Contig Data
morexGenes
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Map Locations of contig_1582012 (4222 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1582012

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_18790 1 1605 bp MLOC_18790.1 Available Available LOC_Os09g33480.1, FRAME:+3, EVALUE:9e-115, 13109.m03327 protein DAG protein, chloroplast precursor, putative, expressed
MLOC_18791 1 275 bp None Available Available None





CDS Structure of MLOC_18790






CDS Structure of MLOC_18791






Contig Sequence (4222 bp)

>contig_1582012 4222 assembly3_WGSMorex_rbca.fasta
TGATGAAATGTGATGAAATGTGTGATATATGAAATGACAGTTTTAAGGTTTGGGGTTGGG
GCAAAGACTAGAACCCTCAAACCCAACTCTTATAACGAAATATTTGCCCCTGTTTTTCAA
CCCTTAAAAGTGTCAAAAATGAACAATTCTTAACCTTTAAAACTGATTTTACATTTAAGG
GTTTGAGGGTTATACTAGTGATGCTCTTAAACCCTTATCTCCTCTCGCTTCTCTCCCCCT
CCTCTCTCTCCCGTCTCGTCCTCATCCCCTACCCATCTCCTAGGGTTTTTATCCCCCATG
GCGATGGCATCGCGCGCCGTCCTCCTCTCCCGTCTATCGCCGCTACCGGCTGCGGCCTCT
CGCTTCCTCCTCCGCCCTCTCGCCGCCGCCGCCAGCCTCCTCCCGGCGGCGACCTCGCCC
GTCCCGGCGGCGGCGCGCGGGGCAGTGCGGTGCTTCGCCACACAGCCGGCGACGTCGTCT
CTGCGGGACAACTCGCCCAACTGGAGCAACCGGCCGCCCAAGGAGACTATCCTCCTCGAT
GGGTGCGACTTCGAACACTGGCTGGTAGTCATGGAGCCGCCCGCGGGCGACGCCGCTAAT
CCCGATGTCACACGCGACGAGATCATCGATAGCTACATCAAGACCCTCGCCCAGGTCGTC
GGAAGGTACCGCCGTAACCATTTCTCGCATCTTCATCTTGTTGTGTTGAACGGGTGATGT
AGCTTTATGGATGGGATGCGCAGCGTGTTCTTGTTCTGTAGATTGATTCTCCTGCATATT
ATATCGGGGTTTTTCTCACTAATGTTTAGTTCAGGGGAATTTGCTTGTATCACGGGTTAT
TTTTTGGATCTGAACAAGTCTAGGTATCAGTTATGCGACTGTAAAGGTTTTTTGCTCTGT
TGACATTATATCAAATGTGATTACATTGTTAGTTTGTTCTGTCTGGTGCGAGCTAAAGAA
GCATAGATAGAGACATGGACAGGGCGATACGCATACGGGGACATGTGTTTGGGCATTCCG
AAAACAGCCATTCGGTGATAATGCCAGCCAGTATATATTTTCTAAAAAAATATGCCATAT
AATATAGAGTTAATAAAATAAATAAATAAACTAACGAGAAAATGAGATGAAATATTAGTA
GACTAGCAGGATCTCAACACCAGGCTGCCCTTTAGTCTCGCCCATGCATGATTGGCTACT
AGTGGTGGCGCTCCCAGATGGCAGATGCCATGCTCCCTACAGCAAGCAACAATCAACACC
CAACATCAGCACCAAAATTCAATCGAGTACAAATTCATGCAGCTAATAAAATACGCAAGC
AGGCAAGCAGCAACAGCATGTCCACATGGGGAAGCAAGCAGCAGCAGCTCAACAGCAAGA
ATCACAAAGAGATTAAGAGGTTGAGGGGAGGCTGCTGGGGGCTTGGTGAGTTGGGGTTAC
CTACTCGAGCATGATTGCCATTGGGAGGAGAGGCTGCTGCGCTTGGGAAATGGTGGTGGT
CCAGTCCAGGCGGTGGCGGACGGCAGTAGTGTGTTTGCTAGAGCCAAGAGCAGCTTGTTC
CTTTTGTGGGGAGCATATGTGGGAGCCTGATAAATAGGATTTCTATGGGGCTGACGCTGT
TATTGGGCCTCCTGGGTCCCCAGTGTATCTAGTACGTATCCCAACCAGTGTCTGTTTTTT
TGTTTGTTTGTTTGTAAATGAGGGGATACTGTGGATCTTGGATTATCCTGGTGTGTCGCT
GTGCCCTGCCGTGCTAGAATGGCAAATCGGCTGAATCTGCCGTATCCAAGCTTTTGAGGG
