Contig Data
morexGenes
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Map Locations of contig_1580929 (4812 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1580929

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_18541 1 1136 bp MLOC_18541.1 Available Available None
MLOC_18540 1 682 bp MLOC_18540.1 Available Available LOC_Os01g53730.1, FRAME:-2, EVALUE:5e-16, 13101.m05631 protein expressed protein





CDS Structure of MLOC_18541






CDS Structure of MLOC_18540






Contig Sequence (4812 bp)

>contig_1580929 4812 assembly3_WGSMorex_rbca.fasta
CGGTCAGGAAAAACTTCCATTTTGCTGCAAATGTTCATGATGAACTTATGAAGTTCCTCG
GAGACTTACTTGACGGAGAGCTCTGCCTTCATCGACGACAGATCGTAGACGCCCTCTGAA
ACCAGCCTGCGCGCCGGCGGGGAGGCCGGCACGAACTGGTCCTCGCCGTCCGAGAACCGT
GCCTCGTCGTCGGAGTCGCAGGAGAAGGAGGAGGAGGTCTCGAACAGGTCCTCGTCTTCC
TGGCGCGGCTGAGGAGCTCCGGCAGATCTGCCCATGGCTGGTTGCAAGTTCCTCGGCTTC
CGGTAAGACAATGAGCTGCTGTCTATGGATGTAATATATTCTTTCTCTTGCTGTTGCTGT
TGCTCTTTGCTTGCTCTGTTTCACGACCTTTACCTTCTGGCAGGGGGGCGGGCATATATA
GAGCCCCAGCCAGAGCAGAGCCGATTGGGATAACGCTCGCCGTCGCGCTAGTGCGCTTTG
ACTAATACTCCTACTCGGTAAGGAGTACTACGAAACCGAACGCGATTTTGTGAAAGTCCG
GTGACGTCACCGTGGGTTGGGGTCCGGCGTGTTTGCAATGCGCGAGTTAGGTTTGCTTGG
ACACCGGTGACTTGGACCCCATGAGCACGGGGCCATGCCTTGGTCCCGTCATTTTTCTTT
CGTAAATAGAAAAACAAAACAAGAGTGGTATTAAGTTTGTTGGCCACTCCCACCCACATG
CCTCTGCTTTGGCGGATTCTGCCGCCCGATCCGATCTTATCATCTTATCTCCGTCTCCTC
AGTTTGTTGGCCGGTTTATTATATGATTTTGTTATCCTTTTGGGAGAGCTGGTCTGTGAG
GCTGACATCTCGGACCGTTGGCATGCTGTGGCGGGGAAGAGACGGTGCCTTGCAAGTCAC
CGTTTCGATCGTTTATCGACGGACACGGACACGCGGCGCGCTGCCGCTGGGTTGTTGCCT
CTCGTTGGGATTGGGAGCTGACTCGTCGGTGCTCCTGCTAAAACCGATTACTACTACTGT
ACTCCTATTTGGACAGCCTGTTTTGAGGTGGTAAAGCTTGGCTTTGACAAACATGTGGTT
CCGAACAACTCTTATCAAAATCGTACCGGAAAATTATACCCGTATATGCTTCGTAATTGG
AACCTCTATCTAATCGACTAGTTACAAACACTGATGTCCATCCGCAAAAGAAAAAAAAAT
CTCAGAGGACCCAAACCATTCTGCAATACTAGTACTGTAGTAGTTTCTGGAGACGCGAAG
