morexGenes - Barley RNA-seq Database

Contig contig_158556
Source Contig contig_158556
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_158556 (6164 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_158556

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19593	3	3392 bp	MLOC_19593.3	Available	Available	LOC_Os07g48570.1, FRAME:-3, EVALUE:0.0, 13107.m05204 protein expressed protein
CDS Structure of MLOC_19593

Contig Sequence (6164 bp)

>contig_158556 6164 assembly3_WGSMorex_rbca.fasta
GCTACGCACGACAGTTCTTCCAGAATCTTCGCGTCTGGACGAATGAGCGCAGGGCGGTGG
CGCTGTTTGGCGTCGTGGTGGCGTCGACGGATCTTCGGACTGGCAAAGATGATACAGATC
TCTCTCCAAAAGTGGGTCAGTGGACCGATGATGATGGCGGCTTCTAATGTGTGCATGTGG
TGTGCGCTTTAGGTATGCTGCACCGGCTATTGGTCCCGATACGTTATGTGGGTGGATAAC
ATCAGTTTTAGATATGGGGAGTGAGAGCACTCCACATTATCGAGTCTGTAGGTGTGAATG
ATGACTTCGGATGGTTTGATGTATATTTTTATCAGACCTTTGTGGAATAATTAATAAAGA
TGGTTGTATGCATCGATTGCAGATGCCGAGGGTTGAACCTCCTTTTCTAAAAAAAAAAAA
AGGGAGCAAGCATTTGAAGAACAAAAAATCAATTTCAGTGGCAGAGCTAGCATGGTGACA
CTTCTGCTGAAAACCGAAGAAAAGATGGTGGAGCATGCACATAAAGGGCCACTGCCACCG
AGTCACTTGTCACATCCACAAAGAGCTTACCGAACCATAGATAAAGGGGAGGCTTTACGA
CTTGGGAGACTTGTTGAGCTTACAGATCGATGTTGATATAAAGGCAGCACAGTGTGTAGT
AGAACAAAGACAAAGACAGGGGCGTCTCAACTAATCAGAATGCAGGCCACAAAGGTAACC
AACCACTACTAATTTGTCTTCTAGATAGATAGAATGATAGATACACATAGCTTACAACCA
CCACTGGTCAGTAGTCACTCATACACACCAATGGCATTCCAGTAGAGAAGCAGATGCATC
AGCAAATATCAAGAAACACACAGAAATGTCACTCACTGATTTTCTTCAGAGTCGAACTTC
TCGTCCGCTGAAAACATTGTGGTTATCATGCCGTTAAACAGAACTCTGAAAGCAGAATGC
ATGTGTGCATTAAGCAAAGCTATTAACAATTATTATCATTGTACAACCAAACACATGCTG
GCGGTCTGGTCATGAGCCCGGTGGAGTGTTACAAGCTCTACAAGGATATTACAAGAAAAG
AAAAACACCGCTATCCGATAGTACAGTTGCACAACATCTACATCGCCGATCAGTGCTCAG
ACAACATCATTTTCTTGATATAACATGCTTGAAGGGGGAAAAGAAACGGCGGAATTTTAC
GTATCACGTCGTCTCCTGGAAAGACTCAAAGCGGGATTGAGCCGCAGGGTTCGCTTGCAT
GACTCGGGCTGCGTTGGACATCTGCTCCCTGCCACCAGATTTCTGCTGGAACGGTCTAAA
CATGCCACGCTCGCCGGGTTCAATCCCCAGGGTGGTCCAGATCGAACTCTTTGCAGCTTC
GTCGGGGTCATCAATCCGGAGTGTCTTGGGAATCCACAAGGATTTTTCTGCCTTCTCACC
ACCTTGTGGATCAGAATCCCTAGGGTGTTTGCCAAGGACTGGAGAACCACTATCTGAACA
TGTACTAGTGCTTGTTGGAGGTGCTGCTGACATGTTATAACTAGGTCCAAGCCATGGCGC
GCTCCATGCACCATTAGGCCAAGGAGAAACCAATGGCCAAACGGAAGGCGGCATTAGTGG
GAAAGGAATGGGTGGGCCACAGAAACCTGGCATCGGCACCATTGGTGGAAAGTTCCATTG
AATAGTACCTCCATTGCCATTTTCTGAACAATTTGCTGGTTCAGCTGGGACTGGGCATAC
