Map Locations of contig_1582059 (8475 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1582059

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_18802 1 555 bp MLOC_18802.1 Available Available None





CDS Structure of MLOC_18802






Contig Sequence (8475 bp)

>contig_1582059 8475 assembly3_WGSMorex_rbca.fasta
TCCTCCCCTCTCCTCTCCTCTCCTCTGCCCCCGCTGGACTCGGATGGCTGGGCGTTCCGC
TTTCTGCACTGCCCGCCTTAAAAGTTGTGGCCTCGGATTGGGGGCGTAGGGTGGAGGCGG
AGGCCGTGGAGAGGAGAGGGGAGAGCGGCGGCTCAGGCTCAGGGTCGGGGTTAAATTTTA
GCACGCGGAGGCGGAGGATGGCGTCGCGCTAGGAAACCCCCCGGTCTTGGCTTGGAATTT
TGCGGCTGTACTTGGGCTGGCCACCGGTCTGGCATTAAAGGCGTCACACGGTATTCGTAG
GAGTAGTGTGTGTGTGACGGGCGTATCTCTGCGGTCCTCTGCTGCCGCCGCTACGGTTTT
GGTAAGGAATTAAACCACTGCAGTAAATGTTCCGCTCAGGCCCCAGTCCTTTGCTTGGTA
CTACTACTAGGGAAAGCGAAGCTGCGCGGGGAGGTCAAAATCTTTTTGTCAAGTTTAGTC
GCACTCGCACATGACCCCGTTATGATTTTTCTTTTTGACATTTGACCCTTTTCTTTTCGT
CACATGACTCGACGGAAGGATTACACAAATATTATCAGGGTCTTCGGCGGTAGGTTAAAC
AATGATGTAGCACATAACCTACCATCTGTTTGTGTGGTCACATGACACCGTCTGTTTAGC
GGCCTGAAGATGATGTAGCACATAACCTACCGTTAGGACGTGTGGCGGTGGGATGCAATA
GCCTACCGTCATGTATCCTAGCGGTAGGATGATGAATCCTTATGCGGGCGACCACACAAA
CATCTGATGTTGTGCGTCACACACACACCCTACCGCCACTCTCTATGATAGTAGGGTGTC
ATACTGCCATAGCCTATCGCCGGAGCCTATGACAGTAGGATGGTTAGAGTGTAACTTTTA
CACAAAACTTATATGTATTTTTTATAAATTTTGCCACAACAATATCATAGCCTTGAAAAT
AAAAAATATGCAGATCTCACACATTCTAACATGCTTTATGCTTTGATATGAATAATAATT
GGACAACTAAACTTATCAAATAATAGCAAACGGTTCCACATATCAAATAGAAAATAGTTC
GACAAATACCAAATTGTTTGACAAAGCCAACATTAATAGTTTAACTTGTAAAAACGGCAG
CAACTTCACTTCCTCCTTCCCTTCTTGGAAGTACGGTCCTCCTCGTTCCTTGAACGGATC
TCACTCGCCTTCTTCTTGCGCTGAGGAGGATGCACTCTTTGAAACGGGGATGGACTTGCC
CAATCCCTCTTCGGCGCATTCCTCTTCTCAAGCTAGGTTGTCTGAGTTGGTGGAGGTATG
TCATCGTAATCCTCCTCATCACCGTCCTCTTCCTCTTCGTCTTCCTCCTCATCGTCCTCC
TCCTCCTCCTTATCCTCCTCAACTACCTTAGACGACGAGGCAATATGGCTCCAGGAAGCG
AGGCTAGTCATAGGGCATGCACGAGCATAAGCATCAGAAGAGCTAGCGCACCTAAGTAGG
CCCACTAGCTTGCGACATTTGTTGACGAAGTTCAGCAACAAGAATATAATACGGATCAAG
TTTATGATTACAAACGAACATGAACATAAGAAAGAATGTAAGTGTAGGAGGCTCGATGTT
ACCTTCATCGTTCCCCTCAACTTCTTCTCAGTATCTCGAGACCCGTGGGCAGAACATAGC
GCATCCGAGCCATCGAAAATGGTTTTCTTCAGCTCCAAAGGCTACAAAATAAGTAAACGA
GTCAGACTCACTAAAGTAGATTTCATCCAACCGTCGGCTCAAAATAGGTAAACACAACTT
ACCACTTTGTTCATGAGGCGTCCATACTACCTAAATCCGTCTTGTAGCTCTCTGGTGCTG
