morexGenes - Barley RNA-seq Database

Contig contig_1583084
Source Contig contig_1583084
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1583084 (6843 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1583084

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_19017	2	2498 bp	MLOC_19017.1	Available	Available	LOC_Os02g42040.1, FRAME:+3, EVALUE:4e-117, 13102.m04647 protein MIF4G domain containing protein, putative, expressed
CDS Structure of MLOC_19017

Contig Sequence (6843 bp)

>contig_1583084 6843 assembly3_WGSMorex_rbca.fasta
CTCGAAGGCGTCGATGATGTCCTGCCAGATGAAGCTCCAGCAGGCGCGCAGGAATTCAGT
GGTGAAGCCGTCTGGCCCTGGTGCCTTGTGCTCGGGCATGCGCCTGACCGCCTCCCAAAC
CTCCTCTGGGCTGAAAGGCGCCTCCAGGCTGGCCAGGTCGCCAGGCGTGAGGAGCTGCTC
GAGGTCCAGCGTGTGAGCTCGGTCGGGGGCTGTGCCCAGCAGCCCGTCAAAGTGCGCGAA
TGCCGCCTAGGCCATCTCCTCATGCTTGCAGAGCACCTGCCCATCCACGAGGAGGCTGTG
CATTGATAGTCGAATATAGCTTACAACTTTATACCTAATAGACGATGCAACCCTTTTGTT
TCTGAGAATCGGGAACCATGTGGTCTCACTCCTATGTGACTTTGCTTTTTCTGATGGTGG
AGCTAATCCAAAAAGAACAAGGAATAGGAGGAACTAAATTAGTAACACCCATATTACTGA
AACCTTATTTTACCAACCCTGCTTATTTTTTCATTGAAAAACAGCGGCAATACGGATTTT
ACTGATCTGAAACCTGACTTTCTACCCAGGCCAGCACATAACCAAAATACCTCCCAAGTC
CCATGAGGTGGATCATGGATTAAAATATCTGATAGAACAAAACACAGCAGCACTGAGCTA
GCGACAGCACGGGGCCCACTGCTTGTGTTTGAGCTTGGCTGACAGCCAGCTCCACCTTGT
TGAAAATTAGAAGAGTGCACACATATATCAAAAGACGTCCACAATCGACGTGTGATGTTC
TTCACAAACATTAGAATATTGCATGCTATATTTGACATTCCTTTTGCAACCAGGCATCAA
AGACCCGAACCATTCAAAACATTCATACCAGGGCACTAGGCCGTTTTTTTGCCCTTAGAG
AATGTCCAAGAACACTAAATTTTTTTTTGGCTTCTGGATGCTATTAATCTTTTAAAAATA
CAATGAGTAAAAGAAAATAAACAAAGATAAATGTATGGTGTCGAGCCCTGACTTTTGTAG
CAGCAGCCAGGCACATGTTCCAAAGTAAACGTAATGCAAATGAAACAGGGCAATACCTTA
GATGAACCTATTATTTTTGTTATAAGGCAGTAAATGCTGTTTTATTGTTGTTGTTTTTGT
ACTAGGAGTTAAAAGACAAGTCAACATGATAGTTTTAATGTAGAATCAAATATATTCCAT
AGCTCTATTTGCACATTCCTTCAGTGAGCTCATCCATATGTTCTTTCAGGATTTGTTTGC
TGAGCTACGACCAAACATGACCAGATATTCATCAATAGATGAACTTAACTCTGCATTAGC
