morexGenes - Barley RNA-seq Database

Contig contig_158349

Source Contig contig_158349

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_158349 (6193 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_158349

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19097	1	469 bp	MLOC_19097.1	Available	Available	None
MLOC_19099	1	678 bp	MLOC_19099.1	Available	Available	LOC_Os03g52730.1, FRAME:+2, EVALUE:2e-53, 13103.m05751 protein magnesium-dependent phosphatase 1, putative, expressed
MLOC_19098	1	283 bp	MLOC_19098.1	Available	Available	None

CDS Structure of MLOC_19097

CDS Structure of MLOC_19099

CDS Structure of MLOC_19098

Contig Sequence (6193 bp)

>contig_158349 6193 assembly3_WGSMorex_rbca.fasta
AGGTGCTCCGGCTATGGAGTTTTACACGTCGCCGTCGCCCCTCCGGATCTCCGTCGCTGC
TGGAAAAAGGATAAGATAAAACAAAGGATCGCGAGTGAAAATGTTACAGATGCAGCGGCT
TTCTTGCAAATCTGAAACGTTTTTTTTTCAGATATCCACCGAATCAGGGACTGTGGGTTG
AATCCTCAAAAAACGAAGGGACTGTTTTGTAAAAAGGCCGCGACGGACGACAGAAGCGCT
CCGCGCTTTATTATTAGGGGAGAATAGACGGAGAGAATAAGTAACATATATGTGCTGCAT
CTGAATTTGGCAACAGTAGTCTTTCAGATAATGAGGATACAAAGGGTGACTGACAATCAG
CAAGCCAGCATCGTATCATTCCCCCGAGACAAAAAAAATAGCACATCTTTCAATGTTTTA
CGTCTCCCCTTGTGACGAAGAACTAGGTTACTCTAATAAAATCAAGCTACACCAAAATGG
CATCACATGTTTTACGCCTCAAAGTTTCTCTCCCTTTGGCACCCAAGATTAAGCCGCTCT
AATAAATTATTATTGAGTTACAAAAAGCACAGCACTGGCTGGCGCAGGACGTGCAAGGTT
ACTGTAAGGCGCCTCATCCGAAAACTGCCAGTCCTTAGCCAAGACTTAGCTAGTGAGAAG
ATCAGCTCAGCATTACCGATCTGATGGCTGGAGAAAGTCGGGATCGAATCGCATCAATCG
GAGAGCCTGAGTAGACTAAAAAAAATACTTTGTATGATAACTTGGTTGCATGATAGTAAA
GCAGCTAACGAGCGCCGCAGAGTACAACAAGTCCTTACCACCACATTTTCCAGAACTGGT
TCTTACACAGCACAGCTGCCCGACCACACGATTTCTACCCGTTGCTGCGGAGAAGCATTA
CGCGGCAAAAATTCAGATGCAAGAACTGGAAAGAACATTGTCGAACATGCGTGTTGGTGT
GCAAGGTACTCACAGCTGGGCATCACTGGCAGTCCTTTTTGATTTGTGCTTTGACTTCTT
TTCTTTCTTCTTGTGGCTGTACAAGTTTTCAGATAGCAAAGCATGAGTACATGATGAGGG
TAACAATCATGGAGGGCGTGCAGGCTTGCGGAGTTGGGAGAGCTTACTCGTCATGAGAGC
TTGAGCTCGGATCCAAACAATGCTTCAGCTTGCGATCAGCGTGCCTCATTTCTTTCGTAC
CAGGTAGTTGAAGCTGGCTAACCTGCATATATATACATATAGAGATAATAGAGGCAACGC
CAAAGGTACTGATAAGGGCATCAATGTTTAAATACCCTCCTAAACAGTGGCATATGTTCA
ACCAAGCACCACCTTGGTTAATCCTCTTTGTTAACACAAAGCATTCATGCAGACCGGTGA
AATGATGTGATTTTTAACAATAAATCTATTTTATCTACTGTGCAGGTTATTCATGCATGT
ACACGATGCCTCCGTACTTGGTCTATCCTGCAGAGGCCGGAGGACAAAGACCTTTCTATG
ATGGCGTCTACACGGCTGGAGCATACGGCCAGGGAGGTTTTCTCCCAACATGGCTGGACC
TTTTTATGATGGCGTCTACACGGTGTAATCTTCGGATAGAATTTACTCCACCCTAGGCTG
