACCACATGAAAAGAAAGCTTCAAGCACTCTGGGTCTTTTTCTTCATCGA
TTGATTGACAGATCCAGTATAGCAGTTCATCATCCTGGGCATAGCGATTAAACTTGTGTT
GGTGTGTACACATCATTAAATAAATCCAGGGGAGGTGTAAATAACAAGACAAAATTAATA
TATAAAACCAGCCTCCATGACAAAGGCTCGGAAATGAAGATCCATCGATTCTGAAATAAG
TGTACACTTCCAAACTACCACTATCAAGTATCAACACTACCTCTATAATTCTTCCAGTAA
TATTGGAAGGTTGTTACACTTTAGCCCAAACATGATAACATCAATATGCAAGATTTCGTC
AACAGTGCCAAGCATTGCATAATGGAACAAGTAATATATGCTTGCCAGGTAAGGAATAGA
AATAATCACGACGGTACAAAAATTACTCCCTCCATTTCACTATAATTTATCAAGTGTGCA
AACCTGGGAGGCACCAATTTGAAGTACTATTTGATGGAATTGAACCATGTTTAACCCAGT
TAGATAGACATACTGCTACTCTATGTAATGGGAACACGCATGGTCTTTACAATGAATATT
ACTCAACTTCGGCAACTCCTAGGTAGACAAGCCGAACATACACAATTAACTGGAGTTCGT
AAGATGTTAAAAGTTAGAACATTAAGGGGTAGCTGGTTAACATGTAGGATTAACTTAATA
ATAGCTACTAAGAAAGTTTTGAGATGACGGTGTGATCCATAGTTGTCCAGAGATTGAGTA
AGTATCATACCATTGTCTTGACAGCTTCTGGGTAGTGATCAAGTATGCAGCTAAAAATTT
CAAAGCACAGCTGAAAGAAAAGAGTGATGAAAAATATATCAATAGAGAGATTAAATCTAA
TTTTATTTGAGGATACTTGTGCTAAAGATTCAATCATTCAAATCAACCTTGCGGTCAGCA
GCTGCAAGTGACTGTACTTGAACATCATGTATGAAAGCCTCAAGTAGTCTTTTGACATTA
GCAACCATAATAGTGCCAACAGATAATTTTCTGTGCAATAGAGCCAAGCATCCAACAAGT
GCTCCCCTCAGTGCTTGCCAATCTGACTGATGCCAAAAACGAAGTTCATGAGTAATGAGA
GAAGGGTGGCCAATTGGTAACCATAGGGTAAAGATCACCAAAGCAATAGCACGGCACCAA
ACAAACATTTTAATAATGCACCTCTCTGTAGGGAGTGAGAATTCTTTACAAAGCATTACT
TGAGTCAAATTTAAGGGTAAGCTAACTTACGACGAATTGATGACAATATCTAACCTAGAA
GTTCTAGGCTAGAACCAGACTCGTCACTATCTTTCTTCTTTAATTAAATGTAAAACCTGG
GTGAACTGCTTATTTGCCACTTAATAAAATCATCACTTATTTGGAGATATCAAATTGAAG
AAGTTGCAACAATACCCCACGGCCTGCTAGGTAAAATGACGACACATTTGGGTTGCAACC
CATTGAGATAAGGTTGCAGCCAAAAAATGACTAGCCAGCTGGCAAGTTTAAGAGATTGGC
AGGACAATTTGGTAGCCAATTTCTGGGCTTGCCCAAACATTGGCAAGCCAAATTTTGAAA
TTACATCAAGCAGCCCAAGTCTTGAATATGTCAAATCAAGTTGCTGACAATTTTTCTGAT
CTTAACTGGATAGAAGAGCCAGATTTACTCTTGTATGCACCGTTTTGAACAATGGTTTTT
CATAAAAGATTAACAGCTTGGATACACAGTACAAAAATAAAGCTTGTATCCCGGAAACCT
AATACCAACCCATACTCAGTCATTTGTATTCCACAACAGGGAACTTAGCATTGCTAAAAA
TTCGACCTTGCAATCAAAAAAGTGGCTGCAGTAAACATGTAATGATTAGTTTCTAGAGTG
TCGAGGCAAAGACAGCCAAGCAAAATAGAAGTACACTGGCCTATTTAATCTGTTCAAAGA
ACACCCGTTAGCTTCCCCAGATTGATGATCTTATTCCCAAGGGTTTTTATCTCACTCCAT
