morexGenes - Barley RNA-seq Database

Contig contig_158435
Source Contig contig_158435
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_158435 (8336 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_158435

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19301	1	1422 bp	MLOC_19301.1	Available	Available	LOC_Os02g08480.1, FRAME:-3, EVALUE:2e-179, 13102.m00981 protein ubiquitin fusion degradation protein, putative, expressed
CDS Structure of MLOC_19301

Contig Sequence (8336 bp)

>contig_158435 8336 assembly3_WGSMorex_rbca.fasta
CTAAAGACTCTGGCGTTTCGCTCCTTTCATATTTCCCAGGAGACCAGCATCATCACCGAG
GCAGTGGCCTTTTTTATTTGACCTCCAGCCTCCACTGAACGGAGCCATCAGTCGTGGACG
GAGTTTTCATGCTGCCAAGTCATCGGCGAGTGGTTGTGCATGCCAAGCCATGCTGCCAAG
TCATCGGCGAGTGGCTGTGCATGCCAAGCCAAATGACAATCTCGTTTCAAACTCAGGCGG
TGAATCGACATTGGAAGAGGAGGTGAGCGGCAGTCTTCGGGGCCTGCTTGCATAACTGGC
ATAGCCCACAATTTGGCCACCCTTTCCGTTGCAACCGATCTGCTGTCCACACACGATTTT
GTAGGATTAACCACGCAAAAAATGTGCACTTCGGCGGCGCCCACGTCTTCCAGTTAACAG
CAGAGGTTGCACTTAGAATCAACCCCGAAAATTGAGCCATGTATGCCGTGGAGGCTGAAT
AATTCCCACTGGTTGTGAACTTCCACGAAATCATGTTCTTCCTATCAAGGTGGAGAGTGA
CACCATCCATCATCTCCCAGAGAGTGGCAAATTCCTGGATATGTGTTTCTTTTGTTGCAA
ACAAGCAAGGAATTGATCCATGAGTGATAAAGGAATGTTATTATTTCTCCCGTGGAATCA
AAACCAGTGCGGGTGGAGGTTGTTACCCTGCTCATCAGAGCAGAAGAACTGATCCATGGG
CTTTGAAACTGTGACGTAGTATTCGAGTACTACGCGGTTCATGTAGCAACATTTGTAAAG
TCCTACATGCATATTGGAAAAGTTGTGGCTACACCTAGGAACACTTCACCCAGTCACCAA
CAACATTTGGTCATAAACAAAGCCCCAAAGTTCCAACATGTGGTTGGCCTGCTGGGTGTA
GAACAACCACACTGAGATTGTGTGACTAAATGGAAGGACAGAATCATTAATCTGAACTTT
CACACCATTTGCATGGCTATAACACCAGATCTCCATGGCCACAAAGTGAAACTACATGCC
ATGGACATATAAATACAACGCTTTGTGACTACAACGGCGATAAAGATGTTCGTGAATGTT
AGCTTTTCTAAACTATCTCTATCTTCTGTATAATTTGGTACGTCATTCATGTACTCTCGA
GACAAAAGAAAACTAGTGAGATCCACGGATAACTTTTCAGTCACATTTTTGTATTTTAAT
TTGTTTCTCTGGCCAACAGTTGAAAGTGGGTTGATTGGGCTACTGAAAAGTGGCTGGGAT
GGTAGAGGAAACTGATACGAACATAGCAGAGATTTGGCGACACACTTCTTTCTCCTGTTA
CAAACTAGCAAGGAACTGATCCATGAGTGATCATGGAATGTTATTATTCCTCTATCCGTG
GAATCAAAACCAGTGCGGGTCTGGAGGCTGTTCCCCTGCTCATCGGAGCAAAAGAATGCA
ACTCACTGGCTCGGTTACCAGGAGAAACATTTGTACAGGTTTTGACCTCTGGTCTTACAG
AGGCATCTGATAAAGTAGCTGCCACTTCTTCGTTAGACTACCTATCCTGACGCTTTGTAA
GCTCATTTGGTTGCCTCGAATAAAATGATTCATGACCTCAGAGTAAAACTGCTCGTGTTA
TGGGCGTATAAATACAACACTTTTGTGACTGGTCGTGAGATGTATGAATAAGTTTCATGT
