morexGenes - Barley RNA-seq Database

Contig contig_1583622
Source Contig contig_1583622
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1583622 (7878 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1583622

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19132	1	994 bp	MLOC_19132.1	Available	Available	LOC_Os10g40440.1, FRAME:-2, EVALUE:3e-31, 13110.m03746 protein LTPL140 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MLOC_19195	3	3240 bp	MLOC_19195.2	Available	Available	LOC_Os07g10150.1, FRAME:-2, EVALUE:0.0, 13107.m01027 protein coatomer subunit gamma-2, putative, expressed
CDS Structure of MLOC_19132

CDS Structure of MLOC_19195

Contig Sequence (7878 bp)

>contig_1583622 7878 assembly3_WGSMorex_rbca.fasta
TTCAACCGGTTTGGATGGCGGCATATTAATNNGATAGGTGTTTAGTCATCTTTATCTTTG
ATCCACTCCAGGCCGCGGCGCGATGTTCGCCATGTATCTTTTTTCCTTTTTATATACTCT
GTACTTTCTGAACACTTAGTTTGATCAATATATGGCTGTATGCATCCCTCGATGCAGAGG
CCGGGGCAAGGCCTCCTTTTCTAAAAGAACTAACATGGTTATGCTTGAGTGTTAGGAAAA
TTTAGGCAACAACAAAGCATGGTCTTATGACATAACAGAATCATCTTATGACATAGCAGA
ATAAGGGTGATGACAGTGCTTCACACCTCAAGGCGACTAAGGTATATGAAAGCAAGCTAG
ATTTGGCACATATCAACTGTTTTACGCTGAACTTCAGTAATCTGAATCAAAAAGTCAATG
TTCTATTAATTATAAGTGGTATTGCACTGCATTGAATAAGTAAGACAATATAGTATTAAG
AGGAGATACACAATGATACACAATCCGTTGATTTGGTACCAAAACAGCATATAGTAGTAT
AGGAATAGTTATAATATTAAGCCAAAAGTTGTACTAATGTGAGTGTATAATTTTTTTTCA
CAACAGTACCTGTTGACAATATAAGTCGAAACTAAGAGACAATTTGAGCAACTCGAGAGA
CAATATAATTGTAAGTCGAAAGTTGTAGTAATTTAAGCAGACAATTTTTTTTAAAGAAGT
TACTTCGGAGAATAGTTTCAATGACTAATTAAGATACATGGTGTAGAATCCACCTTTATA
TTATGAGGCCAACAGATAGAATTGTACATAGATGGATGTAAGTGATGCATTTTCATAATA
TTTGGACATAGGATGGAGAAACTCAAAGGAAACATCAAGACGACGTCGTGGTATATCCAT
TAGGAACTGAACTCTGCCAAAAAAATAGTTCTGTATCAACAAACAAATTCATCAGTTCCA
ATTAATTGGTCAAATCAAGCACCCTAAAATTAGAAAAATTCTCCTCTTATGTTCTGAAAG
GTAAGATAGATTAATTATATTATTATACAACTTGAGAAGAAAGCATATGTAACATCATGT
GGTTTTCAAGAAAGGCAACATGTATGTAATTAATTAAATCCGTTAAAGGTCATGACTTTA
CCCATAAAAAAATTGTGTGCCTTGCAAATATTGCCAACAACGTATGGAACCATGTTTTCT
ACTTAATGCAAAAGAAACAATATGTATCCTCATTTCCTCACACTAATCAATGTCTTCATT
TCCAAATTTCATAGAGATCCATGTTGAAACAGTAGATATGAAAAAGAATAAAAAGGCAAC
ATACCTTGTTGCTGCTGCTGTCGAAGAGTTGTTGACTTGTTGGCACCGGGTTGTAGCCTG
GAGAGGAGGGGGGTCGCAGAGGCTGAGTGCCTCCCGCCCTAGATCGACGCGGAGTAGAGG
