morexGenes - Barley RNA-seq Database

Contig contig_158380
Source Contig contig_158380
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_158380 (9677 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_158380

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19173	1	418 bp	None	Available	Available	None
MLOC_19172	5	2278 bp	MLOC_19172.2	Available	Available	LOC_Os06g36700.1, FRAME:-3, EVALUE:3e-161, 13106.m03797 protein T-complex protein, putative, expressed
CDS Structure of MLOC_19173

CDS Structure of MLOC_19172

Contig Sequence (9677 bp)

>contig_158380 9677 assembly3_WGSMorex_rbca.fasta
AATGCCAAACAAGTTGATACGCAGGCATATATGGTATAAAGACCCAAGGTGGTACGCACA
CCCAGGACCCTCTTTATCCGGAGGGGCATCGGAAGAGGATTGAGCAAGAAATATTGTCTA
GTTTGCACAGTAACGCAAGAAATATTGTCTAGTTAACATAAATATTCAGTTCACTAGACC
AACTAGCACAGTTCTAGATGTATATTCTGTGAATATTGTAGGAAATAACTTTTCATGGCC
TTTTACATGGAGCGCTTACTGCACGAGTACACCTGAGCGGCTAGGCCAAGTGAACCCCAC
CAAGTGGACAACCTATTATCATGTATTTTCATATTTCTGCATATTTCCCCTGTGGCAGAA
CAGATTAAATGAAATTAATACACTGATGAATAAATAAATAATGGTACTAGAAGGCACTCA
GACTAAAGCACTAAGCATTGGAAAATACAGTTTGAGAACGGGGAAACCAAGGTCTTCAGC
AAGCGTCACAAGCAAAATACAGGCCTAAGGTACAAGCAAGTGGCCAATCCAACTGCTTCA
GCAATGCTGCATGGTACAATGATGGCTTGTTATCCAACACGGTTGCCCATGCTTGCAACA
TCATCACTGTTCAGAACTCTGACAGCATGATAACGTCGTCGATCTTGAGAATCATCTTCA
CAACCTGCGTCGCCAACAATATCTGTTGTTGCTTGCCAATCAGAGTCTCAAAGACGTTCT
GTACTCTCATATCGTTGGACCCGACATCATTGCAGTCGATGCCACAGTAGGGATTGGTCT
CCTGCAGAGGTGGTCACTGGTCAGAATCACATGCGTGATGTGTGTTACGCAAATGCGAAA
TGAGACATCCAAACCAGCTTTTAATCACAGCATAAAATATGCTGCATTGACGGCATCAGG
CAGTAAATGGTAGGATTGTGCAAAGCACATAATGTATTGGGTTGCCTTAGCCCTTCAGTG
ATATTACGAGGCAAACTATATTACAAGCACAAAAACACTAGGATCTGTACACACATCCGA
CTCAAAGTACAAGGCTGAGTGACAAAACAATGAATCAACAACAACATATTAGACGAGCGG
ACTGGGGGCATAAGACAACAGAACCATACATTACCTGAATTTGCTGAGATTTTACTGCAG
TCAACGTATCAATAGGTGGCAAACCACTGTTTTCAGCCAAGGCTAGTGGAATCCCATCCA
ACACATCAGCAAACGACCTGATTGCATACTGCAAGTACAAAGAACACGATTAAACGATAT
TGCATCTTGTTGCAACTTAGCTGTTGAAACTCAGCAGTTACCTGCTCGGCTCCAGCATAT
CGATCTGCAGCAGCTTCAACAGCAATTGAGCAAGATATCTCAGCTGAGCCGCCACCATAA
ACAATAGAGTTATTGTGGATCAGATTTCTAGCCACACAGAGAGTGTCGTGAATACTTCTC