GTGACAATAAGAACACAAGTCCAGCAGGTAAAATTTGCCATTTAGTTCAGGTGTAAATGA
GAGCTCATAAGACTAGTGTTTGAGAAATGAGTATGTACTTCAAAATTCAAGTAATGAACT
ATGACAAAAATTTCAGACGAAATAACCATGATGCACAAAGAGAACCTTACCAATCTTGAT
ATAAAAAAGTCTGAAAATGTTGTGATGGCATTAACATCTAACCATTTAGATGAAATGCGG
GACATGATTTCCCCCAGAAGCATGATTCCTGAAAAACAAACAGAAGCAGATCCTTAACAG
AGAGCAGGGAACTATGCATGTGCCAATGAAAGATTATGACACTGAACTTAAATCTATCAT
GCAGAAAAGACTTTACAGAACAGATAATGAAAAAACAATGCAAAAGGCCCATGTTTATCA
ACAATGTAATCATCCGAAATCCTATAAAGTGTTATGCTAGCTACCAATATGCGGACGTGC
GTGGATGTGTCTCTCCATTGCACAGTACAACTTCACATTTTTTTTATTACAAGAAATCCA
CAATAATCTTTAGTGAAGAAAGAAGGCTTGACGTATGCATCTTTTGGAACTGTGCTACCT
TAAAACATGGCATAGACCATAAATTTTACTTCCATTATCAAATTTGCAAAATTTTCTAAA
ACAGATAGGCAAACAGCATGGAGGAAGAAAATGCAATGAGAGGTAAAAGAAACCTCTTGC
TCTAACAATGTGGTCTGTCGTCGTCAAATACATGTCCATCTTAGACACCTGAAAGGATAC
CATCAACAAGATCTATAAATAACTGCCCTTCCTTAGCCAAATCATGGAGCAGAGTGATAT
ATGATCTCCGAGAAACCAGGCCATACCAAATCAAAGAGCGTCAGCTTGTCCTTGTTGACC
AAGGCTACAAGAGCATCCACACCTGCAGACTGTTGCACACCACATATTACAACATTAGCG
TCCTCAAGAAACTAAAACAACAAAGGATAGCGTGTATCAAGCACACTAAGCTATGCAATG
ACAACATTTGCCCCATGTATTAAGCAACTAGCAGTTTGTACCAAATTGTGTTAGAACTAT
ATAAATTACAGAAGCCTCTGCAACGCTGGAGCTTATCTCAGTGAAGCTTTATAGGGGCTA
AATTCCTATGGGATAATCGCACAATAATTACATATAAGTTGGCTGAGACTCCGTCAATCA
ATTGTTAAGGAGTGTGTATTCGAGGCAACCATAGGAGCCGAAAGCAGAATTTATTATGAA
ACAAAGGCACGAGAAGGCATTGAGAACCCAACCCGAACAGGGAGGGCGACAGCGGGGGGT
GGGGAGGGGAAACGTACGTGCTGGGCGGGGGAGCGGGAGACGTCGACGAAGGCCTCAACG
TGGGGGACCCAGTCGCCGGCAGGGACCCTCGCCATTGCCGCCGCAAGGCAGGAGCCGTGG
CCTGCTTACAGGGTTTAGGGTTTTGCAAGTGGCGGGAGGTACCGGAAGACACGAGGCCGG
GAGATCCAGAGGCGTCGGGGCGGGAGCAGAGACGGCGGGGAAAGCGGTGGTGTCGCCGCC
GTGGAATCGCTCCAGCGCCAGGACAGGTAGGAGGAGCGGGGGAGAAGGAGACGGGGTGAT
GGAGGAGGAGGCCGGGGGAGGCGGCCCGCAGCGGCGGGTGAAGGCGGCCGGCGGCCGGCG
GCGGCTAACCTAGCGTGCGTGGAGGCAGTCCTTCTCGAGAGGTAGCGTGGGCCGGCTGAG
CATAAAACCCGATGTCCGAAGCCTAAACCCATATAGCCCGAACCTGAAAGACCCAGCCAT
TTTTTTACCAAAAAGGATTCCGCCCGTTTTATTTCTACCCTAATAATAAACCACGGATCG
CTTCTGCCGCATGTCTCGGCTGTTTTGCAAAAAAGTCCTTCTGTTTTCGCCTATTCAACC
CGTGGTCCCTCTTTAAGTGGTATCTGAGAAAACGTTTCAGTTTTGCAAATTAACCCCTGC
GTTTTGCGAGAATCCCACCCGCACTCCTTTGTTCTATCTTCTCCA