morexGenes - Barley RNA-seq Database

Contig contig_158316

Source Contig contig_158316

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_158316 (1457 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_158316

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19030	1	777 bp	MLOC_19030.1	Available	Available	LOC_Os03g02300.1, FRAME:+1, EVALUE:1e-24, 13103.m00183 protein expressed protein

CDS Structure of MLOC_19030

Contig Sequence (1457 bp)

>contig_158316 1457 assembly3_WGSMorex_rbca.fasta
CGCAGGTGGCGCGCGCCCCCCCGGCGCCCCCGGCGCCCAGCCCCGCCGAGGTCGCCCTCG
CCCGCGTGCGCGGCGCCAAGGACGACGATGCCCCGGCGTACGCCAGCGCGGACCGCGTCT
CGGCCGCCGAGGGCGCGCGCTTCGAGGTGTACGACGGGAAGGAGCTCGCGGCCGAGGGCG
CCTTCTTCTTCGCGCGGGGGCTCGACGGGTGGCGCGTCGAGTGCCGCCGGCCGGCCGCGT
CGCGCTCGCGGGTGGCGGAGGTGCTGGTCCTCGCCAAGGGCGGCGCGCTCATAAGGGCCA
GGGCCAGGGCGGCGAGGCGGGCCGGGCTCGGGAGCAGCGCGACGCCGCTCGAGGGGATAC
CGGAGGAGGGGCCGTGCGGGTGCCAGTGCGGGGCATGCGGGGACGACGACTGGGAGATGG
TCGGAGACAGCAGCGACGATGACGCCGACGCCGACGCCGGCCACGGGTTGAAGGAGGAGG
AGGAGGTGGACGCGGATTCGATGCGGTGGGCGCTGGAGATGGGCGCCTGGGCGGTGTGCG
TCGGGGTCGGCCTGCTCGCCACCGCCCGGCGGTTTAGCCGGAGCCGGAGGAGGGCCGCGC
TCCGGTGATCCCTTCCCGCCCGCCGAAAAGGGAGGAATTTGTTTAGCTTACTGTTCTTTT
CACCGAGTCAACCAACCAAAAGTGTATATATTCACCGGATTTTGCACTAGTTTATTTCTC
TAGCGATTTTGTCAAGCTTTCTGTGTATGTAATGTGATGTGTAGATACGCTCGCTCCGAA
GGAATCCATAACTGTTGACGAGTTCCATTGCCGGATCATCAACATGAAAACCATTCTTAG
CACTTTTTTCTCATCTGACAGAAACAAACTGAAATTGGCACCCAAACTGCAACCGCCATC
GCACCAACATGTTTATATAGAATGGAAAGAAAGAAAGGGGTGCAGCTCCTGTTCTGAATA
TATTCAAGGAAAATTATAAAGAGAAGCGCGGCACCATAACTCTCTCATGCAGGGCTCGCG
CAGCCCCATGCGCATGCAAAAATCTTCCACCTCATGCTTACATCATCACATTCAATGCTT
TTTTAAATTTTAAAAATAATTTATCTCACAGATTAATAACTTTATTCAAGATTTGTATTT
TAAATTTTAAAAATAATTTATCTCATAGATTAATAACTTTATTCAAGATTTGCTTTCATC
GTTAGGTTCGTCTCGACGAGACCTTCAAAATAAGATCACATGTTGACATGTTTCGTTGGT
TTTTTTTTCACCGTTCCTAGTTGTCACATTTATGTCATCATAGTTGTTATCTTACGGATC
TATAGTTGTCACAAAAGTTATACATAGTTATCAGGACAATACTTTTATACTTTTTAAGCA
TTGCAATGTTATGTGAAGCTAAAAAGTGGGTATTAAAACACTAACAACAAGCAAGTAAAT
CGTAATAACTTCGTATA