TTGGCCTCCTCAATTATCATTTTGTTGCCTGCATGGTAGCAGCTGGCTTTATCATGGAAA
CTCCAAACGTAATTAATCTTTTAGCTAGTGCGCATATTCAATAAATACTAGCGGTATCAG
GCAATGATTTTCTACTTAGCATAGTTGGTTGGGTAGCTACAATAGAAGTATGAGGTCTTA
CAATTCTTCAATAGAATTATCTTTTAGAATCCTACAATTCTTCAAGGAAAAGTAACACAC
AACCCACTGGTGCGTCATACAATCGCGAAGATATGAACGGTATGAATATTTTGTACCCAT
TCTACAAATCCAACTGGTTATGTATGACGAGGTACTCTCAAACTATTATCTGAGATAATG
TAACCAACACAACGATGGGTCATAGGACCAGGGACTCACAAATTATGACCTAATTAAAAA
CCAATAGTATCATAAAAATTGTATTCATAGAATGGAGAAGTGAATGTTACAAAGAAATTT
CTCATGTATTTCAGTGCACAATTCGCATGCATGCAAGATTAATAACTAAAATTATGCAAG
TTTATTAAATTCGACAATTGAGTGCCAAACAGTGAAACTGTCATGTATCGATACTGCCAA
CACTGGTAAAATTGTTTGCACTGCATGCAACACAAAAGTATCTCAACTATATGGACAAAT
TGACCACTGATGGGTTGAAAGTATAAGCACACATGACCTAACAAAGGATGTGGGGATATG
CACATGCAAACATGAAGGAAGAGATATTATCCATTGGAACATACCGCCCCGGATGAAGAT
AGTTACAGCTCTGGAATTTGCACACCTCTCAATGTAAAGCATTCGGTCCTTTGTTGTTCC
AAATGACTTCTCTCTAACTAATCCAGCCTGTTCAAGCAAAGTATATGCAGATAAGCAAAC
CCTGTGAGATACAAGCAGTACAATACAAAGGAATCTAAACAAAGCAAGTCATTAAAACAT
AGCATAATTATATTACATTTACTTTAAAGAATGTATTACTTTTGCATGGTATCTTGATGG
CAAACGTCCTAATTGCTAGGTGCTGAAGGAAAGCATTGGTTACACCAGAGAGAAGTGGCA
ACCCTACTCAGCTACCAAGAATCACATAAAGATTGACATTGTTGAGCATTCAATTTTTAG
TTTATTGTCCTCAGGTCAATCAAGTCACCCTCACAAACCCACATGCGGCCAATTAAAGTC
AGCGAACATCTTAACAATTACATGATAAAATAGTATCACTTATCTGTTTAACTTCTTAAA
TTGTTTGATACGCTTACTTATTAAGAAATAATACAAAGTACGTAACTACGTATACAAACA
AAAACTCATGCAAATTAATAGCTAGACTCCACATATGCTCTGTCGTCTCAGCTACTTAAG
ATTTCACATACTTGGGGTTCCAAAATTAGACAGCCGACAATACAGCCTATGCATCATCAG
AAAAAAGTATGTGTGTACATCATCAGAAAAATGTATTCCTTGTGTACAAAAAGAACACAA
AACCAGTTGTACCTGCCCAAGCTTATCAGGAGTCAACTCTTGGAATCTTGGAACAATGCG
CCCCCCTGCAGTCAGTTCTCAAATGTTAGATAGTGTATTTATAAGACATTCAGGTTCACA
AGGAGAGGTACTCATATCAACCTGTAGCTATGGCAATCAATTCCAATTCAACACCACCAA
CCCATCTGACAGCAGGCAGGTTTCTTTGCATAAGCAAATGATTGGCTTCATCATCAAAAC
CCCATTGACAGATAACTAAAGTTGCACCAACATCCTGCAAGTGTATATGAATAAAAATCG
TATAAGTATTTAAGAAATCAAACATGATACGATTCAAAGTGAATAGGCTTTGTGCAAAAT
CATAACTTTTCCCTACTATAGATATAAAGAAATTTTGTATGTTTTTACCTTGCATTTCTG
AACCATTTCATCGAAGTATTTCTGCTCTTGCCCACGCAACGTCTGGAATTTTTCTAGTGT
CAATGTCAACCTTATGCTTTGTCTTGGGCTTTGGGGGCTCAAATGGGCAGGTAAGGATGG
CAATATTAGCATCCTCGATTCTCTTTGGCATTTGTGGGTGGCTCATATCTTTGTCAACAG
