morexGenes - Barley RNA-seq Database

Contig contig_1583759

Source Contig contig_1583759

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1583759 (1824 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1583759

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19165	1	921 bp	MLOC_19165.1	Available	Available	LOC_Os06g07080.1, FRAME:+3, EVALUE:4e-95, 13106.m00735 protein pre-mRNA-processing-splicing factor 8, putative, expressed

CDS Structure of MLOC_19165

Contig Sequence (1824 bp)

>contig_1583759 1824 assembly3_WGSMorex_rbca.fasta
TTTCACTAGGAGACTACATACAGAGCAAAATGANNNNNNNNNNNNNNTAAAATATGTCTA
TGTACATCCGTGTGTAGTTTATAGTATAATCTCTAAAAGGTCTTATATTTAGGAACGGAG
GGAGTAGCTTTCTTGTGCATTTTGTAATAGTGAGTTTGTTATTGTCCGTGCAAGTTTCAG
TCCTAAATCTTTGGTTCTGTTCTTGGCACGTTCAATAGTATAGTCCTTTTTTGTGTCTGA
TCCAGTCTCTTACTACTGAACTGTATTCTGTTGTTTCTTGCAAATTCTTTAATGGAGAGC
CTCTTTAGCGTATGATTCAGAGTTCAGATACTGAACTGTTCGTTCTGTTGTGTCTTGCAG
GACTTGACATCACATTCCAAGATTTTGGAGAACAACAAGCAGTGGGATGGTGAGAAGTGC
ATCATATTGACATGCAGCTTCACCCCAGGATCGTGCTCACTTACCGCATACAAATTGACA
CCAAGCGGTTACGAGTGGGGCCGTAGCAACAAGGACAATGGCAGCAACCCACATGGCTAT
CTACCAACTCACTACGAGAAGGTCCAGATGCTTCTCAGTGACCGCTTCCTTGGGTTCTAC
ATGGTACATACCTCCCTTAGCAAACCCATATTCCGTAGCAATTGTTCTACGCAACCAGCC
ACCCTTGAAATTTGAAATATTATTCACTGAACTTTTGTCTCCACCAGGTCCCGGACAACG
CTCCCTGGAATTACAACTTCATGGGAGTCAAGCACGACCCATTGATGAAGTACAGCATGA
AGCTAGGGACGCCCCGAGACTTCTACCACGAGGACCACAGGCCGACACACTTCCTGGAGT
TCAGCAACATTGAGGAGGGTGAGGTCGCTGAGGGGGACAGAGAGGACACCTTCTCGTAGG
CACCGTAGCATGCCCTGCCCCAAATTTTGTTAGCACATCGAAACTAGCTATGAACTCTCA
GCAGTTTTGAAATAGAGACATTTGTAACCTGCAAACTTTGACTTGATACGTGGTATGATG
TTTGTCTGCCCCTTGAGATGTTATGACTTCTTTTGTAAGCCCGCTCTTCAAGCTGGGTAA
TGTACAGTGTCATGCATCATAACAGTGAATATTTTGCTTAGTGGCTTATGTAGTCTCTTA
TGTACTCCCTCTGTTCCTAAATATAAGATGTTTTAGCTTCTCTCTATTATCTCATGTTTG
CATATGTATCTAGACGGTTTTGTGTTTGTATATTCATTCATTTTAATCTATATTTAGTCC
ATATTGCAATATTTAGAACATCTTATAATTAGAAACAGAGGAGGGGGTACTCCACTCCGA
ATGATGTCTTCCAAACGCTGTGCTATTCTCCTAATTTTTTTTCGATATATGAAACCGAAA
TGCTATATATGTAATTAAATTTTGGTTACCCAACCTTTGTCTGCCGGTGCAAAAGCATTG
AAGAACCAGATCCTCGCTGTTATTTTCTCTTCCGGAACTGAATCGGGTAAGGGAAACGTT
TGCCCACGTTATTTTCTCTTCCTGAACTGAATCGGGTAAGGGAAACGGCCGGCGGTTGTG
TCGGATGCGTTCGATGAAGGAGCGATCCTGTGGCCGAGCGCATTTGCCGGCACATCTCCA
CGACATTCTCGACGCCAACCTCTTGCGTTTTGGCGTTACCGACGAGCTTCTCACCTCCTT
TGCTGCACCGGCACATCTTCGCAACTACTCCAAGCTTTACATGTCGGGCTTTTATAGCCG
TTGTAGCGCCTGCACATCTCCACGACATCCTCGACGCCAACCTCTCGCGTTTCATCGCTA
CCGTCGACCGTCGACCTTCCCTTG