TGAAATTCGTAGGAGGTTTCAAGTTGGAAAAAATCTGGTTGAGTGAGCTGCCGTGGACCG
GAGGCTCCTTCCTTGGCTGAAGGGGCACTCCTTCAACTCCCCTTCCCTTGTCGAAGGGAC
ACGTGTGTTTTTTATACCTTTCAGGTTCACTACTCCACAAACTCATCCTTTTTTTGCTGG
AGCGCTGCGTGCCCACATAATTTGACGTCTCGACGGGGATGCGTAAAATGAGATTCCGTG
GACCGGACGAGAGTTTGGTGATGACACACACACGCGCGCGCGTGTTTGGTTTTCCGCGTC
GCATTTGTAGCGCACCATTCCCGTTCCCTTGGCTTCCATTGCACGGGATAAAAAGGGAGG
GGGCAGCGTCCGTGTAGAGTAGCTCTCGAGATTAAAAGTGGTGTCGTGCTTAACAACCAT
TTATGGTTTAAAAGACGCACGAGATAAATGGTGCATTTCAACGTCACCGGGAAAGTGGGA
AGCACCATCTATATGGAATGCATTATTGTGGGGAAAGGAGAAGTATGTACTCATCAACCT
CCTGCCATCAGTTTCTTCGGGGCCTTAAGATATAACCAGGAATTATTGTTGAAAACTACG
GACTGCTGTAGTAATGAGTATCAACCAAGGACTGTAGTACCAAAAGAAGTGAAACTGATG
AGCTCTGCGTAAGTGGACACCCGTCCGCGCGACTAGTACAGGTGGCAAGAGCATGTTCAC
CAAATGGGAAAAAAGACGACAGCTCACACGTCTGCCATGGCACGAGCACCGGTGCCGGGA
GACACGGCAGCTGGTTTGCTGGCGCAACGAGACCGGCGACAAGCTTTCTTCCTCGTGTTG
CTCCGGAGGCAGATAAAACGGTGTTTTGTGTATTCCGTGTTCCCATGGCTGCCTGGTTTG
GACTCCCACCGACGCAGATGCCCAGGCAGGGCAGGTGCGCTTGCTCACCTTTTGTCTAGG
GGGAGCAGCTAATTACGTTCGTGTCCTAATCTCTGTGGCAGTAACCACTAAGCTTAGTCA
AGTAAGGCTGACTGCCAAGAATCCGTGCTCCCTGATCCTTATCCGTGGGTGGACTTGTTC
AAGCTCGTGGCGCCGGACTTAGTATAGCTCGTAGATTTCAAAAGTCGTTTCTGGTGTGGC
CTATGAGTCTACGATACGAAGTGGGTGCGTCGTCCACCGTGTCTCGCTCCAGGGCGAACG
AATTCCACGACTGCTGTCTGTGTGCGTGTGTTGGTTGGAAACCCTCGGACACGTTCCATA
ACCCAATCGATTGATACGATACGACCCTTCCACCCGGCCGCCTCTCTCCGTCGTGGGGAG
TCAAATCTGAAATCTTCCCCAACGCGTCCATGGAGCAGACGGCCGCTCTGACCTGGCCGG
GTCGGGTGGGGTGGGCGGCTCGTGCGTGGAACATGGGGTCGACGCCTCCCGTGCCTTCTT
CTATCCACAACACACACACGGGAAGGCAGTTGCAACCAAACACGCCCGCCCAGACCCATC
ACCCAAAAGACGCCTCCGTCTTATACAAAAATATCGTCGGGGAAGCGATAAGGGTGGGCG
GCATATTCCTCGGCAATTCGCTCCATGATCCGTGGCCGGCCCCGGCCCGGATCCCGCGGG
GATCCAACGAGAGCGACGGCCGCGCCCAAAAAAATCATGTGCCGCGGTCAGGGGTGGACC
GCGCGAGCAGGGGGGAACGTGGTCTGCGCGCAACGGGACGAGCGGCAGCATGTGGAATTC