TCATGGTAGGCTTCATTCTTGGAGTCGTCATTGAACAGTGCTTCGGCATCTGCTGTCGTC
CTCTGGGGCCTCAGGCACAAACGATGCTTCATGCCATCGATGTACCACCGTATGTGATCC
TCGTAGTCATCCGAGTCGACCACTTTCCTCTCCGCATCTTTGCGAATTTCCCACTCATTT
CATTCCCGGATATATTGGTCATGTGTCTCTCACTAGTCTATGATCGACCGATTCTTATGC
CTGCTCATCCTACAAGGCATAATAAAGAATGTAAAATATCATAAGAAAGAATGTAAAACA
TCAAAACGAAAGCACAAAAATAAAGAACACTGCACTCACAAGTGTAGGTTGGAAACACCA
GTGTCAGTTTAACGGTCCGGTGGGGTACGTTGTGCCCTACCAAATTGTGTGGCAACGCGA
TGTGACAAGTGGTATTAGACGGCGTAGACACAAATCATGGGCACGATGCACCTCTAGATA
AGATTGTCCTGCCTGCACATCACGTTCACCTCGAACCCCCACTCTTGTTCATCACATGGT
CGCCAATTAACCTAGTACAAAAAAGTTGGTAAGCCCACGTGAAAGTGTCATCGAAAAGAT
TCATAATCTAGTTCGTATACCGAAAAGCCGTCACAGCATCAAGACTGTTGGTGAAGACCT
TGTACAAAGCCTTGGGTGTGCTCATGTAGACACCCACCACGTCCCAAGCATACGCAACAT
CGGGTATCAAGCTTTGTCGTCATTTTCACCATCGCCAGTCCATGGAAATCATGCCAGTTT
CTCCGGATGGCTCACCGGGATTCGCTCCCACATCCAAATGAAGAGGGCCCAAACACATCC
ACGCATATCAGATGTTTCTTCCATCCTCTCGGTTGTGTCGTCAAGCTAGAAAACACATAT
TTATGATCAGATGACATAATTTAAAGCAGCATACGTCAATAAAAACAATGAGATATTCTC
TCACGAACGATATAGGTAGGCGAGGTCGGCGGACCCCCACCTGTACCCTACATCCCAGTC
CTTTAGGAAGTCGAGATACATTCAGAGAGCATTGTCCCCTGAGTAGTCTGTAAACACAAC
CTCTATGAGAAGAAACCACACATAGGCCCTTGCGTACTGCTCCGATTACTCTTAGTAGAC
ATCTTCCGGGCATTTGCTTTGGTGCTTCAGGAGCCAGGGCAGCGGTACATCAGATGTCCG
ATTACTCTTAGTAGGAGGCAATTGTGGATGAGTGCGCTAACCCTATCATGTCGGTTCTTC
CTCTTCACTCCTCCTATGAGAGCACGGCCCTTGATCAGTAGCGCCATAATCATCCCCCAA
TCCTCGAGGGTCATCGTCTTCTCCCCACACGAAAGATGGAAATTGTGTCTCTGGCCGCCA
CCGGTCCATTGAAGCTGTGAGAACTCAGTGGATGAGTGTTGGCGGCTTACGATTGAATTG
TAGGACGAAACCCAACAGTCGGGCTCTCTTGTAATACTGCGCGTAGCGCTCGTCGTACTG
CATCTTAACGATCGTCCGGTGACCTCTCATCCGCAGTGGCGGGAGCAACTGCCAAAATGA
AGACCTAAATAATTAGTAACCTATTTTCATCAATTTGAAAGATTTGCTTCAAGAAACATG
GTCATTACCATTCCATTCTCAATGAAACTGGCACGATGACCCTTGTTGAACGCACGGTCA
AGCATGGTATACTTAGTGCCGATGTTGCCCGGAAGAGGTGGCCTCCTAAATAAAATTGCA
TCAACATAAGCATTATAAGCATGAGCATAAGCATAAAAAATATAACGTCCACATGATTAA
TTCGTTCATATAAATTTTCTAACAACATCCATTATACATCATGCATCACATCATATCAAC
ATGTGTCATATCAAAACAAACATACGAGTTAATCCTCCAACATGCATCATACCATCCTTT
TTTCAAAAACAAAAAACTTGAACTAGGCTTCATCTTAAGCATATTTCCTACAACAACATC
GAATATACATCATGTATCACATCATAGCAACATGCATCATAGAAAAACAAACATACGAGT
TAATTTCTCCAACATGCATCATACCATCATTTTTTGAAAATATATATTAATGAACTAGGG
TTAATCATCACACTACCATTTAAACTAGTGATTAGAGTTCATATCCAACCCCATAGAACA
TCTAGAATCAATCTAAAACAATCTTAGGGTACAAAAAATTAAATCTAGTTATAAAAAGGG
