morexGenes - Barley RNA-seq Database

Contig contig_158089
Source Contig contig_158089
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_158089 (8007 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_158089

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18524	4	5815 bp	MLOC_18524.1	Available	Available	LOC_Os03g15880.5, FRAME:+3, EVALUE:0.0, 13103.m01870 protein coronatine-insensitive protein, putative, expressed
MLOC_18525	6	3644 bp	MLOC_18525.4	Available	Available	LOC_Os03g15890.2, FRAME:-3, EVALUE:3e-40, 13103.m01871 protein RNA recognition motif containing protein, expressed
CDS Structure of MLOC_18524

CDS Structure of MLOC_18525

Contig Sequence (8007 bp)

>contig_158089 8007 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCTCCTTTCCCTTTTCCCTTCCCACTCTACACCCGGACGCACGCGCACGGAC
GCCCTCCCCTCAACCTCATCCCAACCCCCGTTGAAATCCGCGGCGGGCGCAGCGCAGGCA
GATCGGGGTCCTGCTCCCGGCGATGAGCGGCGACGAGCGGCACCTGGGGAGGACCATGAG
CTTCGGGATCCCGGACGTGGCGCTGGGGCTCGTCATGGGGTGCGTGGAGGACCCCTGGGA
CCGCGACGCCATCTCGCTCGTCTGCCGCCACTGGTGCAAGGTCGACGCGCTCAGCCGCAA
GCACGTCACCATCGCCATGGCCTACTCCACCACCCCCGACCGCCTCTTCCGCCGCTTCCC
CTGCCTCGAGTCGCTCAAGCTCAAGGCCAAGCCCCGCGCCGCCATGTTCAACCTCATCCC
CGAGGACTGGGGCGGCTACGCCTCGCCCTGGATCCGCGAGCTCTCCGCCTCCTTCCAGTT
CCTCAAGGTGCTGCATCTCCGCCGGATGATTGTCTCCAACGACGACCTCGCAGTGCTCGT
GCGCGCCAAGGCCCACATGCTCGTATCCCTCAAGCTTGACCGCTGCTCCGGCTTCTCTAC
GCCTTCCCTTGCTCTCGTCGCCCGCCGCTGCAAGTAATTTCTCCCCTCCTTGTTCCGGTT
CACAAATGATATGCATGGATGCATTAGCTCGTTTATTATTAATTATTGCAGCACCTCTTT
CTTGTCCTACGAATTAATTTCTAGTTTCAGTTATCCTAGTTAGTTTTTCTCTTCTGAAAT
TGTGTTTTGTTCTATTTGGAAATGGTTGGTGGATGGGATGTTTGTAAAGCGAGTATATAT
AAGGTGTTCTTTTGTTCATTTGGGAAGGGGAAAAGTAAGTGTAGCGTCTCACCTTTTCAT
GATGTAAAACATCGTGGCACTCTTTGTAATTTGGGAATAATTCTAGCTTTGGAGCAGGAA
TTAGGAAATCTGGACTTTAACTGCCTTGCTGAATTTGGGACTTTGCTTAATTGCTTATAC
TTTCTTAGAGAACTATGATACTTGGCAGAGATAGTTTTGGAAAGCAGATTATTGAAATGC
TGTTGTAGAAGTTTAATTAGACTGCAAGAGCATACATTCATAGGTTACTGGTTTAATTAA
TCATATTTCTTGTCATGTGCAGGAAACTGGAAACGTTGTTTCTTGAAGAAAGCTCCGTTG
CTGAGAAAGAAAATGATGAATGGCTCCGCGAGCTTGCTACCAGCAATACTGTCCTTGAGA