GACTTATTTACTTTTTGCTTTAAACAATTTTATTTTTAGGTTTGTTGGACTTGTTGGCTG
TGTGCATCGCGCTATGCAGAGGCCGGACATTCTTTCAATGTGGTTGTATCACCTCGATAT
ATCAATTGAATGAAATGTTCTTTATCGAAAAAAAATGCAGACCGGTGAAATGAAACACGC
AGTTAAAGAACAATTATTGGTGGGAGTTTACATGCTTGTGTCATAAACTGTATTTGTGCC
AAGCCAGGTAAACATTCTTACCAGGTGATTGATTGAACTGATTATCTGAATAAATTGTTC
GACTGGACAATCAAAGTGTTGCCTTAAAAAAACACTTTCCAAGTATCTGCAAACAATCAA
CGAATTTAGCAAGATCAACAATGAGTAAATGTAAGATAAAATATTGCATCATAAAACGCA
GAGTTCTGACAAATTAAGGTCATAATAAACAAAGATAAGATTGCGACCTTTCAAAATCGA
GGACACTGAGTGCACCGTTGGACTTGTACAGAGCAGCCAAAGCCAACTGTAAAAAATAGA
ACACACTATCTAGTCAGATCGCATAAGAAATTGGTGAAACTCTGGGGTTTGAATACCCTA
AGCTTGACACTGAGGATTAAGCCTTCTTAATTGATGCACATTAACCAAGAAAATTATGAA
AATGACAGTGATGTACTGGAGTAGCACACTAACAAAAGATTAACCATAGTATTTATAGCT
TAAGACTACCTGTCCAGGAGTATAGAGAAGAGGTGCATCAGTCAACATCATTGTGTCAAC
CTCAGAATTCGCAGTTTGATGCAAATCCTACAATACAAACATCTGATGCATAAGCAGGGC
AGTCATAAAGCTTGCATGTTTTGTTATTCATATAACTTTGCTTTCCTTCCATGTAAGAAA
TAAGGTGAAAGAGCTTCTTTTACATTAAAATGGTTTTATAACTTTGGCAACGGATGCTTT
GGTTATTGTTTGAGAAAGCCACACAAATTAGTTCACAATATCTATTTGCCTTATTTGCTT
ATGTGGCAAATTGGTGTATGATGTGTCTTGCTATCTAGTAGAAAGAAGTGAAAAAAGTTA
ATGTTCAGCACCAGCCATAGTGTGACATAGTAAAATCAAGATAAGACTTGATGATTCATG
TTTTCTGTATCCTTCTGTTGATGCAATTCCAAAAGCAAATGTGGCACCAACTCAATTTTC
ACAACTAACATTCACGCATTATTCTATCAATGTTTTGACGGTCACCTAGGAAACCCGAGG
TTGTAGATAAATAGTTCATTCTTTTCCTTATTCTGATATCACAGTATTTAAACTCATACT
TAAGTCAAAAGTTTATGCTAAGATCTTGGTATTATCAATTAGTACAAAACACAGTATTCT
CAGTTAACCTTCATCTACCAGTTTAGGGTTAACCAAACCAGACTTCTATCATGAACTCAC
ATTATTTTCTCAAATGATTAGGACGTAGAATTTGTGACTGCCATTCATAAGATACTATGG
TTATGTAAGTGATTGTCGGGAAACATCAAGTAAAATATAGAACATAATTTACGTACACAT
GTCAGAAAAGGCTAACACAGTAAACACTTTATTAATGCGTTCTTGAACAGTATGGCAAAA
GGGTGAAAGGAATGTATGACCTTCAACCGTTGGTGTGCACCATTACCTGCCCTACAAAAA
TCCTTCGTAGAACAAAAGAAAAATGTCATTAGCTGCAGCCATATGATAAGATAGAATACG
ATGGACTTATAATGCTGAATACAATGGAATGTTCACACAGAACTTACATCCATGTCATCA
ATAAATCCTTCAATAGAACGATATGGAGCATAAACGATCAAATCAAAATCTAAAGACTGC
AAGAAAGCAAGAAATTTAGTGTCATATTCTGTTTGCTTGGAGGTGCTATAAAACTTGAAT
ATGGAAATGGCATACTTTCAGAACAATCATCTCATTATTTAGAATAATCTGGTGGTCCTG
CTGAATCCCTTTGCCAAGTTCCTCAGCAGAAACGTGATTTTCTTCCACTTTGCAAGAAGC
ATATACACAAGTTAACCTGTCAAAACAAAATTGATTAACTTGGCCACTGGCAAATACTAA
CAGGGTCAGGAAATAACATTGATAGGAATATAAGATACTACAGACTCTCATACTTTTATC
TTTGATTAGGATACACATATTCACTCTGCACAGAAGTATGAAGGGTACCATTCGTTTGCC
TAGTTTTCTAGCTACATTTGAGAGGGAAGTAAATCTTAGCTGAGTATTCATAGTCTCCTA