CATCGCCGGCCGGATGAGGCGGGAATCATCGGATGCGCGTCGCTGTTGGTTGCTCGATCG
GCGTGGCTTGAGACGCGTGGCCGCTCGTCTCCCCGGAACACGGCGTCGTCGCATCGGATG
GGATGGGATCGGGTCGGGGCCGGTTTTGTGTGGCTGCGGGCGGTGGCCTGGTCGGTACGC
GAGCACGACGCAAAGGAGAGAAGAGACCGGGTGTGCTTGGCGTAGATCGCACTAGCTTTG
TGTAGCTCAGGCCGGGGAGGCGTGCAGTTTCGCCCGGTCTCTGCTCTCGTTATCGTTATC
TGGCGGCCATGCAATCCGGCCCAACTTTGGTCTCGTGGACCTGTGCTCTCGGAAGGAACC
AAGGCAAGCCGTTCGAATTGATTCATGGTTGAGGCTGGCGATGGCGAGTGCATGGTGCGT
GCGTATCCGGCACACCGCTATCGTGTGCGCCGGACGTCTTTGCTGAGCAGAGTCTGTTTC
GCCTGCCTACTTGACACTGTCGGAACGCAAATGAAAGGGTTGATTAACTTCGGCACGTAC
GTGCTTTGCGCCAGCGGACTCACTAGGTAATTGCATGCAGATAACTCATGTCGTGTTACC
CAACACGTCGGAAGGTGCACGCTTCCTTCACCTGCGCCAAATTGTTGCCAAGCTGCCGGC
GGTCGGTTGGCGGTTGGCGCTCGGCGTTGCCTTTCTATTTCTGGGTGACGAGTTTACGTA
CGCGGCCACTGGAACTACCGGGAGGAGAGGCGTCTCCTCGTCGTCGTTGTGGTGGTGGTC
ATCATCTTGCTTTGTATTTGCGGCGACCGAGAATCGTCTCGTCTTACCGGCCGTTCTGCG
GCCAATGATGTGGTCTGGTGGGTATAATGGAACAGATTATAAGATTTAGCATCCCCGTCC
ATTGGATTTGGCGCGGGAAGCTGGTGGCCGACTGCCGGGAGTTGGAGCTTGGAACGCGGC
ACGGCAAATTGGCCTTTCTATATATTTTCGGATGGTCTAGGCTTTGCTGGTCAGAGGCAC
GGATACTTGGATAAAGTTGTTTTGCTGCTATGATCATGTCACATGGGTAGATAGATATGG
GAGATTTAGACTATATTTTCATGCATAAACACCGTGGACGAGTCTTCTTTGAAAAAAAAA
AGAGGTGAAGAAAAGAAGAACCGTGTGGACGAGTCAAGCAACAACAGTCCAAGACGAATG
CATAGTGGCGGACGGGAATGGGAATGGGACCTTCGAGGAAGAGAAACATCAAGGAAAATG
CAATTCGGCTATTGAAGCATATTCTCCTTCGCGTTATAAATGTACTCCCTCCGTCCAAAA
ATTATTGTTTTGAATTTGTTTAAATATGGATGTATCTAGTCACCTTTTAGTATCTAGATG
CATTCATATCCAGAAAAATTCAAGACAAAATTTTTAAGACGGAGGAAGTATTACGCAAGT
GTTAAAAAAATTAGAAAAAAAAATCGTGTTCATTGTCACACCAAAATGCTAACCCTAAAT
TTTTAGGGGGTAATCTTAGGCATTTTGTCTTGCACAAAATAAACAAGTTGAACGCCAAAT
GTGTTGGGGGATAATCCCGGGGTAGGCCCATCAAGCCTGTTCATTCATTTCCGGTCCAAT
GGACATGAAGGCGCGGAGATTCTCAAGGCCCAAGTCTTCTGACCGGCTAGGCATCACCTG
ACGGCTGGGAGACGAGGAGCCCACCTGTCTGGGCGCCCAGGCAGCCCCTGTCGGCTGGGA
ATGAGGCGTGCCGATCACCCCCGTCCCACCGGTCCGTCCATTCGAACGGCGTCAGCCACA
ACACCAGAACCC