Contig Data
morexGenes
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Map Locations of contig_1581324 (3419 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1581324

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_18637 1 739 bp MLOC_18637.1 Available Available LOC_Os06g05190.1, FRAME:-1, EVALUE:6e-23, 13106.m00500 protein BRCA1 C Terminus domain containing protein, expressed
MLOC_18638 2 1577 bp MLOC_18638.1 Available Available LOC_Os06g05190.1, FRAME:-2, EVALUE:4e-21, 13106.m00500 protein BRCA1 C Terminus domain containing protein, expressed





CDS Structure of MLOC_18637






CDS Structure of MLOC_18638






Contig Sequence (3419 bp)

>contig_1581324 3419 assembly3_WGSMorex_rbca.fasta
CACTACATCAACTGCGTTCTTTAACGCTTCCGCTTAGCTATCTACNNNNNNNNNNNNATC
TGATCTCTCCTCTCGTAGATGCTCATCACCATGGATAAATCTTGTATGCGCGTAGGAAAA
TTTTTGTTNNCCATGCAACGTTCCCCAACATTGGATCAGGCTGTTCACACCTCCCTGTAG
TCTGCAGACACTCGTCTTGTTCAGCAAAAAATGGAGAAGAACTCAAGTCTCCATCCGCCC
CAATATGTAAGATCATTTTTGACAATGAAGTTGATTAGTGCACAACATTCAACCAAAAAA
CCTGACTGACAATACCACGAGAAAGTCAATCAAAATCACCAAACCAAAAAAGCTTATCAA
AACAGCAAAAAGAACCCCCAAAAAATAGAGGCTTGATCAAGAACAGAGCACAAACTCCAC
TGAAATTCAGTGATAATAAGACTGTTCCGATTACTGTCGGCCATACCATGCTCACTGATA
CACAATACTTCCTCTCCTCTCCTAAAGAACTTCTCCTAACCTTGCTACTAATCTCTGGTA
ACTGCGTGCAAGCGAGATCAATCTCTTCCCGCGTCATTTCGATCATATCATCACTATCGT
ACTGAGCGTCGTCCGCTCCGGTCTTCCCGGGATGCTCCTTGCCCTTCTTGTCACCAATGT
CCATTTGGGTGAACACAACCTGGTAGATTTTCTTGCATTTGGTTGATAGTTGGGTGAGTT
GTTCTTTAGACAGGGAAGATCCCTCTCCAGCCAAACGCACTAGATCATCCACAACATAGG
GGCAAAGCTCCACTGCTCCACCACTCCACTGGTATCCTACAAGAGAAATTCGAACATGGT
CAACTGAGAATAGAGCACATTTCGAGTAATATACACAACATGGGTTAGAAAATATGTTTC
GTACATTGGTGTTCACCATTGCAAATATAATCAATAAGACAATGGCAATTTGACACAGAT
ATCAACGATTGGCACCTAGGCAACCAACATTTCTTTGTTTTCAGGTTACTTAAGAGTTAA
GACTAGCACCTGAGTCCGCGTGTGTACTAATCTAAATCACTAAGATACAATGTTCATACT
TGGAAAATAACAGACGAGTAACTCGAAAGACCTGAGCATATCTAAATAAAGAGTGGTGTT
GCATTCCTTACATTGCCCTACTCAAGGGATTCAATGGCATCATGCAGGCAGTGATTACCC
CTTCGGCAGATATTGCCTATTGCCTTCAATTCATTTGGCTCTCGCTATCAGATAAGAAGG
CGGGCAAGTCAGATATAACAACAATCATCATTCCCATTGTATTAACATATCTAGGACAAG
TCTAACGAACAAAACTATTGGCTGCTCCACGATTTGCTAGCCACGGCGATTGGCGATGCA