CGTGAGTTTGTGAGCTTATGTAAATGGAGAGTGCTTTGTTTCTGTGTCTATGTTCTGCTG
GGCAGGCACTTCTTATTACTGGCAAAACTAATGTTGGGAGTATGGTCTGTTACTGCCCTT
ATTGCTCTAATGTGATTTGGAATTTGGGGTCTTTCAGGGCATTGGTAATATTATCTTATT
TGATGAAGGCATGAAGCTGTCGATCTTCATAGTCACGGGGTGCAACACTTGTGCTTTGTT
ATTTGGCTTGATTTTGGTTATGTTTTGAAATATGGGCCGTGTTGCCTTTATTCAAAATTT
ATCTAATCTATGTACCGTGGGACATATTAACTTATTTTAATAATTAATGTTCCAGTGAGC
AAGAAGCTAGGCAGAAGATATACTCGGTGTCAACTCGTCATTACTTTGCTTTTGGTGCCC
TTGTATCTGAAGAACTCTCATATAAACTTAAAGGTATTAGTTCTTTATGAACTGATCTTG
AGTATGTTCCATTGTGTAATGCACTCAATTAGAAACATTCTTTCTTAAATCTTACACCTC
TTATCATTCACAGAGCTGCCCAAAGTCCGCTGGGTTCTCCCTGATTCATACCTTGATGTC
AGAAATAAGGACTATGGAGGTAATAGAAGATCATGCTGACCTTTTGATTACTCATTGGCT
GTTTTTTTTTGCTTTTCTGTATACTACTGTGTGGTTTGTTGCCTTCTCTTCAGAGCTCCA
TATAATTACCATGGTACTTCTAAATCAAGCAATTCTGACCTGCATGTTCTTTTTGTATAA
CACATAGTTGATATGCAAGCAGCCTACTCGAACTTACATTGGTCATTTATCCGAATTATC
AAAGCAAGATTTAGGGTTAGATATCAGATCTGGAGCCGATGTTTAACAGACTGTATGTTG
GTTATAAGATGTATTACTGCAATCTGAATTTTTGCTGTTCCATGAATTGTACTTCTACAG
TTACATGACCATATATGTTTCTATGATGTCTGTATGTGATCATTAGGGATATGAATATGG
CTGTTCTTAAGGGGGAGTTACAATAGGGTTGGTTTTTTCGCACTTCCATATTTATGTTTA
TTGCATGGATTCAGACAAATTTGGAGCTGCCCTTTCTAATCGGATAGCCTTGACATGGCA
CTAGCAGATGTCCGTTTCTTGCATTATGGGTAAGTAACATGCACTAAGCAACACCAGATA
ATGTTTGGGGATGAACCTGTTCATTTTTCATGTACATATGTGTGAGAACCAACTTTAATG
GGGTGAGTTTGGGCTTACTTAGCATTGCTGAAAGCATGTGACATGAATTGGTGAACAAAT
TTACAAACACTTGATACTTTACACCTTCTATTTCAGGGGAACCTTTTATAGGTGGGGAAG
CTGTTCCTTACGATCCTAAATATCATGAGGAATGGGTGCGGAACAATGCCCGTGCCAATG
ATAGATCTCGGCGCAATGATAGGCCCCGCAACTTTGATAGGTCAAGGAACTTTGAGAGGA
GAAGGGAGAACATGCAGAACTTCCAAAACAGAGATGCACCTCCTGGGCAGCAGGGTTTCA
ATGGCCCTCCACCTGGCCAGAACCCTGGCGGCATGCCTCCACCTCCACCACCTAGTCAGA
ACCGTGGCAACGTGCCTCCACCATATACTCCAGGTGGTCCGTCAAATTACCAGCCCCAAA
TGCAGAACCCACAGGCAGCATACACACCGGGTGGTGCACCCCAAATGCCGAACCCACAGA
CAGGGTATGCACCGGGCGGTGCACCCCAAATGCCAAACCCACAGACAGGGTACACACCGG
GCGGTGCACCTCACATGCCAAACCCACAGGCGGGCTACATGCCCAGTGGTGCTTCTAACC
ATCAGCAAGGTGGTCAAGCTGGCTACCAAAGCGGACCTGCTGGGCATCAGGGAGGTAACC
AAGTTTACCCAGGAGGCAACTTGCCTGGCGGCCCTGGACCAGCACACTCAGGCAGCAGTC
CTGGATATCAAGGTGGCAACGCACCACCTCGTGAAGGTCATGGCTATCCCGGCGGCTACA
ACAGCACTGCACCAGGTGGCTATAATCAACAGTAAGACTAAGGATGAAGCAACGCAAACC
ACCAATGAGGCGCCACTGAATCACAAATGAACTGATTTTCCTGGGAAGCGTTGCCAGTAT
AATTCCGTAGAAGATACGATGTGCAGTAGCATACGTCCAATTATTGTTATGGAATGTTTT
TATTGATTCTCCTTCAAAAAATAATCTAGATATTCTGTGACGCTCAATTTTTAATGTGCA
ATATTGCCAATGGTTTAGGTCCTGTTTGGAACCACTCAGATTATNNAATCCAGTTTTTAT
AATCTATTCTATCTCCAAACAGGACAGATTACGGTGTAGATTATAAAAACTAGATGGACA
GATTATTAAAAGCTCACAATCT