GAAGAGGGCCTCGCTAGGATTCAGCTGCTTGTCGGAGGGCCTCGACGGCGAGCAGCAGAC
GAGCACTGAGATCAACCTCCCATGGAACTGTCTCTTGTTTGAGGGTTGGGGACGGGTGGG
ACATGGATCAAGCAAGCCATGGAGACCAAATCACGTGCTCGATGTAGAAGCTTGCTATGA
ATATGATCATTGAAAGTACCGATTGTGGCCCTCGTTCTACAACACATAGATTTAGCGTCA
AATCACCACCAAAATACAACCTTTTCCAAATGGAAGGGCCATGTTACTGCTGGAAGCAGG
ATAAACATCCATCAAACTCATGTCCAAAGCCTCCATGAAAAAAAAAACTCATGTCCAAAG
CCTCAAAACAATGATAGTGGGTCATGGGTGCCTCATCCCACAAGATTAAGTTAGTAGATA
TGACCTCCTCGAGGCATTACATCCACTATCATCATTAATATTAGCATCAAGTAGAATCCT
AAACCAGGGATGAGCAGTCTGACCTGGCATTGATAAAAAAAATAACCGAGGAAGATGCAG
CGGCAAGAGCAATCCCACCTTCCCATATCAAGTATTGACGGCGTAACAATACAATCACAC
TGAAAAATCTTGTCTATACAACCATGCCCAGAAACAAAGATACACCTCCCACTCAACATA
TCTATAGTCTATAGCATGTATAATTTTATTGTAAACAACCCCTTGATCATGATTTAACTC
ACCCCTAGCAATTCAACTTGGACTTTCAACCCAACCTTATTATATTGCATTTCGTGTACT
ATCAATTATAGTAGTCCCGGTTAATGTCCCGATCCAATCAAATTCATTAGATAATTAATT
GTTTGTCTCAAAAATCTCTAAACTGAAACAATTATCAGGTTGGGTGTGATTTTTTATTGT
ACTCAGCAAGCTATGATGGTTTATAATTCACATAAACTTGAACATCCAAAGCATCATATC
GGTCAGCATCATTGAGCAGATCAAAGTTACTGAGTTGATAATTCATAAGCTACAATAACG
GCAACTATTGATCCCATTTAGGAAACAAGGTGAGAAAACAAAACAAATAAGGTATATCAA
AACTACAATGAGGATTGTGGTTCCTGCGTCCATGTTAGTTGTTATGCAAAATATTGTAAT
AGAAGTTGAAGGTAGAACGAAAGAGAACCGCTTTCTGAAATGCAAGCTCACATAGTATGG
TATGGCACAATGAAAAATAACATTATCTACAGTGCCATATGTGCAACGGCGGAAACGTCT
TACCCGATGTGGGAGATGGTTGCGTGTTATATAGAGGGGCGCAAGATCCCTAGAGCGCCT
ACAAGTCAGTTTAGGTTGATACAATCTTGGAGAGAAAGAAAGAGAGATAGAGATAGCTAG
TTACAACCGAATTTAGAGATAAGACTCAGCTAACTTAAATTACTCTATAAGAAATCTCCT
ATATGATTACAACTCTAACCAAAGTATGTTTAACACCCTCCCTTAATCACAACTTCATCA
AGTTGAGATTATGTTTGAAGTCCTCAAAACTTTGTGTAGGTAAAGCTTTTCTAAACCCAT
CAACAACTTGATCTTTTGAATGGATAAACCAAATGTCCAGGAGTTTATTTGCAACTCTCT
CTGACAAAATGAAAGTCTATCTCAATGTGCTTTGTTCTAGCATGAAAACTGGATTTGCAG
ACAAATATGTGGCTTCAAGGTTGTCACATCACAAACAAGGAGTCTTGGAGCTTTTTATAC
CCCAACTCTTTTAGCATGGATTGTACCCATATGACTTCAGCTGTTGCATTTGCTAGTGCC
TTGTACTCTGCCTCGCTGCTAGATCTGGAAACAGTAGCTTGTTTTCTAGCAGACCATGAG
ATGAGATTAGGTCCAAAAAATATTGCAAAACCACCTGTTGAACGTCTGTCATCTAGATAT
CTTGCCCAGTCTGAACCAGAAAATGCACTAACAAGTGTAGAAGATGACTTGCTGAAGTTT
AGACCAACATTCATAGTATGTTTCACATATCTTACTATACGCTTGGCACCTGTGAAGTGA
ACTGTAGTGGGTGCATGTAAAAACTCACACACCTTGTTTACAGCAAAAGAAATATCAGGT
CTTGTAAATGTAAAATACTGAAGAACACCTACCAGACTTCTGTATTTAGTAATGTCCTCT