TGAACTCGAAGAACACGAGCGTGCGGCTTCAGTAGAGAAACCTGAGAGTGAAAGGCACTC
GGACAATGAATCTCAGAAAAGGCAGCCACATGATGATGGCAGGGGTTCAGCAAATGGAGC
TGAAAGAAATGGTAAGGATCATGGAGAAGGCGCAGATAGTGAGAGCTATTCAGATAGTGG
CAGCATTGGTGGTCATGAAGATGAAGAAGATCTTCTGTCTGAGAAATCAAATGATGCATC
GGAGAACGAAGGTGATGATGAGGACGATGGGATGCCTGTTGGTTCTGATGAAGATGAGGG
TGTTGAGGTTAGACAAAAGGTTGTGCAGGTTGATCCCAAGGAGCAAGAAGACTTTGACCG
AGAGCTGAAAGCCCTTCTACAGGAGAGTTTGGAGTCACGTAAATCGGAGGTGCGTTCCAG
GTCCAGTTTGAACATGAAGGTACCAATGAATGTCCTTGAAGGTTCAAAGGATGCAAGGGC
TGTGGAGTCTGAGAGTGGAGAAGAAACTATGGATGAAGAGGGTGGTAATGCTGGCGGTGG
CAGCAAGGTGCGCGTTAAGGTGCTAATGAAGAAAGGGCACAAGCAACAGACGAAGCAGAT
GTTCGTCCCTGGCGACTGCTCTCTTGTACAGAGCACAAAGCAGCAAGAAGCTGCTGAGCT
TGAGGAGAAGCAGAACATTAAGCGAAGGATCCTTGAATACAACGAGAGGGAGGAAGAAGA
AATGAATGGCGGATCGTCACAAATGGGGAACTGGGGTCAAGGAGGGAGCAACACTGGCAG
CAGTATTAGATCAGGTGGGCGGGGCAATTGGGATGGCTGGATCAGGGGAGGCGCTCGGCG
TCACCATGCTGCTGGTGGTTTCTACCAAGGATATGGCAGGAGAAGATGAATGCCATAGTT
GTCCCTGAGGTTTTTGACAGGGCAATGGTGTCAAACTCCTAACGGAGAAGAGGATGCCTT
GAATTAGTTTGACAGGACGTAAACAGGATGATAGAAAAGGCTTTTCACCTCTGAATACAA
GTGGTGGGTCGACTATAGAGCCGGGCCCCACTTGACAATAAAACGACAATACCGCTGACG
AAGGAGAAGAATGTCTGAAAGGGCGTTCTTCTGCTGAAGTTGTTCAGTTGGGCTGGTTTG
TTAATGTGTACATAAAGATTTTCTTTTGTACTGGAGGGACACCTTGCTTCAGCTGTAAAC
TTGGAGCGTGCATATCTACCTGAATGTAGATGTGGTGTTGCTATTTGCAAATCTTCCACG
TGCCAGAATTGTTGCTTGGATGCCATGCCAGTGTGTTTGTATAAACCATAGACGAGAATA
AACACCGATCATGCTCATTCTTCTGCCTTAGTGTGCAACATTGCTGACATCCTTCTGAAA
CGTGGAACACAAGTCAAATCATTTCTATTGTATTATTACACCAAATTCTGGAAGTTGGTA
AAAATCTGCCAGACTTGCAGCCTGCTCAGTGGCTCGCAGGTTCGCGGCGCGAAACCTCAA
AGGTTCCCCGCAGCCGTGTAGCTGCAATATATGTGGTCGAATCCAAGTCAGAAACTTTTT
TTTTGTTTGAGGGAAATCCAAGTCAGAAACTGGGAGCGATCAAATCAACAAACTAGTTCC
CCCTGATGATGATTTCCGTCTAATCGACCGATCGCTTCCGCTTGGTGCGCTAGAGGCTGT
TTGCGTGCGCGTATATGCATCTGTACAACCATGTCTGCCACGATCTGATGCTACTTTTAC
GCGGAATGATCACGACGGAGAAACAGGATGGCTACGCCGTCTACCCTCAAGGCACATCCA
CATGCGTTTCTCTAGTTAGAGAGATCCACAGGCGGGGCGGCCATTGTTCGTGCCGCACCT