CGCTGAATTTCTTTCTGACAGATCTCAGGGCATCCCCTGCACATCTTCTCCTCCTTGTGC
GAAATTGCCGAAGGCTGAAAACACTCAAGATTAGCGACTGTTTCATGTCTGACCTGGTCG
ACTTGTTCCGCACAGCAGAAACACTACAAGACTTTGCTGGTGGTTCCTTCGATGATCAAG
ATCAAGGTGGCAATTATGCTAACTACTATTTCCCTCCTTCGGTACAGCGCTTGAGTTTGC
TCTACATGGGAACAAATGAGATGCAGATATTATTTCCATATGGCGCCACACTCAAGAAGT
TAGACCTTCAGTTTACATTCCTTACTACAGAGGATCACTGTCAATTAGTCCAGCGCTGCC
CAAATCTAGAAGTTCTGGAGGTATGTCCTGGCAAATTATTTTAAATGTTTTCGCCATATT
TCCTTCCTGGAGGTCGGGTAGTGGATATGCTATCTCAAACGCGTTTTGTTGATAATTTTT
TGTCTTCCAACAGGTGAGGGATGTGATAGGAGATCGAGGGTTAGAAGTTGTTGCACAGAC
CTGCAAGAAATTACATCGACTCAGAGTCGAGAGAGGAGACGATGATCAAGGAGGTCTCGA
GGACGAACAAGGTAGAGTGACACAAGTAGGATTGATGGCTGTAGCTCAAGGCTGTCCTGA
TTTGGAGTACTGGGCAGTACATGTGTCTGACATTACAAATGTAGCTCTTGAGGCCATTGG
TACGTTCAGCAAAAACCTGAACGATTTCCGACTTGTCCTGCTTGATAGAGAGGTGCATAT
AGCTGACCTGCCACTTGACAACGGGGTTCGGGCTTTGCTGAGAGGTTGCACCAAACTCCG
GAGGTTTGCATTTTATGTGAGACCTGGAGCTCTATCAGATATTGGCCTTAACTATGTTGG
TGAATTTAGCAAGACCGTCCGCTACATGTTGCTTGGTAATGTCGGGGGATCTGATGATGG
GCTGCTGGCATTCGCACGAGGATGCCCAAGCTTGCAGAAATTGGAGCTAAGGAGTTGCTG
CTTTAGTGAACGTACATTGGCAGTTGCGGCCTTACAGCTGAAGTCACTCAGATATCTATG
GGTGCAGGGATACAAGGCATCTTCTACTGGCACCGATCTCATGGCAATGGTACGCCCCTT
CTGGAACATTGAGTTTATTGCGCCAAATCAAAGTGAGCCTTGCCCAGAGGGTCAGGCACA
GGTTCTGGCGTACTACTCTCTAGCTGGGGCAAGGACAGATTGTCCCATGTCAGTAATTCC
CCTCTATCCGTCAGTCGGAAGCTAAAAAGACCATCAGTTTGACTGTACATACATGTTTGA
TGCCAGCAAAACCCACAATACGGCACATAGGGACATTCCATCCCACAGTGCCATTATGGA
ACTGAAAGCTCGACTAAAAGCGACCCCCTCTGAATTGTCTTCGTATTTGAGGGGCAACAT
TCCTGGGTAAGCTGCTCATCTGGCCAACATGGATATCTCTGTGTACTACACCCATTTTGA
CAAGGCTCGGACACACATTTTCTAATAATGTGCCCAGTTGTAATGGCATTTTTCTGTTCT
TGAACCTTTGCCCACTGTATTGTTGTTCTACGAACAGTATTCCTTTAGTTGTTGTACCAT
CTGTAAACCTCTCTGCGCAATGTTATGACTATCTTGATATTTTGCTGTGGCTTGGCCTCA
GTTTTTCTGGTCGCAATTATCCGGCTTCTCTTAATCTGTGGCTCTGTATGGTGAACTGGT
TGTTATAGGCGTGTGAAGTTATCTGGTACTATCGAGTGGTGACCTTTTCTTTTTTGCATT
GAGATGTCACTTGCTGTGAAATTTTACATGATTTCAAAATACTTATCGTGAAAGTCTACA
GAACACAGAGATTCTGATATGTAAGGTTTTGCCAGGAAGGAATTTAAGAGAGGACAGAGG
AGAAGGTAGAGAAAGATATGCTTTTGCACAGGAAGCAACTTTAGAGGATTGAGGAGAGGG