CAATTCCATATATTAGCTCAGTGTCCTCTAGCTTCCCACCAACTTTACCTTCTACTTTAA
TCAAGTCCAAGTTTACATCCTTCCTTTCCAAATCAGCAACAGCAAGGACTGCCCTGACAG
CAATCTCAGCAAGCAACCGCTTACAACGGTTAACACTGCAGTTTAAGAATGATGGGTCCA
ATCAGACAAACGGATAGAAATATAAACTGAATCTACCCTACTTCCTGGCAGATTAAAACA
TTGGTTGCATAACTGATAAGTTAAGAGTGAATCTCTTATGACTTACATCTTTGAGGACAG
AGTTGTCACGCAGGTCTGCACCAAGGGCTCTATATGTGCAGCAGTGAACTCAAACCTAGT
GGAGATACGTTCAAGGTGATCAAAAGCTATCTTGGAGGCCATCTCATATCCTTCGGCAAT
TCTTATTGGGTGAATACGACGCTCTAGCAGTTTCTCAGCTTGTTCCAGGAGCGACCCGGC
CAGGACCACCAGTCCACCACCCCGGTAGTACCATCCCCAATTTCATAATCTTGACTTCGT
GAAAGCTCCACCATCAGCTTTGCAATCTGGTTATTAACATCGATTTGCTCCAGGATCGTC
GCTCCGTCATTTGCTAGAAAAAATCATAAGGGAGGCAATTATTCAGAAACCCTTTCCCTT
CTTTTGGGAATAAAAATCGAAGCACTTTCCAACGGAACTAACAGCCCTACAGACATCTAC
AGTAGAACTCTGGACAGATACTGCGTAGCACACATCCAAAATCCCTAGCCCTTCGAAGAG
ACCGATGCAAGGGCCAGATCGCATGCAAGCAACGAGTACTAAAGAATCTTAAATTTTCCC
GCGAAATAATAACAATACAGTAACTTAAGCTAGGCAATAAGATTAGGGGGCAGAGCGGGG
AGGGGAGTGAGAGAGTGCGGTGGAGCAGTTACTGATGGTGACGTCGCCGTCGGGTGACTG
GAGAATCTTGTCCATGCCCTTGGGGCCGAGGGAGGTGCGGAGGCTGCGCGCGACGGCCTT
GCCGGCGGCGACGTTGGCCTTGTGCGCGTCGAGCCCCCGCAGGCGGGACTTGCTCTCCTG
CTCCCTCAGGATGACGAAGGGCCGTCCAAAATCGTCGAACGCCAGCGCCATGGCCGCCGC
TGCCGATGCACGGGACGCGCGCGCGGCGCTTCTAGAAGGGTCGGATCGCACCACTGGGGG
AGGAGGAGGCGGCGCGAGGGCGTACCGGCGATCTTTTTTTTGAGACTTAGGAAGAAAAAA
AGAACACCTTCACGAAACATCCAAAAGGACATGGGCTTCATCAATGGATGCGTGGGCCGG
GCTGAATAGATGGGCTGAGTTTATGTTTATCCGACGAAAGAAAAAAAAACTCATAACCGT
GAAGGAGATATGCGCGTCTCCGTCGGAGACCCACATCACCATCCCACGAATCTGTTTGAA
GAACTTTTGAAGCGACCCGTCCACCTGCCCCGTCATCCGCGTGCTTTGTTCCTAAACTAC
CCTTGTACCTTCGCTGCCAAGCACCTACTACACGCTTGCGTGGGAGCTAACGTATGCATG
ATTTATTTTATTTTCGAATTTACATATCTTGCTCGGCAGACCATATATGGAGCGATTTAT
TCTTCAAACTGATCCCGGGTATTGCGTCTACAAAGACAAAAACCTCATTAATCCACAATA
TATAGTTTGACTAAATAATCGACAAAATATGGGAACAGAAGAAGACCACGTGTTGCTCTC
GGGTGAAAACCCTAGTCATCGCTGCCGTCGACACACATCGTCGGGCAAAGCCCGCTGGCG
GTTGGCGGTTGGCGGTTGTGGGATTTGCTTCTCTCGTGCATGTTGCTCTCGGACATAACC
CTCTCGATGGTGGCGTGCAGTGAAGCTGTTTGTCGTAGTGATCGACCTTGGCTCGCGCAA
CAGGCCTGAGATGTTGCTCTCATGAATGTGGAGTGGCTAGGGTAAGCAACGGTGGGACGG
CTTGGCGTGGCCACGTGTGGCACCACCTCCGTTTGATGGGTGATACAGTCCTATACTTCG