GCACCACAGCTGCTGCTGGTCAGATCCGTGATAATGCGGTCCTGATCTGTACCTAGGTAG
CGTAGCAACAGCCAGACATAGAGTCGGGTGAGGAACAAACTACCCTGTCCGTCCATAGTC
GCGGCCATGATTTTCTCTTTAGGGCCGGGATGCCAGAGCTACAGCACTGGGAGAGAGAAA
GAACCAGTTTCCGGGTGGCATCGAATCGATGCGGCCGGAATCTCCGAGAGCGTCGTGTCG
CCTCCCTGCTGGCTCCGTGAGGAAGAAGAATCTGGCGCGGGTGGACGGCGAACCTTTGAC
CCCCCTCACCGCAACTAGTGCTTTTAGATTCTGCATCCGCATCGCATTACCGGTCCGGCG
GTCTAGCGCCAGTAGCCACTCCAGTATGGTTGCTGTCTGTCTGTCTTCCTTCTTTTCTCG
TCTCAGTGCGTGCCTTGCCTTCTTTCGGCCGCCCGCTGGTACGTACGAGTAGTTCCCTTC
TCGGTCCCTAGTTGGTTGGATAGAGATGCATTTCCCTCTCACCGGCCCGGCCGCTCACTG
ACGTACGTGGAAAAGCAAGGCCGTGCCTTCCTTCGTGTGCAAGCAATATATGCTATGCAT
GCATTTCCCCCTCTTTTACACCTATCACCTATGAAGCATCGATACAGATACGGGGATACG
GGATACGGTGTTTTCTAGAAACAGCAATACAGTGATATATATTGTGAGCATATATACATA
ATTAATAACAATATATATGCAATAAAGATAAAAAAATATTGCTTGGATCAAAATGCTGCA
TTGTTTGTTGCCTCTGTGCCTTTTTTCAAACCCATGTGGTATGTGCCCACATATTTATGT
TAATATATGTCGATCTCTAGTCTCAACAACAGCAACATTAGTATGTCAGCAACAGTAATC
AACAGCATTATGCAGCAAAGCAAAGCAGCCATGCACTAGAATGGCAGCAAGCCAACACCC
GACAGGCCAGCACGGGATGAGTGGAGGAGAGCAGGGACTGGAAAAATAAGTTAGTACTTT
GCTGGCCATAGGCGGCCGAGGCGAGCAGCGAGCAGCAGAAAATCGATTCCAGGCAGCAGC
AGCGACAATGCGCTTATGCGGTCACTCAATCCAAATCTTGTGCCTACTCAATTGACCAGA
TAGATAGAGAGAGAAAGAGCGCCCTAGGTTAGAGCATCTAAACCCTGTAAAAACGCAAAC
TATAAAAATGAGACATGGGTCAAAAAAATTGATATTTTAAAGGTTTATTTTAGCTATGTC
CGAACAGAAACTGTAAAAAAAACTGTTAAACTGTAATAAAGAGCTCCTCCTTCGATCTAA
CGGCCGCATCCAACCTCGTCGGACGCGCCCCGTCACCCGTCGGCCATGCTCCGCGCCCAA
CCTCACCGTTCATGCCTTGTCGCCCGTCGGGCATGCCCCGTCGTCTCCGTCGTCAGAGAC
TTGCTCTGTTGCCAGCAACGTCGGCCGTGCCGTGCCCCTTTGCCTGCCGCGCTGGGAGGA
CTCCGACGGCCAGGCTGAGGTCATGGGAGGCTATGGCGTGGTCGAGCTCGTCCAATTCAA
ACCGGCGGCGATCGATTGTGGCGTCCAGCGGTTTTTTTCGGCGTGCGGTAATGAATCTGA
GCAAAATCCGCAGCGGCGTGTTTGCTTCGACGAGGTTTGACAGGTATACGGCCCCCTCCT
AGAATCGGTCTTTCAACCTTAAAAAATAATGGTTTCGGGTGCGGCTTTATCATGCCTTTT
AAATTTTTTACGGGTTATACCACTTTTACGGTTTCTGTTCTGTACATTTTTTACGAACAA