CACCAGGATTTTATGTGTTCCAAACCACGAAACTATTCATGTTACCGCCGCTGCTTACAT
AATATGCTTTGGGTGGTGCTCCATTACAGACCACTGTAGATAGAATCTTTTGAAATATAT
TATGGCTGTAGCCTGCAAAGCAACAACTGACTGTTAGCACGCGACCATCAAGCTAGCAAA
GGCACGGTATCTTGGAAGAGGAATGCTTTACCTGAATTTTGTGGGGGAATTTGAATGCTC
TGCACACTTCCTGAATCTTTTGCTCATAAAATATCCGCATCACTTGCTCCTCTTCGCAGG
ATAGAGGCTTCACACTCGAGCTCCCAACAACTGAATCCAAAACAGTGGTTTAATAACACT
ATAACACATCTAAATATGACTAGTCGAACAAACGCTGCAAAAACTTTTGATGAACATTGG
CCAACATGGAAAACAAGCACAACTATGAAAGAACAAAACTTTGAAGCGAAATTAGCACAT
AGACACTGATCCTCATGGCTACTCATAGAAACATATAGGCAGCAGAAACCATCAAATGGG
GTGTACCTGTACCATCAGGCACAGGTTCTGGGTTCGATATCGAGCCATCAACAGGGTCCA
CCTTCAATCTCGTCGTCCCATACTTCACAAAGAAAACAGAGGGAACAAAAACAATGAGCA
GCCAGTATGTATGTAAGCTAAACAAGTGAAGGAATGTAATGGCGTAGGGAGAGCCCAACC
TGAGCGAGTATCTCCGCGGAACGCCGGTTAGCCGTCGTCCACTTCTCCACCTGCAAGCAA
AGCAGAATCACCGGCATCAGCATACCATGTTGTGTATGTCCAGAGCATTGCTATAGGCTT
AGCCGTCCCAGGCCAAAGCAAACCCTGGGCACCGAGCAGTGAAGAAGAAAGAATGGATCG
GAGAGGGAGGGCTACCAGGTCCTGCGTCTGGAAGATCCACCGCTCCCGGTGGGTGGAGGT
CTGGAAATCCGACATCTTGGCGCCCCTCCCTCCGCTGCCGGCGGCCAAATCGAGTCCCTC
TCCCCCCTGCTGGTGAACACCGCGAGCGAGATGCCCGCTGCCTGACGGATGCGGGTGCGG
AGGGTATGCCGCAATACTATGGCGTCCTCCGGTGGGCTCCGAGGAGGGGCGCGGCGACGG
GCGGCAGCGGCAGCGGCGGTCCGGCCGTCAAGGGGTTTCGGGTGGCGCCGGTTGTGGAGC
AGAACCCCTCCCGGTCTGGTCTCTGGTGTTATGGACAGAGAGAGCCCGAGTGGTGCGGGC
CTGACCGGCCCGGAAACGGAAACGGAGAAGAACACGAAGAGCTCGGCCATCTCGACTGGA
CCGGCCCATTACAGATTACCGGGGGGAGATGGGCCTGGCCGCCTGGCCTTTTCACCACCA
TCGATCCTCCACGCGTTTTGATCTTGTCGTCGCCATATCCTTTCTTTGTACCTGCCCCGC
CGTTGAACCGGGCGACCAATCCCCTCCCTGCCGCCGGCGAGCAATCCCCGCCACCACCGC
CGCAGCAGCAGCAGCAGAAGCAGCGCCGGCCGTGCGGGATGGGAGACGAACGGGTGAAGG
CGGAGGCGCTGCAGATCCTGGGCCTGTTCCAGGTGCTCCCCCGCCTCGTCGTCTTCGACC
TCGACTACACCCTGTGGCCCTTCTACTGGTACGCCCCGCTACCTCGGCCCCGGTTCCGCT
GGGCTCGGCCGGTGATCTGACGCTCGGTTGGAATTTTTATGCGCCAGCGAGTGCCGCTCC
AAGAGGGAGTCGCCGAGCCTGTACCGCCACGCCAAGGGCATCATGTGCGCGCTCAAGGAG
AAGGGGGTCGACATGGCCATCGCCTCGCGCTCGCCCACCTCCGACATCGCCAGGGCCTTC
ATCGACAAGCTCGAGCTCCAGCCCATGTTCGTCGCGCAGGTGAACCTCGCCCGGCAGCTG
GTTTCCGTACATCCTGCACTTTACCTTTGTCTCAAGAATTCAGTCAGCTTGTTAGGAATC
AGCCTTGTGATGTAGAAGTAGCTAAAATTGGGCATGTACATGGGTGCAAAATGGTCCTTC
GATGCACCAACCCTGGAGCACATTGGAAACAGATGTTCTCAAGTAAATGTTTTCAACCAT
GCCGCCAGACGTCTCCTTGGAGCTATTTTACAAAGTTTATGATCCTTGTATACTTAGAGC
TGGGACCAATGTTAAATCCGTAGATCGACTAGGCATAGATAGATCCGGTGAAACCTTTTA
CTCACCTAATCCCGAGCCCGAGGAACTCCCTGCTCCGGCCATCGGTGCCGGTGTAGTCGT
CGGTGGCGTGAGG