AGTGGCCTGCGTGTGAGATTTATGGTTTCTATGTTTTTTGTATCTTTGGCCTTTAGCTTG
CTTTTTTTGAAGTAATCCGCCATCTGCAAACCGAAGCATTGGCTGTGATGTTAGCGGAAC
TGAGGTAAACACACCAGTGGTGCAGCAGGAGCCCTTCTTTTGCGGTCACGAGGAAGAATC
AAAGTGATTAAGGTTTAGTTTGCCATCGGTTAGAAACGAAAACAGAGCACGGCTATGATT
AGGGTGCAGCTGCTCGATGTTTTCACAGTGTTGCTTCATGTCACAAATAATTCGAGCAAC
TCGCACACACTCCCTTGCCTAAAAAAACCAAAACACCAACCACTGGAGTGATTTACTCCC
TCCAAAAGAAAACTATAGATGGATCACAGGGAGTATTAGATTTGTTACTAAAATATCGGC
ATCGAAGCATAGTGTTTCGGAGTTGGCCTTTTTGGCTTCGTTGGATACCGTCTCTATTCT
ATATATCTACCTAATTTTTAATTGTCATGCGTAGATGAGATCTTCAATCTACCGTGTGCC
TTTTAGAGGTGATCAACAATATCAATAAAGGAGGTGCACCTATCTATGGACCAGTTCTGC
ATTAGATTAAGGATAGTATGAATGATATGGATGCTGATAGTTTCCGTTTCAAGCATTGGG
ACTCGACTTTGAAGCTCATGCTCTTGTTAGAGCTGCTTCTTCTCTAGCAGTTGGGCGCCA
CTTAACGTTAGGGCGTTAGGGGTAGTACCTGATATCATATGTATTCCACATGTTTTAAGT
CTTGAATAAAATGCCTTTTGCCCATCGTTTCAAAATAAGTGATTCAAAAACGACTTAACT
TTGTACTATTTTAGTATAAAATTGAGTCATTTTTGAGTCACTTATTTTAAGACGGAAGGA
GTACTATCGTGTGACTTTGGCTCCAGTAGAAGCAACATTGGTTTTTTTTTCTGGATTATG
TACTTCTCCCACTTTAGAGTTAATTAACAAGCAAAAGCATTGTAACTGCCACTCGAATAC
ATGTCGACTAGAGCTCTTCACCTTTAAAAGAAAGTAAAGAGCTCTTTCCTTCAAACAATA
GAAGCATGATCAACTAGGAACGTGACGGTGCGTCGACAGAGAGCTATTATACGTGCTGGT
CAAAGCCATTAAAACTGCCCTTGAAGTCCAAACCAATAGCGCAGACAAACGCAAAATGTG
TAGGAACTCACTAAAAATCCATGACCAGACATTAAAATACTTTTTACAAATCAGTCAAAC
TGACCCACGGTGGCTGACATAAGGATCAGTTGACAGGAAAGAAGCATTGATACTCCACCA
AAAGATGCCCCAGCTCCCAAAAGGGATCAGGAAACTAAACAATAGCTGACTGAACTCTTC
TCCCTGATGATGTTTGTGATAGGAAGTGCTGATAAGTGATAAATACATACTCTGGACATT
CAGCCCTTCAAGGAGTACTTCTTTCCCGTGAATGCTGAAAATTTCGGCTCCTCTTTCTTC
GGGTCCTCCTTTGCATCCTTTTCGGGTACCTAGCATTGATGCACAAAATGTTAAGATGAC
GCTAGCGTTCAAAGCTGGAGGCCTGGAAAAGGCAGTTTTCCATGCATCTCAAATGCCAGA
GAATGCCACGGTTACTCATTGAGTTTTCAAGATGGCCATCACAAGATACATGTTACAAAA
TACCAACCTTTTCTGTTCCTTTTGATGACTGGCTTCCGCCAGAGCCAAAGACAAGTTTTC
CCGTGGTTTTACGAGGCGCGGTGCTCTGTGAGGTGGAGGCTGCTGATGGCTGAACACTGT
TGGTTGCATTAGCTTGTCGCTTTGCAGGCGAAGAGGATGACGCATCCAGATCTTTAGCAG
GCTTGCCATCCAGGCGCCTACCAGGACCAGTGAAGGGGCTGAACTTAGGTTCCTCCTCAA
CTTGAGCCTCTGCAACAGGAACATACTGGTCCTTAGTGATGAACGTTAAAAGGATTTGAT
GCATTCCACCAAAAGTTACTAATTAAGAACAAAGCAAGAAAGCTACCTGCAGCAGGATCA
GCGCTCGGAGGAGCAGTAGGTTTTGGCCGCTCAGGTTCTTTATAGTCAAGTGGTGGGGCG
AAGTCAACCTCACAATCAGTCTCAATTATACTTATAGCACTGGAAGGCTTTGTTTCAACT
ATATCAATGTAGTACTTCTTGTTATTATATGCCACCATAATGCTGTCACCAGTGGTTAGA