TGGTGGATATGGCGCGGCGCGAGCAATGATTCATACTTATGAATTGTGATGGACTTGGGC
TCGGCCCAAATCTGGCGTGGCGATGGCGGTGGGTTGGAGTTGTCGGGGTGGCGGCCCCAG
ACTTGGTGGTAGCAGCTTCGGCCAAGGATTGGTGTGTGTCTCAGTGTGGCAAAACGAGGG
ACCCCACGGATGGATTGGAGTTGGCTTGCGGCATGGTTGTGGTGGTCGGTGGGTTGTGGT
ATGTGATGTGCCGGTGTAGGCAGAAGGTGGTCGAGGCATCTCCAGGAGAAGTCATGTTTC
CATCTCCTTCAAATCTAGCGACAAAGACACCAACAAATGGTGTGGTGTTCTTAGAAGCAT
CGTCGTGGAGCTGTGCTCATCACTCTCCCCACCACCTTGGCTTTGGAGGGAAAACACAAA
TTCGTTGGATCATGTAACGGAGGCGTCTTCATGTCTTTCTCCTCCTTGAGGCATCATCTT
GGAGCCGCCTACGACTAGGAGACCGGTGGTTGGCGGTAGCTTGTCCGACCGGTTGTTGAG
GTCGGGGTGTCAACGCCTATATCAGCAACGATGATGGCGTCAATATGATTTTGGGTCGTG
GCTCGAGATAGGTAGTCGACTTTTTCCGATGCCCAATGTGTTCTTTCAAGGTTTGCTTGT
TTTTTGTGGAGTTGAAGTTGTAGTGAATGTGTTCAGGTGGTGACGATGAGAGACACTTGG
AGGCTATTTGCACTGGACCTGGTGACACAAGGCTTGCATATTTTTCTTGCAAATATCATC
GTCAAAGTCAGAGTTGATGGTCGTTGGCGCGTGGGGCCAACTATTGGCATGTGTTGTCAT
GGACTCCCTGCAGCTATTTCACGCAAGCCTCATTGTTGAAGTTGAAGTCGCTTGTTCCAA
GGCAAAACAATGATGATGGTGACGCTCGTGGGCCCTTAATTGATGTCTTTTATTCTTTGT
AGCTCTATGATCCACGTCGGTGGGTAGGTCGTCCGATGATGCCCATTTTATATGGATTGG
GTTGGGTTGTGTTGGTCTTAGCCTATTTTTCGCAAGTTAATTCAATAACTCTCACTCTCT
TATTAATTAGTGAAAATGACTACTCTGTTACCTCGTTTTGAGAAAAAAGAACCCTCAGTA
CAATAATGCAGTTCAATTATCCGATTTTCTTTTTGTTTTTTGTTTCTTTCGGGGGAGGGG
GTCTTTGTAGAAAACAAGACAAAAATCATTGCCTGCATCTTTTAGGATAGAAAAATCACT
GTTTGAGAAATCAAACAAACGCGAGAAAAACTACAAGTATAACCTTTTTGTATTACTTAA
TTGATAGGAGCATCCCCAATATAGGATGGCGAAATGTGGTAGCGTCCAAAAAATCATTGT
TTATGGCATTTTGGGCAAAAAAACGATGCTCCAACTAATGCCCCTATATGCATATGGTGA
TGAAATTTTTGGCAACCCCAAATTTCAGCCTTCGATGCTTTATATTTGAAGCACCGCTAC
GGGTGCTACAAAATCGAAAACTCGTCTCTCTAATGTCGAAATGTCAGCTGAAGTTACCCC
ACCACATAATCGCATCCTCGTCCACCTATGGTGTCGCCAATTTCAGTCGGTCCCATGCCA
CCATCGGCACCCCGCAAGCCATCTGGCCTCCATGCCGTCGAGAGACACCCCGTTCTCCTC
CTCCCTCTTGCCACATCTCCGTTGTCGCTTGCGATAGTCGTCACCCCCTCGGCGCCCAAA
TATGGATATCTCATCATCACGGGATCCATCGTCCACATCACTCGGTCTGACCATTCCGTC
CTGGGTCGCCCAATTCGTGCATCATCGCCCCTTGATTTGTCTCTCGTTTATTCATCGACC
GCTTCGGTGGTGGACTACGTTGCGTGGAAGATGCCGCCACGAGTGCCACGTCGTACCAAG
GCAATTGGTGATGGCCATCTGGGCACTTTGTCACTGAGATCACCCGTGTGGGGGGTCACA
AGTGGCTCGGCCCCTTCGAGACCCCAGAGCTTGTCATGTGTGTGCGTGTGTCATAGTGGC