GAATCTAGAGGTTTTCCTTCCATGAGAGATAGTTTTTCTATACTAGATAAAAGAGTGGGT
GTGGGTTTACAACCTTATAGGGCAGCCTTTTTTACCAAGTCTGTTGCATACTTTTTCTGA
GAAAGATGAAGTCCATCCTTGTGTTTCTTCACCTCAATTCCAAGAAAATAATGCAACTCT
CCAAGATCCTTGAGAGCAAATTCTGCACTCAAATCCTTCAAAAGTCCTGATATTACCTCA
TTAGATGAAGATGTAATAATAATATCATCTACATAGATAAGAACAAATATTGATGTATTG
AACTTATTGTAAATGAACGATAAAGTATCAGATTTTAAAGGAGCAAAACCAAGTGTCTGC
ATCTTTTTACTGAGACGGGAGTACCAAGCCCTTGGAGCTTTCTTCGGTCCATATAGTGCT
TTATCCAATTTGCACACATGAGAGGGTGCAAGTTTGCTTTAAAACCCAGGAGGTTGTCTC
ATGCACAATTCCTCCTCCAGAACACCATGAAGGAACGTGTTCTGTACATCTAGCCGTCGA
AGGCTCCATTCCCTGGATACCGCAATAGACAGAACAAGATGAATGGTGGCAGCTTTTACA
ACTGGACTAAACGTATCCTCATAGTCTATGCCATACCGTTGTTTGAAGCCTTTCGCAACA
AGTCTAGCCTTATAGCGGTCAATGGTTCCATCGGCCTTTCTTTTTATTCGAAAGACCCAC
TTGCAGTCAATGAGGTTTTTACCTTGTTGTGGAGGAACCAGGTGCCACATTTTATTTTTT
TGAGAGCTTTGTATTCTTCACACATTGCCTTTTTCCACCGATCATCACCAAGAGTAGCTT
CAAGGGTGTTAGGTTCGCCTGGTTCACCTGTAGAGCAGACTAAACCATATTTATGTACAT
TTTTATAGTTTACGGGTTGAATTACTCCCTTTTTCAATCTTGTGTGGTGTGATATAGTTG
CATGAGTTGTCACGGCAGAAGATCCAGCGGCCTGTGGAAGTGGCCCATCTGCAAGGGATC
CCGATGGGGATCCAGGCGCATCAGCCGTGTCGGGCGATGTTGCAGCGACACTGGGATCTT
CTGCGGTGTCGGATGAGGAGTCGATGAAACAGGATCCGCAGAGGATCCTGGGTATAGCGG
CACGGCTCATGATGAGGCTACGAGGCAGCAGCCCTGCTGCGATCCGCTTCGGCCGCTCCT
GCGCCCACCTGGCAAACAGAGACGCGCCGTTTGTACATCCGGACATTATATGTTCATGCA
CAAAGTTTGGTGAAAAGGACACCTTTTGTGGTTTGTGTAGAACAGTAAAAATAGGCATTT
TTTCGATGTTTGATTATAACTATTCATGAGGCATTTTTTCATATTTTTTATGCATTCCAA
AAAAGTGTTATTTCTTTGTACAATCCTGTGCGCAAAAAGGAAATGTCTGAATATGCACGC
TAAGTTATTGTTCAAATCTTTTTAACATTTTAAAATGTGTATGTATATGTATGTAGCTCT
CACCATATGCATCTGGCCACTGCACAACTCCTCAGCCAGCCACGCCTGCGCGTGGCCTCG
TCATGTTTGCCGTCCGTCAAATAGATGTAAACATATAACTATTATAATTGTTTATGATTA
TTTTATATATTTTTAAACACCTATTTACACATTTGTTTCAGCATGGCTTTCACACAACGC
GTGAGGCATTATCTAGTTTTCGAATATGTATGTGCGTGCGCTCGTCCAAATCATACATGT
GTTTTTTGAAAGAAAGAAAAAGGGCAATTAACTAGAGCAATAATAATTGCTCGCTGATGA
TATATATATCAATACGAAGAGTACATGGCTGTTTGCCAAAAACAAAAATAGAGTGTTCTG
CTTACAAGGATTCAAAATGTGGACACGAAAATAACAAGGAAGTACGGATCGAAAGCAAAT
CTTATTCAGCGCCCATTCAGCAGCACGCGACCGTTAATGGGCTGGGCAAGTGAACTCGGA
CGGGCACGTCTTGCCGCAGTGGTCGAGGAGGAGCCTGATGTCCACGTGCACGTCGAGGTG
GATGCCGAGGACGTTGGCCCTGACGGCGGTGCAGAGGCAGACGGCGGCATCAAGGTCGAC