TCACAATTGTTTAGTTGTTCGTTTCATTATGGCAGATAATATGCATTGCATTTTGTTATA
TTAGCCCAAGAAATGTTGATCTATTTACATTAGGACAAGTCTAATTTCGTTGGGTCGGAG
TGTTCCTCTGCCACTTGGAATTCGAAAAAATAGTACCATTGGAGAACTACTGGGCGTGCA
GATCACCTCTACGATAGCCATACATTAATTGTAAAAGTACTTTATTACTACATACCAACG
CTGAGGCGGACATAATTAAAGACTGAGACAATAAGGGTGCTTGAAAGTTGAAATGTAATT
TCATCACCATCACCTGACAAAGGATAAATGTGATGTTAGAATTTAGTAAGGTGAAAACAA
GGCTAATAGATGCCCCACCCACCTTCAAGATGTGTAGAGATAATCCTTTCCCTCCCTCTA
TATATACTACTCCATCTTCACTTGAGTTAGCAACATGCAAACCCTATCACCATTCCTTCA
TCCACGCAGTTCTACATCACAATTATTTGATTTGAATAGTTTAGTATAGTAAAGAGGCTG
TATTCGGCACAAACTTAAGAGAGGATGGATTGCCAGAAAATCAAAATTTGATTGAGAACA
CATATGAATAGGAAACACCGGGAAAGAAGCAAATGTTTGCCATGCATGGAGATAAACGTA
TTGCAACTCTCGCCCATGCCCAGAAACTTGTCCTAGTAGTGGTACAACTCTATTGCGTGC
GAGGTGACAGACAACACCATTTTATACAAGTAGACATCTCCAGCCTATTACAGTTTTGGC
GCAGAGTTCTTTACGGTGACAAATAAAGCTTTGACTCGCGGTGTTGACATTGACAACATT
CATAGCTGCAATTATGCTCGGAACTTTCCTTGTATGCCGTCATGATGCACTGATCAATGG
AGCAGGCCACCCATTGGTTCATTCAGGGCGTGTGTGTCTGAGATTGTATCGGTCTCTTCA
TTCAACCCCATCCTCGTGCAAGTGACTTATCACTCTGTTTACACCTCCCTGTAGTCTGCA
GACACTCGTCTTGTTCAACAAATAATGGAGAACTCAAGTATTCCATCCGCCCCAAAATGT
AAGATCGTTTTGGACACTGTAGTTGATTAGTGCACAACATTCAACCAAAAAACCCGACTG
AGAGAAAGTCAATCAAAATCGCCAAACCAAAAAATCTTGATCAAAACAGCAAAAAAGAAC
CCAAAAAAAGAGAGAGGCTTGATCAAGAACAGAGCACAAACTCCACTGAAACTCAGTGAT
AATAAGACTGTTCCGATTACTGACGGCCATACCATGCTCACTGATACACAGTCCTTGCTC
TCCTCTCCTAAAGAACTTCTCCTGACCTAGCTACTAATCCCTGAGAACTGTTTGCAAGCT
GAGATCAATCTCTTCCTCCGTCATCTCGATCGTATCATCGCTGTCGTACTGAGCATCGTC
CACTCCGGTTCTTCCGGGACGCTCCTTGCCCTTCTTGTCATCACTGTCCATCTGGGCAAA
CTCGGCCTGGTAGATTTTCTTGCATTTGGTTGCTAGTTGGGCGAGTTGTTCTTTAGACAT
CGATGATCCCTTTCCGTCCAGCCGCACTAGCTCGTCCACAACGTGGGGGACAAAGCTCCA
TTGCTCCGCCACACCACTGATATCCTACAAGAGAAGTTTGAAGACGCAAGCTTTAGAAAA
CATGTTTAGTAAGATATACCACATTTCTGGTAAGATACACAACAGGACTTAGAAAACATG
TTTGGCACAATTTGGTGTTCACCATTGCAAACATAATCAGAATAAGTCAATGGCAATTTG
ACACAGACATCAACAATTGGCATCCAGGCAAGTAGCATTTCAATGTTTTAGGTTACGTAA
GACTTGCACCTCGTCTGCATGTGCTAATCTGTTGTTGATGATTGAAAATAATTGGCAAGA
AACTCAAAAGACCTACATATCTATATCTATACCTAATAATAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCCGCGGTATTTTTATAAAAAAAAACCATGTAATTTTTGTTATTCAACC