morexGenes - Barley RNA-seq Database

Contig contig_1583819

Source Contig contig_1583819

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1583819 (2712 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1583819

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19177	1	143 bp	None	Available	Available	None
MLOC_19176	3	659 bp	AK354382	Available	Available	None

CDS Structure of MLOC_19177

CDS Structure of MLOC_19176

Contig Sequence (2712 bp)

>contig_1583819 2712 assembly3_WGSMorex_rbca.fasta
GAGGACGAAGACGAGGAAGATGATGAATGATGTGTCTTTCATTTATATGTCTTGAACTTG
TTTGCATTTTGAACTTGGTTGGATGAACTTGTGGGCATGAACTTTTATGCATCTCAAGTT
GTTTGTGTCAAATTCACATGTTTGCATTTTAGCGCTGCTGCTGGAGCCAGCGCTGCGCGA
CGCGCCAAACCAGCCGAAGCACGCGCGGCAAATAATTTTTTTGGTCGCGGCGTGAAGCGC
GGCTGTTGGAGATGCTCTTAGTCCTATTTCGTCTATTTCACACACTCTTTGGTATTCTCA
GATGAATTGTAGTGTTTACAGAACGCTGTCCAACAGCAGATTGGTAATTAACTCGTGTAT
CTTGTGGCAGTGTCAATGTTACATCTGGTATAAATGAGGATCGCATGATGATGACAGGGC
TGCATACCGTTTCCGATATCTTCTGTGTTGGTTGCGGGTCCATTGTTGGATGGAAATATG
TAAGATCTTGTTGTGATGGTTATTTTGCAACATCCCGTGCATTGCCTGTCCATCCTCTAA
GCTGTATGGTGCTCCTGCTCTAGGAGGCTGCACATGAGAAGAGCCAGAGGTACAAGGAAG
GGAAGTTTATTCTGGAGAGGTGACCACCTTAGCTATAACATCTTTGTGATGGTGTTGAAA
CAAACGAATTCAGGGACCGGAGTTTCTAATAGAACCTCTTCTTTGTGGCGGATTGAGCAG
GTTTAAGGTGTCGGGCCCCGATGGTAGCCACTACTGGGGGGTCACACATGATGCTCATCA
TGGGGGTGGAAGCGACACCGATGACTTATGAAGCGCGACCGACGTGCGAAAACCTGCTGT
TCATCTCTGTAAATAACCCTGGAGTCGGGCCTTAGTTACTCCGGGGGGCTCGCTTCCATT
CAAAAGCGTCCCTCCGGCGTAAAATTGTTAATTCTAGGTGATATTCTCCCAGCAAGCTGT
CTGGGAGACCTAATACCTTCTGTATATGAACGAATGTATCATGTAGCCCCTAAAAGCTGT
TTGTTATGGTTGCTGGAATGCCAATAAATTCTGTGTCTGAAGTGATCTAGCATACCAGGT
GGTTCAACTGTTTGTTGCATTCTTTTCGTCGAAAGGGAATGATAGTTTCGCCTTTTTTTT
GTTTACTTACCACTACAGCCCCTGCTTAATTTCTCCTCCTTTTCCCTTTTTCTTTTGCTG
CCTGCTACGTTTGGTTGGGTTGGGTTTGGTTTAGTTTAGTTTTATTTGTTTTGTTTTCTG
CTCTGCTGTATCGAAAACTATCTGAATGGTTGTCAGGCCTTGTTTTGTTTTGCTGCATGC
TCCTGTCTTGGACTCGGTCATTTTAGTGGTTATTATTCCTCTTGAGTTATTTGCCACCTG
CTTAGTTATTATTCTGCCCTTGTTTATTTGACTTAGTTATTGCGGCCCGCCTTTAGTGTT
ACTATGTCGTTCTTAGAAGAATCTCGCCTGTTACTATGTTATTCTTAGAAGAATTTCGTT
TGTTTGAATTCGGAGTTGGCCAAGGCAATCCCGTGTGAAGTAATAGCAAAGCTGAAGCGG
GTGCCTTACAGTGGTTGTTTGAACTGAAGACATTCCGTCAAGGAAACAAAAGGTTTGCCT
TCAGCCTGATCCCTTGTTTATTTTTTTATTTTTTGATAGTATTTTGGCTTGATCGAGTGG
TTCTCATTGAGTGTTTGGCGATGCATCCATGATACGCCTTGGCGATCTGGTCCAAATAAA
CAGGCCGTGCCATCCGCACGTACCCGTGTCTACATCAGGGATGGACACAATAATGCCCTG
ACGGGGGGCGCCGTGTCCCTGCCCAACCCGCCGCACACATGTCAACACCATCCCGTGCGT
GCGTGTCCACTCTCCTCCACACTGACCTACGCTACGCTACATCGGATTATTGAGTGGGAT
TTTGTATGCATCCCTCCGAAAGCAACGGGGAACGCTTGAGCATACGGCAACGTGGTGGGG
GCTTTGCTCCCGTCCACCATCTAACCAAGATTTCGTCCCGGGCATGCGCCCATGCACGTT
CATATACAAAATGCAAATTTAGGTAGGATAGAACTATAGCGGGATTGGGTAGGATGGGAT
TATAGCAGAATGCATGCGTGCGCAGTAAACAAGATTATCCGGCCACGCATGTGTTGACAC
CAGTTTTTTTGACACGCCGGAAAACGTATTTAAGATGACCTCCAATGAAAGGAACTGTTT
TCAATATAGTATGAAGTTTCCGTAAAATCGAAATGAATAACTTTGATGCTTGGGTCGTCT
TCGTCCGAGGTCGTATGCAACCTCGAGAGCCAAAACATTGTCTTGCCGCGTTTTGCACCG
GAATATATTTTATCGTTTTACGGGCCAATTTGCTTCTCCAAGATGACCTCGGGTGGTGAA
GTGCCCAACAGGACTTTTGTTCGTCTCTTCGAGCTAAACAAAATTTATTCAACATACAAC
TTGCACGAGGCTTCAAAGAAGATTACTTTATATATTTTGAGCCTCAAAGTTCAAAACTTG
TCGGGAGGTTTCGGGAAACACATAAAGTTTGTGCGCGGTGCGCCCGAAAACTGAAGTTTC
ATCTTTATTTATAGATTTTGGAGCCGAATTCAACCTCAAGACAACTTCGGATGGAAAAGA
ACATAACCGAAAACTAAAGTTTCAACTTTATTTATAGATTTTGGAGCCGAATTCAACCTC
AAGACAACTTCG