CAACCCCTGCAGCAGCGGGCAGCACTCGTCGCGCGCCGGAACGCCGACCTTGAGGTCGAG
CAGGCCGCCGAGAACGTTGGCGCACACCCTCAGCTTCAGCGCGTCGATGGAGCACTGCCC
GACGTGGCCTCCGTGGTACGGCGGCGGAACGACAACGGGCGGCGTCGGCACGACGACTGG
CGGCTGGCAATAGGGTCCGCAGCCGTGCGTGGCGACGGCGGAGAGGAGGAGGCTCAGGGC
CACGAAGGTAGCGGCTTTGGATGCCATCGTGAGCGTGTGCTTGAGTAGGATATATATAGG
TGGTGCTTTGTGTGTTTGGGATGCATGAGAGCTTGGAGAGAGTGTTGTATTTATAGCCGG
GGATGTGGGTGTGTGCCTGCATGGGATCGAGCCTGTTTGGTGTAGTTTGCATGATCATAT
ATACGTGGGCCATGTGCGATTCGATCGGCTTGGAGACTGCTAGGTTGTCCTCTCGTCTGG
GTGTACCATTTGTTTGATACGGCAAGATTTTAGCATGGTGGTATTATTAATCCTGGAGAT
ATCACAGATATGGCAACAAGTTGAGCAATACCATTGCATGTTCATGCATGTTAGCCAATC
TTGTCATGCCACACAACATATATATGTTAGAGTATATAAAAAGGACAAGATTATGCAGGC
AAGTTGAGAGATGACCATGCGGTGTGAGTGCTTGGACTTCGTTATGCGGTGTAAGCCCTT
GTACACGCCGCCGTCACAAGGAAATAATAATAGGGACGCGCATAACCACTGTACCGGAGG
TTAAGGCGCCATCGAGGGTTACGCTATCTCCATATTAGAACCATGTTCCTCTTTGATAGT
ACCATCAGTATGATGTGGGCTCTACAGTCACATGCTTTGATAGTCATCTGGATTAATTAT
CAAATGGTAGGGATTAATCAGGTGCTAATCACTGCCATTTTATACTATATGATAGTGGGA
ACTTTGGCTGATTTTTCTTTTTAAGGAAACTTTTTCATGGAATAAGCTAGCTGGCTTAAT
TTGTGTGTGTCTTAGCTAGGCCTCAAGTCAAGTGCTCGGTGTGTCGGTCTATGAGACCTT
AACAGTTTCTCTCTCTAATTAAACCCAACTTTAACAGATTTTCTAACCACAGCATGCTGC
CTGCCTTTATATAGGTGTAATCAAATTACTAGTACTATACCATGTCAAGGCGAATTATTA
AGAAAACTATACCTATATAGGCCCTACTTTTATCTTATGAAATCTCTTGCGGAGAAATAA
AAATATACCACGTCCGTGACAATTTTCTTCCTTGTTCTGGGCAAGTTAACAATGGGTCAA
CAAGAGCAAGTGGAACGAAATGCGCGACAAATTTGCACGCGTCGTCGAGTTCACGGGCAC
CGAACATGAGCTAAATAATTGTCTTCCCGACCATGGCCACGCATGATTCCATTGACGTAA
TCGCGTCAATCTATTTTAATTTTTTGTTTCTCGTGACACTAGTAGAAAACAGGGTTAAGC
CGACATCAAGGGTTATGTTACCTTCATATTGAAACCAGCTGGAACCATATTCTTCTCTGA
TAGTACCATCAGTATGATGTGGGCTCTACAGTCACATGCTTTGATAGTCATCTTGATTAA
TTATCAAATGGTAGAGATTAATTAGGTGCTAATCACTGCCATTTTATACTATATGATAGT
GGGAACTTTGGCTGATTTTTCTTTTTAAGGAAATTCTTTCATAGAATAAGCTAGCTGGCT
TAATTTGTGTGTGTCTTAGCTGCCTGCCTCTATATAGGTGTAATCCAATTACTAGAACCA
TACCATGTCAAAGCGAATTATTAAGAAAACTATACATATATAGTGTAGGCCCTACTTTTA
TGTTATGAAATATCTTGCGGAGAAATAAAAATATATCATGTCCGTGACAATTTCTTCCTT
GTTCTGGGCAAATTAACAATGGGTCAACAAGAGCAAGTGGAACGAAACGCGCGACAAATT
TGCGCGCATTGCCGAGTTCACGGGCGCCGAACAGGAGCTAAATAATTGTCTTCCCGACCA
TGGCCATGCATGATTCCATCGACTTAGGCCCTGTTTGGAACCACAATAGATTATAATAAT
CTGGATTATGGAGATAGATTATATAATCTGGTTTATAAAAATAATCCAGGTGGACATGTT
TGGAGGTCAGATTATATA