GCTCCAGTATGGGCGGAGCCGGTTTGATGCCAACTTACCCTACATGGACAAGGACATGGA
GTTCCTCACCCCTCTCATGCGGACCATGTCTCATAAGGAGGAGAAGGAAAATTGTTGCGT
CGATGCGCAATACACCGCCAAGGCTTGGGTTGTGTTGCACATGGAGAATTTTGCTGAGTC
CAATCAGGACATCGTGGCGGTGCAGCTTGCATTCCACACTGAGAGGGACAAGGATCTAAG
AAAGAAGGGGGACAAGGAGTATGCTCGCGGGATCAACGCCGAGGTTGATGACTTATTCGA
CCAACTCGACAAGGATGGTTAGGAAAAGGATGAGGAGGAGGGGGAGGTGAAGCCGTCTAC
CTACAATAACCATGAGGCAGGGTCGTCCGACGGAAGGGCAATCATAATTGACTCCTACGA
TGACACCTTCCCCATGATGGCCCACTTTAGAAGTGAGGAGAAGGAGTGTGATGATCTATC
ATAGTGTTGTTTAATTATCTAGTCTGATGTTATTTTATGTTTAATGTTGAAAAATTCCTA
TCATAGTTTGAAATTTCAAAATATGCGGTGAATCATGTTAATGTTTAAAAGCTTTAGGGC
ATCGGATTTACATAATCTATTACAACAGGGAATTTCTCGTGCCCAAACACATTTATCTCT
CCTACACTCAAATCAATTTTGAAAATCTACTTTTACATCATCTGTTAAAGATACTCTAAA
AATATATTATAATACCATGTTATACCACTCTCCACCATGGCGAAATTTCCGGACTATTTA
ATACTCCCTCCATTCCTAAATNNNAGTCTTTGTAGAGATTTCACTAATGGATCACATACA
GATGTATATAGACATAATTTAAAGTGTACATTCAATCATTTTTCTTCGTATGTAGACACC
TAATGAAATTGCTTAAAAGACTTATATTTAGGAACAGAGGGAGTAGTCCTGAAGTTCCAC
CATGTTATCTTATTTTTGCAGCAAATGTTGTTTTAAAGGAGAAAAGATAAGAAAATTATA
GGGCGACGCTAGGCCGGCTGGACGATCCCAGCAAGGTTCGGTCCCCTTTCGAACCGTAGT
TTTCCATTCCCTTGGCCACTCGATTTAACACAACACTTATGTATAGGACTCCCCTCAAAA
AAAAAAACTATGTATAGGACGAGAAACAACCCTTGTTTTTCTCGCTCACACGTGCATGGC
ATCCCGTGTCTCCCGCTCACATGGGTAGCGGCCGACATCGTGGTTGGCTCGCTTTTTTAT
ATACTAGTAAATGTGTCCGTGCGTTGCACCGGAAAAAGAAAATCAATGAAAAATAGAAAT
ACCAAATATTATGAAAAGAAAATCAATGAAAAATAGAAATACCAAATGTTATACGCAATG
ACAGATGACACATGTCAAGGGACTTATCTGTGAAGGACCGAGCTAACAACATTCATATAT
TGTTTTAAAGCTTGTGGCTTTCCGTGAATGGCAACACTCATTTAATTCTACACTGTTCAA
TGTAGAAATTTAAAGAACAACATCAAAAATTAACCAAAATGTTACAAAATAATTTAAAAA
TGTAAGGCGTATTATCCATTGTTTAGGTAGGGGGCAAAGGAATTGAGGAGAGAAGGGAAA
AAGGAATTTGTTAATTCAGGTGGGATAGAGCTTCCTCCCAATTCATCAAAAAATAGTTCA
ATTATTATTACAACTCAAACAAATGATTAAACTTCAATACAACAAGTAGTTTATGACCAA
TACAACAAATGTTTAGCACAACAAACATACAACATCATGCATTTTGTCGTCATCCCATGC
CCACCATTCCTCGCCTCGATTTTTCTGAAGTTCGTCATGTGTTTCGGCACGTCGAATGGC
ATGATAGAATGCAACAAAGCGGGCCACCCTCTCGACACTCCTCCGCACTCACACGGGGCG
TCCCAACAACTCATATCGAGAATAGTCCAAATCTTGCCCACGCTCGTTTTCGATGGTCAT
GTTATGCAAGATCACACAAGCGTTCATGATGTACAGAAGGATATTTTGATCCCAACAGTG
GAGGGTTGTTCATCTAT