CAAGAGTAGTTCCGCAAAGTTTTTTCCAAGCTGCAACAATGACATGAACAGGAAATTAGT
ATTCTTCAGATCTCACTACTCATACCAGGAAACTCCAATGAAGGTGCAACAGACAACAGG
CATAGCAAAATAAGGCAAAGAAGTTCCCAAGGGAAAAAAAGTAGTTTTATCAGAACAATA
CTAACATCGCTTTGGGATTTGAAATGTCCAAGAAGTCAGTTGTATGAGGCTGCAGCTTCA
CATATGTGCCCTTTGGGAGGTTGGCATTTTTTATAAACACCATATCTCCTTCTTGCAAAA
GAAGATTTTGCATCATCTGATGAGTACATGGGAGTTAGTTTGATTGACATGATGGTATCA
CATAGAAATAAGCATGAAAATATCTTAAACCTGGGCCTACCCAGTATGGCATGTAGATCA
TGCCTTCTTCTGCAATGAACTCTAGGACACCACAGTGTGAAGTACGTTCTGCTCCTGTGT
TGCGGACTTCAAATAGCATAGGATACTCAATATGCAGAGACGCTGCAGAGGAATTAACAC
ATTTGAGAATTTAGTTCGAAATGGTGCACAGAATAGTCGCAGAGAGAAAGTACACTATCA
ACATATGCATGTCTCTTACTAACACTGCCAACTTACCAAGACGATCAAGTGCCGAAGGTG
GCATGATAACTGAAAGGAAGAAAGGTAATTATCATTTCAACTGCCAAAAGTAACTTAAAG
ACGCAAGGAAATTAGTGAAGAGAGAGCATACTTTTGTCACCAGATTCAAGCTGTGGCTGC
AAGAAAGGGTGCAAAAGATCTTTCAGATAAATTCATGGAAATAATACTTTACTTTGAGGA
GTAATAATTCTGCTAGATTCTTCTATACATTAATAATTCCGCTAGATTCTTCTATATATT
AATGATGCAAGACCGCAAGAGTGAATGGAAACATGCTGCCAGGCAGCACATATTTAGTTA
CTGAGAAATCACTTTCTTAATTATCTCAACCTATAAATCATGTCAACAAAGAAACTATAA
ATCATGTTAACTAGGAACAGAAAGGGTCATAACCAGACGATCAAGATTAAAAGCTGAAAA
TCAAACACAGTTGAGAGGGAGAACAAAGAACATGTAGAAATACAATTTCTATCCTTAACC
AGACAGAAGCAATACCACTAGAACATAGACAAGAGATCAGATTAATACTTCAGAGAAAAT
ACCGATCTGACATGATTCATGGAACTATGGAAGTGGGTAATGCATGAAGACTCATGCATC
AACACTGAGCAAAGTTTGCTTGTGTTGGTACTGACTTGAACTAGAAAATAAAGATCAATA
TCAAAAGGATTGCAACTCCAAATTTACAATGCATCCATTATCGTTTTTACTTGTTAGATT
GCTTGCAACATTTTATAACATTGATTACACATACGTATGAAAAGTATTCGAATTTTTCAC
ATTAAATTACACTTCTATATCACCATATTTTATATTTCAAAAATAATTATCAAATGGGTA
CATGGCACCTAATGAAAAGAAGATTCACATACCTTGTCAATAAAAGATGCAGGGTAGCAG
CGATAGGTCTGCTCAAAAGTACTTCCACGGTAACCGTAGCCTTCAAAATACTAATCAAAA
CAAATAATTGTATTAGAATCATGCAACATGATTCAGCAATTGATGAAGCTATAGGGAATT
ACTGGGAAACTATTCATGGCAAAAAGGTGCTGCTATGTCCAAAAATGTAACTGATTATCA
AATGCATAGCAAAGATGCAAACTGATAACGAAGGGATATACTAGCTCACAAATCCAGAAG
ATATCCAAGGTTTGAGAATAACAGCACATGTGGTACACAGATGATTTGGATCTTAATCAA
GTGCTACCAGACTAATTGAAGCTATGGCTAGTCGCTGACAAGTTCAATTAAGGAGTTTAT
AGGTCTGAATTTCGATGATGTGCTCCTGAAGGTAACATAGTTCCAAACAGCTAATAGTAA
GATCAAATTTGTCCAAAGGACTTACCATATTCATGGACAGGAAGGTTAACCCCTTTTGAA
CCTGCATATGAGGAACAGGAACATATAATTAAAACGATGGTGAACATAAGCAGATAATAC
AACAACACAGTCACGCATAATAACAACTGGAAAAATGAAGATTCCACTCACACAGTGTTT
ATTTGTGATAATATGAAGACACAAGACCTATTCAACCTATTCAAAATTGCTGATACACAT