GTGATTTGAAGTAAATAATGTGACGAATCGGAAGCTATTTGACTAAATACAATTGGAGAG
TCTGCAAAGGTAGGGTGACACAGGCTACCGCGAGGGCCTACGGCGGTATACAGGGACGGA
GGGGACGGCGACTGTCCATTGCTCGTGACATTGATTAGTCGCATACCGCCAGAGACCCTC
GCGGTAGGTTGTGTAATCCTACCGCCGGAGACCCTCGCGGTAGGTTGTGTAATCCTACCG
CCGAGCCCCCTAGCACTAGGAAAAAGGGCCAAATGACGAAAAGCAACGAACTAGGGTCAG
ATCCGGCTAAGCTTATCCAAAAGGCTCAAAACATGAAATTTAGCCACATAGGGATGCAGT
ACAATAAGTACAATTTAATCTTGGAGATTGGCCAAATTGGCATAGCGATGACCATTTATT
CTCCTCCTGATGAGATAATCTTTCCTTGTACTCTCCTCCTCCCGAAATATAGGTTGTTGG
GGAAAACATCCGACCAGGCGAAAACGATGGAAATTACATCTTTGCCCCTACTTTGAATTG
GTACACATGGTCGTCTTTCTCCACCCCACGTTTTGAAATCCTCCCGTGTCGTCGCCCTCC
CCTGCTTCTCCTTTGCGCGCCCAGGCCCAGGTACTCCCTGCCCACTCCCCTACTTCTCCT
CGGTGCTCCTAGCACTAGCACCGGCACCAGCGTTCCGGAGGTCATCCGCTTGTCCTCGTC
TCCAACACCAGCGATTCGGAGGCAGATCCAGCAGCATGCCTAGTCCCCTGCTTCTCCTCA
GCGCTCCCGGCACCAGCGATTCAGAGGTCCCACGTCCAAGTCCTCTACTTCTCCTCGTCA
CTAGCACTAGCGATCCGGAGGCGGATTCAGCAGGACGCCCACGTCCCAGGTTGCAGGTCA
CAAATCCTGGATAATAGTGATCCAACAGAAGGTCGCAGGTCAATAACTCTAGTAGCAGAG
AGGATCCACTACAAACAGAGATATCATAGGTCTCTGCAAGATCCTTGATCCTATGCGTGG
TCCTCCTCCTGGGCCTTCTCCTTCTTATCATGTAACAACAACAACAACAAGTCAATAAAA
ACAACAATTGACAACACCAACAGGTCAATAAAAACAACAATTCCTGGAGATCAATAGCAG
GTCAATAACAACATCAAAAACTCCTCAGAATCAACAATAGGTCAATATAAGCAATAGTTT
TCAGCAATATCAGGTGTATCATAGCATCAGTTTGACAGTAGCAACATCACAGATTAGAGA
AGAATCAATATGAGAGAAGCAACAACAGTTTGACAAAAGCAGCAACATCAGTTTGACAAC
AACATCACCAATAGCAGTTTGCGATCAGCAACAATCATGAATGAAATCAATAATAATAAT
AACAACAACAGTAGTAGTCTCACACCTACTCTCATGCACAATAACAACAACACCTGTAGT
TTTGACAACAACAATAGCAACAGTTTCATAACAACGGTGCTAGCACTTTCTCCTCGGCTC
CTTGTCTCAGGCACTAGCCCTAGCCCATGCCATCTCATGGGCTTCTCCTGCAACTCGAAA
TCAGTTTGACAACATCGGCAATACCTGACAACAGTAACAACGATAGAGCAATACTAAGAA
GCAGCAAGTTGACATGACAACATCAGTAGTTTGACAATATTACCAGTACCTGACAGTAGC
AATACTCGAAAAGTAGTACTCCTGCAGTAGTAAACCACTTTGACAACAACAAGAAGATGG
AGAACATGGTTGTGCCAAACCTCATATGTACTACAACTGGAGATGAAATGGATGAAGATC
AAGTAGTTGAAATGGATGAAGATGCGGTACTTAAAATGGCTAAAGATGCAGGTACAGTCA
CAATACCATTTCATACTATTTTCATTAATTGTAACATTTCAGAGTGTTGTAGCATTCTAG
CATATTTTCAGTTAAATCTACTATTCTAGAATACTGTAGTTAACTGAAATTATTTAGTTA
GCTGAAAGTGAGTAGCATATTTTCACTTAATAACTTGACAACTTGATCATTTGATCACTT
GGTCACTTGATCATTTGATCACTTAGAACATTTTCATTTGATCATTTCATCACTTTTATT
AGTAGGAGTGTTTCATTTGATCATTTTTTCTTTGTTGTATTCCTTCGTGTACGTGTTGAG
GAAGAACTTCAATAAAAGGGACAATAAAAACATTGATGACAAGAAAAAATATGTTTCTTA