AATTGTAAAATAGATTTTTTTTACGGATTTGATCACTTATATGGGGTCTGCTAGAGATCC
TTTTAGAAGGTGGGCTTCTACTGGGTTGGCTGCCCTCCCCTATCCTCGACGACGTCTAGG
GCGTATTGGCGAAGTATCGATATTATTTTATTTTATTTTTAAATTGTAAAACATGATACT
TCGAGGATACGGGCATGAGCCGCCTATCGACTTATCGACTACGTTTTGTACGCCGACACA
GCTGATTTTGAAGTTTCGGTGCTTCAGAGTTTTACACATGCCCCAAGGCTTGCCCCTGGG
TTAGTGGGTTTTATTTTACCGGCGCCTTATGCTTATCCTCTTGTAGCAGTTTCATGTTAC
ACATGTAGTACTACAACTACAAACCATGATCGCGACAGGCCGGGTATATATAGCTAAACC
TAGCCTTGCTTCTTGCATGCATCAATGCATGCATGCCGCTGGATGCTAGTAGTATATGTG
CTACTTGCTGGATTTCCTACAGTGGACGCAAAAAGGATGAGCATGCATGCAGTGGAAAGC
TGGCTCATGTTTGCGGTGGCAAACATTCTTTCGATCCATGATTAAAATGTCGACTGAAAG
ATCTGTATCACGCACTTGGCACTGTAGGGTGTGGCTCCTTTGCGAGAGGGCTTTGGTTTG
ATCAGTCTATGTATTCAGGTAGGGTCAAGCTCCCACCTTGAAGGGACTTAACAAATCCAT
GCCTTTTCTCTCTTCTTCCTTTGCTCCAGTCTTGTGCTTGCTTAGTGGCAACCACGACAG
AATTGCAAATTTGCAATTGTAATATTACTGATGCAGCAGTCCTGGCAATTGGTTCCGGTT
TTTTCATCGTCACCCTGAAGGAAAGTGAGACTACATTCTTAAAGGATAGATACCACACAT
GCACGGCAGTGATGAATAAGATCTCTCCTTTCCTGACTACACATTGACATGGTGTTCCTT
TCTGGTGTCGCAATAAAAAAACGAAATTTCTTCTTACGTAAGCGTACCGACATATTTAGA
TATTTAGATGTAACATAACAAAAGGGATCTCTTTCAGCATCGATCCGAATCGACGCATGT
TGCTCGACTAAAAATACTGTGAAAACACGTCGGACTGACTAGGGTAGCCGTGGAATAAAG
CACTTTACTCTCTCAGAAGAAAATAGAAGGAAACAAAGTGCTTTAGCTTCGCCACCTCTA
GTGATGAACACGCAGATAGCTATAGCTAGGGCGTAGCTACCTTAGGAAAATCATGACTGA
ACTTTAGAGCGGAGGAAGAAGAACCACTGTTCTAGTTTCAACCAATACTGCAAAAGCAGC
AAAGCACTAGATGCGTCGTACCTGCATGCATCATGCATATGCTTGGCTTTCGCGCTCGAT
CGTCACAGCACGTAAAGGTCTCACGAATTGCGATGAGAAGACCGTTCGTGCGTCCACACT
CGTAATTTTTTTGTTTGTAGAGTGGCATTATTCCCACGTTTACTTTGTTTGCAATTATGA
CGATCTACTACATAGCTTTCTTACAAATGTTTCTCTTAATTATTACCATGGATTTTGTTT
TTGAGAACATTCAAAACTAAAAACAACTAGTCACGACTAGCGTCTAGGCGTGTTGTGTTG
TGCGTTGGGTGTGGCCTTGCTTGGGCTATTGTACGTCACGTCTGTGCTTGGGGCTTGTAA
TGACTCTTTTCTCAGTAAATGCAATGAAACACAAAGTTTTTGCAATTTTTTGAAGAGAAA
ACTTAAAATAACTAGGGAAAAGGTACACGGATTTTTTTTTCTAAGTACCACTAGTAGAAA
AAGGGCATTTAGCCCCGGTTCGGTTGGGCCATCAGTCCCGGTTCGCGAACCGGGACTAAT
CAA