TTGCAGACATTCATTGTTGATAAGCTGTAGTAGCTTCTCGGGGCCAGCAAAGAGGACTAT
AATATGGTGCAGTCAAGTTAATCAATCTAAGCCAACCAAACAAATCTTCAGGGGACAAAG
CCACAATCAGGCTCCAAAGTCTAAACAATCAATTTCTACATGCTATTAGATTTATAGATC
CTACTATGAGTGAATAGGTTCTCTAGTTCCACAAATCCCAAGGGTTATTGACTTGCTGGA
GGATAACCGGGGTAGCGCTACCAACAAAATTCTTCCAGGACATAAAAAGTCCACAGAGTC
AAGTAAATTACTACTCCGTAGCACAATATATACTTCAAATAAATTAGCAAAATACTAGCG
CGAGAGGTTGCTCGTCGTCAAAACGCATGAGAGAAAGAAAAGGCTTCGTTTTTTCCAAAC
TTGAGGGACGAACTGGCAGCAGGCAAGGGTATGCGCCAAGTACGGATGTATCCGCTTAGT
ATATCGGATTGGATTGACGATCTGGGCATCGCATCGAAGCACGGACGGGCTCGGGACCGA
AATCGGGTGGAGGTACCGGAGAGATTGATCGGTGCCGGCGAAGGGTAAAAAGAGGCGGAG
AAGCTGAGTCGAGGGTTACTGGTAAATACCTAAGCACCGGTTCTCCGGTCGGCCGAAGAG
GAGGCGGCGGCGGCGGCGGTGCGGAGAAGAGTCGTCCTCGGTTTCGGCGGTTGCGCTCGA
GCTCAAGCGGACGGAGGTAGGTTGGCTTCGATCGGAAGGAAGAAATGAGGAGAAGAATAT
AGGGGATGAGGAGGAAGAGGAACCGAGCTCCTAGTTGGGCTAGGCTTCCGACGTGTGGCC
CAAGTGAAATACTGCCTCAGGCTCGGCTCAAGGCCTGATCACAGCCGAAGCCCAATAAGG
TCACACATTTTATTTTCTAAGAAAAAAACAAATTCGGAAGTATGTTTTGAAATATTGCTA
ACATAATTTAAATATTTAAAATGTTCTATATTGCAAAAAAAAGGGAAAACATGTTCAAGT
ATCTCAATGTAAACATGCCTATGTACGGACTAGAAATAACCATCTCATATTTTCTTAAAT
GTATTTATTTATAAAGATGTATTAGTGTAGTTTTAGAAAGATGCTCACATATGTACATGT
AAGTGTTTGAACACATTCACATATTCGAAAAAAAAAATTCATAGATGTAAGAGCATCTCC
AGCCATTCCCCCCCCCCACCACAGGTTTGAAATAGCACCGCCTCAGGGCGCGCCAGCGGA
AAAATCACCCGGGGGGGCTGAGGTTCCCACCCGCACCCCCCAAGGTCGCCCCCAATCGGG
TTTTTTTTTAATCAAACTTGGCCTAAATTCGACCTAAAATGACACAAATTTGAAGGAAAT
GCACCGTTTTCATTGATATTTTTACAAACTGAACTAAAAACATAATTTAAAATGAAATTG
AAAAACTACTAAGCCGTCACTGTCGCCTTCTACATGCCGAGAAGCTTGTAGAAGTCGTCG
TTGTCCTGCACCCCTGCCCTGGGTCGTCGTGGCGAACGGGGTTGGACGGCCATGGTGCCT
CCTCGTCGCTGCCATCGAGGACGATGACGCCACCCTACTCGCGACCGCGACATCGAGCGG
TAATCTCGAGGGCGCGGGGCTGGAGCTCCATGTCCTCCTGGACGTAATCGTCTTGCGCCC
ATTTAAGCGCGATCTCGGCAGCGGCAGCCATGGAGAGGTGTTCCTGCTTAACGGGACGGA
ACACCAGCCCGGTCTTCGCTTTACGAGACGGGGGGAGGAGGTTGGAGGAGAAGAGACGCC
ACCCTCGTTGATGACGAGGGGGCCGCTGCATGTGTGCCGCCCTAGCAGCGTCTCCAGCAG
CTCCAGCTTGATGGGGAGGAGCGTCGGCGACCCAGAGGAGCGGGAGTGGGAGCCGAACGA
GGAGGAGGAAGCCATCTCCGTGCGCCTCGACGTCCAAGAACTGTCGCGGAGGCGGGAGAA
GGAGGGGGGCGCCGGGTATTCCATACGCGGCGAGTTGCTGCCCTTGTGCTCGAAGACGGC
CTTCAACGTGCGGTCGGGGACGCCCCACCATTGGTGTCGCCCCTCGTAGTTGAAGCGGTC
GTGGGGGGTCGGCACCGTTGGTGGCGGCAAGCTGGGCGGCATGACAGTGTACGAAGTACG
CCGTCCATGATGTGTTGTTGTCGGGTGCGTACTGATGACCCACAAGTGTAGGCGAT