TGTTGCATTGCGTACATTGTGTATGAATAGAAGGGGGCAAATTTAACAGAGATGATAAGA
AAAACATTGCTAACTTTTCTGGAGTAGGTGCTGGAATATTAAATTTTTTTGGAAGAAATC
GATAAGGCAATTTGCACAAGGTTTGGAGGTTGACGTTTCNNNNNNGAGAAAAGGAAACTC
TGGAAGAAAGGAAAATTGCTTGAGGAGATGCTCGAGGATATGCTTGAGGAGACCATTATG
AGGCATGTTGATATGCTTGAGATGAGGTTTAACATGTGTGGAGTATGATCATTTGTGTAA
CTCTGTGTTGAGATAAGTTTTTTTATTTGTATGATCATTTTAACTCCTCATGTGCATGAT
CATTTGTGTACCTCTGTGTTGTGATACTTTTCTTATGACAGGAGTAGGAGAGGAATAATT
ATTTTTAAGTTTAAAATAAATTCTTAGTAAATTCAGAGAGGAGAAGATGAAGAGAGATTC
TTGCAATTCCTACACTAAACTAAGCAAGCACTATTGCTTAAGTCCTACACTAAACTAAGC
AAGCTCCAAGAAACATGGATCTTCCTAACCTCAACTACATCCCACCTACAGAAGATGGAG
ATAATTGTTTGAGTGCCAATTGTTGGAGTAAATAGAACAGAAAGAAGAAAGAGAGAGATA
AGGGAGAAGTGAGAAGAAGAGAGAAGTGAGAAGAGATAAGTTAGAAGAAGAGAAGAGCTA
CTCCTACTCCTACTCCTAATTTAAAATAACAGAAAAGTTTTAACGGAAACTTTCATTTAC
TAGTTTTTTAATTAACATAAAATGTTATCATTGAATGAGTTTTCAATTAATTATGATTAA
CTGTAAAAAACCATTCAGTTATTGGAGGACACTTCATTGAACTGAAACTAATAAGGGAGA
GAAGAGTTAATGTTCACATGAGTTTTTTTGAGTTCTCTACTCCTTAGAATAAAATCCTCT
AAGAACATGTGTATTAACTCCTACATCTAAGAACATCTGCATCTAAGAACATGTGCACCT
AACTGGATTTGATTGAATTATGCAACAACATTATTTAGCCCGTGCTAAAGTTTGAGAATT
CTTTGGTTTTATCTTGACTGAATTATGCACGAGGAGTTAGTCGCAGCAAGCATAACTGTA
CACTCCCTGTTTTAGCCCAACACTACGCCTACTTCAAATTGAATTTACATACTCCAAACT
GTATTTCTATACTACTCCAAGTATAACAAACTGTATTACTACTTCAGTTTCATAGATTGC
AAGCAATTCTACTACTCCAATTTTCACATATTAAAAGAAATACTAACTGCAAGTAATATT
ACAAAATTACAGAGAACCAAAATTACATAATACTCAAGTGCAAACATTATAGATTAGAGA
GTACTCTAGTGCAAGCAGTACCATGTTGGTTCAGTTCACCTTAGCACCGGTGCAGAGGTA
GCTCTCATGAGATGGAGGCAACATCATGGTGGATGTAACAGAGGGCAAGATCAGGACACA
CCCATCATGGTTCATAGCTCGTCGTGAGCGTCGCTCCAGAGAATAGATCAAGTGTCGCTG
CGTTGCCGCTAGGTGAGTGTACCAGACACTGCATCATCGGCACATCCACAAGTTGTTGTC
AACAAGTGAATCGACCAGTGACTCACTCTCAGAGTCTCATTCGGTTTTGAGAGCCTGGTT
CCATGAGATTGTTTCCCTCGGGCAAGCTGTGATCAAAACAATGTAGCAGGTTTGGCAGAA
CCCTGGTGTGCCTTTATCAATCTCCTTAATAACCGAAGATCAAAGAAGCAGGCCTACTGT
ATCAAGCTACAACTACTCCAAATTGGTGAATTTCTGCACATTGGATTAATCCATGATTTC
CAAATCAATGTAAATCGGTGCTACAACTACTGCTACTCCAAATCATTGCAAATCAGTGCT
ACTTCTACTGAAGCTTGATGAGAAGATTAACGAGGAGACTAACAGGAGTAGCTAATATAA
GCTTCACGAAAATATTGATGAAGAGATTAACAAAGACGTGCAGAAATGTTGGATGGATGA
TGGTGTTGGAAATATGCGCTAGAGGCAATAATAAAATGGTTATTATTACATTCCCTTGTT
CATGATAATCGTTTATTATCCATGCTATAATTTTATTGTTCGGAAACTCAAATACATGTG
TGGATACATTCGTAT