TTGTGCTGCCATGGCAGGAACACCATTCCATGCTGGATTCCATGGGTACACAAAAGGAGG
GCCGGGAAAGCATGGTATAGGAGGCATGGGAGTGACGCCATTGCAATCCCCAGCAATTCC
ATTTTGTTGTACACCAGCTGTTACTTTAACTGACTCGGTCCGTGGATTATCTGAAGTTGT
TGCTGAAGGTGGACATGTCTGGTTCTCACCATTTCTGGGATGTGCTGTTGAGGCAAGGTT
GCTGTTCTTATTCTGCTCTTCAACTCTCAACAAAGAAGCCATGGAGTTAGATAGAGTGGA
ATCAGACCCAAACTTAACTGCTGGTTGATTTTCCTTTATAGGCAATGGAATTCCAGGAGG
TGCTAGACTGCTTCCTGGAATAAATATACCGTGGCAGTTTGTACTGGAGCTCTTACTCTT
GCGCCTACCAGCACCGACAGGGAGGTTTCTCATGCTTCCACCTGCCGTCCAATACCTTTG
ACAACCCCTACAAAAATGCCTTGGTTGGTGGATGTTGTAATTGTTGTAGTAACAGAACTT
TGTATCCATGCTGTTACACCGAGGACATGGCAGAATCTTATCTGGCTTCTTTAGGACCTT
CTCTTTGCTTGATCCGTCGCCCTCGGTCTTAGCTGCTTCCAGTCTGGATTCTGGTTCAGT
CATCTCATCACCGTTGGATGTCTGGTTCTCACACGCACTCAAACTATTAAGGCCAGAATT
ATTTGGTTGACTAAGATTTAAGTCATGTGGTGTGCATGACTTTTCCTCAGTGATCCTTGT
GTCTCCTGTATCTTTGCATGAATTCTCCTGATGATTAGATAAAGAGCAAGTTAAACAGGA
TGAATGGCGAAGTAACAAGTATGTTTATGATAGGACAGTAGCACAAACAATAACATATAC
AAATCCAAGTACCAAGCCTTGAACAAATTAATTATATCTAGGTCATGCACAAAAATGGTA
TTTGCTGAAATAACACACAGCTATAACACCATTTGAGCAATGAATATCTATCTTCAATGC
TTTGTTATATATGCAAAAAAAAAATGGCAACTAGGAAAACCTTCTTTGTGTAAAAAGACA
TACTAATGTCTAAATAGTATCAGAAAACCAATTAGTTTGCTTCCAATGGAATATGGTTGA
TTTGACTGGGAAACATGACTTATTCCATTCTTGAATCTGGATGAGGGCTATTGTTTTTCT
TGCACCCAACATATATTTCTATTGGCATCACTGACAGAGTTTTCTCATGAGTACACTAGC
AAGGTTTAGTACTTTTATATTGCAGAGAGCTTAAAAAGTATTGTTACCAGGAATAGCATG
ATGTATGCCATGGTCAAACTCCGGTCTGTGGTTCGAACTTTCAGATGTAAATTAAAAATT
TCATAACATTTTAGGAAATTTGAGACTAAGCACAGTGGGCACAAGTGAGTCCAACCGTCG
TCAATCATAGTATGAATCTACCGTCGTCAATCATTACTATGAATCTATGATTGCTGCTGC
GGACCAATCTAAGATTCCACGACAGTTAAGCTCTATATATAGGATCAAAATTTCAGACTA
GAAAGGTAACTGTGCATCTATGTCACAGTTGGTGCACAAATCCAGTAGAGCCAAGGTAGG
AAATTTGATATGAATTTCCATCTACCAAATCCAAAGTACTCATCGCACCCTAAAAGTGAA
TTTGTCAAAGTACAGATGGTAACTAAAGTGTGATTCGCATCAAAACAGGCAAACTTTATG
AGGAGTGAGGAGTTTCCATTTAGATAGAGTCCAAGACTAGCTAGTCCAGAGCTGCTTTAA
AATAGCCTGACGTACAAGAACTTGTAACCGCATCAAAATCTGCTCAACTAGATAAGATCG
GAGAATTGGCCTATTCCTGTATCTGTATGTACCCACCCAAAATTCATGTGCAGATACAGT
CAACGGACGCATCACACAGCCATCCTGCAATTACTAGCCCATAAATGATACTTTGAACTG
CAACACCAGCTACAAATCGAAAAGCTTGACATGGTCCCTATCTAACTAACTAACCTAACC
TAATCAATCGTCCCAGAAGAAGCAAAATTAGCAGGGATTCGACTGGGACAACTGCCTGGA
TAGGATCCAGCACATGAGTAGATTACCAATCAGCTGCTACGCCGAAAAGATTTATGCCTT
TATCTTGCAGCACTAATTGGAGAATCCGTAACCAGCTGACATGAACTGATTGAAGCAACC
ACAGAGACGCAGCTCCTAAGAGCTTTTCCAATTGCCCACACGGGAGAGGAAACAGGGGAA
GCATACTTGAACCGTGCGAAACCGCGCCATTTCCTCGAACCAAATCGCAGGAGGTTGAAG
AAACAAACAGGGCGTTTGGCGAACTGAAGAGGGGGAGGAGAAGAGAAGGGAGTAGATTCT
GAGGAGGGGGGGGTGGGAGCTCCCGTGACTTCACCTCTGCCGGCGCCTGCGGAGGCGTAC
GGGGCGGCGCCACGTCGGGCTCCGGCGGCTGAGGGCGCGCGGCTCCGGCGAGCTCCATAT
GGGGGCAAGATCCGACAAGTGGAGTTGGCGACTCGGCTACAGAGGGGGAAAAGATTTGCT
CCCATTTTAGCCTCGCGTCCGTCCGTGCGGCCAAGCCACTGCACCTTTTGGGGAATTGCG
TTGTGGTCCTTGCTGCTAAGTGGGCCGGATCCCATTTAGCAATGCGGTTTTCGCAGCGTA
AACCTGTTCGTGGTTACGAGATAGTTAGGGGGTTTGTTTAGCAAAGGGGCACGGGTGGCT
TGCCTCACCGGGAGAGGCCGGTGGCCGGCGACTAGCGCGGCCGGTCCGGGCCCCAGTCAG
CGCGTGGGGAGCGATCCTTGGCCACGAATGGCCGCGGCCCCACCGCTCGGTGGGCCCCGC
GTCGCGCCACGTCATTCCGCCCTCGCTGTCAATCTGAGTGTGCGGTGGGCAAAACAGCCC
GGGCGCTCGTGCCCGAAAAAGCCGTTGCTGTTGCGCACCTACACCTCACGGAGTAGCGTG
TGAGGCTGTTTATGTGGGTCCGGCAGTGCCTTGGGCCCGCTGTCGGCGAGAGCGTGGGTG
TTCTTCGGGGAGAAACAATGTAATAATAAATTAAAAAATGGAGGCCGGCGGGAGAAGCTT
TGGCCTTTTGAGTAGTGCCTTTTTTGGAGCAACAACACGTGGACCTCACTCTTCCGTGGT
AAATAATTTGTTCTGTTAGAGCGAATCTTTGGTCATGCAAAAACTTTATCCATCCAGAAT
TTCTTTTCAAATAAATTATTTTATTATTTATAAATATAGCAGGAGGCTGGAAATTATTAT
GAAGGCCAACACATTTCCAGCTTGACCGGCTGGACACTGGCCTTTGTTGATCCATGAAAA
ATACATTTGGGACCTTTTTGGGCACGAGGAGGTGCGTATGCGTCTGTATCCACACATCCG
CCCTGGCATGCTAGCAGCCACATGATTAAAATCTTTTCCTGTGCTCTCAGTACCTTAGGC
AATATTATACACAGGGATGGCGCCATTTTTCAACCTGCAACTTGCACGATGGTGTATACT
AATCACATGGGCCGCATGTTGTTGCTCCCTCTCCATCCTTGGATGCCTAAAGAACCGATG
CAGTGGCCACTTGAAAACGATGGCTCTATTTTCATTTTTTTTTCCTTTTTGGAAGCAAGA
CACCTCGCGGTCTTGCGTCATTCAGAGTTTTCGGTGCACTATTGTCTGTGCATGATGGTC
TTGTTTCCCATAAACCAGGTTCGATCGTGTACTGGATGCATTGAGGAGGCCGCAAAAATG
AAGGAAATTCGAGCTGGGAAGGACACTGGTGGAGGGGAAAAGGGCAAAGAAGAAAACAGC
ACGACCACAAACTTGATGAGGACATTAATGCCATTGTTACACTCAGAGCCTTAGTTGCTA
TACATACCGGACCAGTTACTAGAGCTCGCGCACGTTAATTGAATTACCAGGTACTTTCAT
TTCTTAGAAATCCTTTTAATGTTCATGAACATATGATGTTGNNNAAGTTAGATACTTTTG
TTGTACTTATAAATGAAAGACCTAGCATGGATAAGAAGGATATCCATTGGAGCGAGATAA
GGTGCACGCGCTGGAAAGAACAATGGAGTTTACAATGGTGATTTTCGCACTTTGAAGCCA
CCGTAAGGAGAGCATGAAGTCTTGGACGAAATATTCAAGACGCCACTTTATAAATTTCGT
CCATAAGCTATTACAGGTGGTGCGCCACCTTATTTTTGGGCCAGACCCATGTAATTTCGA
AATACCATATTATAGACTCTTTTTTGAGTTTGTATGTGTGGGGAAACCGAGTTTAGGATC
GTTTTCGGACCCCTCCTCCAAGGGTCACAAAAATCCCTCTCTGTTCCGTCATCTATACAG
CCCTTAGGGCACCGTTTAGACTTGAGTTTTGTTTAGATTACAAG