TAAATACAGTGAAAGTGTATTCAACTTGTCAAAGAATAATAAAATGAGGTTTGAGTTAGA
GATCTTATAAACAAAGGAAAATTGCAGTATCGAATTCCTATAGAAAAATCCGCACTGGGT
CATCTGAAACAAAGAAATGACCTCGCCAATATTTATGAAAATTTCTGCGTTTTTTCCGTT
GTAGAAGTATGCTATAAAATCCTTGTGGAATAGGCAATCTGTAGGAAATTTTCTGCATTT
TTCTCCTATAGTATGGAAGCAGACTGCAATTTAAGATGTTAACGATGACGAAATACAGCT
GCTTCACTAGGTACACGATCATACCATCCACATTGTTTACAAACATCCAAAGTCATCAAG
GCACTTTGTAAACCATCAGGTGCTTGATGAGGTTGAGCGCTCCCTGGAGACGGACCTCGA
GCATGAACTGCGGCTGTGCGCATAGCTTTCTCTAGAACGCCTCTTCGCAATCGCAGGTGA
CCTGCTGCGCGATGCCTTGCTTTCAGCATATCCTTTCTGCGGAGAACAGCTCCTTGATTC
TTCTGACGCCAGGGAGCAGCTACGGGAGTAGCTCCTGCGTGGTGATACGCTGCGAGAGTA
ACTCCGTCTTCTGTTCCTTGGAGAATAGCGCCTGCTGTAGTATGCTGAAACATAACGGTC
ATGGGAGCATGACCTCCGCCTTCTGTAACTGTATGGGGATCTTGAACGGTGGCGATGACC
ATAGCGGGGTGAGTGACGCCTGTCGTAGGGTGAGTAGGATCTACGCCTGTGGTAGGGAGA
CTCCGACCTGTCGGAAGGAGAGTATGATCTCCTTCTGCCATAGGGAGAGTAGGATGGCCT
CCTTTCATAGGGGGAGTAGGATGGCCTCCTTCCATAGGGGGAGTATGATCTATGCCTGTC
ATGACGAGAGTATGATCGTCCTCTGCGATAAGGAGAATAAGAACGTTCTAGCTCGGGCGG
GTAGCGTGAGCCGTAACGGTCTCTCCTAACAGGTGACCTGCTTCGGGAATACCTCCTTCC
TGGTATCACCATATAATCAAATGTCAACAATCATATGTGATATGAAGTGTCATCATGCTC
ACTTTCCAGCATATAATTCATGGTACTGAGGTGTCAAAAGATAAATCATGTCACAGTAAC
TTACGACGCGATGATTTGCTGCCAAGGTACCTTCCCGGTGTTGGGGTTCGACCTCGTCTT
CTCTTTGCCTGTGGTGGAGAAGGGGGCTCCAAATCAGTAATTGTGTTTTATGTCAAAAGC
AAGACTGGATAAATTATTGGGGATCTGAACTACACAAATAATACAGAAAAATAAAATAAC
GGTGGGCGTACAACCCTTTGGTTGAGGTAGCATTGTTTCGATCTTAGGTTGTGTATCTTT
TGAATTTGATGCCATACAGCTGCGGGCATCAACCTGCTGCTGTCAACAAAATCTTCAAAC
AAGAAGAGCACTCAAATATTCAGCTTGGAAGGCTAATCTGTACATAATAGTTCCACTCTA
TATAGAAGGAGAATGGACAAATATCAGAGTTAACAATCTTTTGGCAATACCTTCTCAACA
GTAATGACACGACCTTCCAGCACTGAACTGTCGAGATATTTGATGCAGCGTTCTGCCTCC
TTAAGATTGGCCATGGTAACAAATCCAAATCCCCGTGATTCCCTTGTCCATGGATCAAGT
ACAATACTTGCATCAATCACCTGTGGCACAGCCAGCAAGACAAAGAAGTGGAAATGTTAG
CAATCTTCTCATATGCGTACACTATTTTCCTCAGCAAATATCTCCATAAAGATTACCTCT
CCCTCTGTAGAGAAATGCTTCTCCAGATCTCGATCAGTTAGACGAGATGATAAACCAGTC
ACAAAGAGATTGTTCCCAGGGTTCTCAACATCACTCGAGTCCACACTCCTAACACATTAC
ATGGATATCATGTACTCCTCAAAATTAGAGCCAGAACTGCCTAGACTCCAAAAATCATAG
AACATGGACACAAACATAATATTAGCATTTCTGAGGATAAAGAATGTTTACCTTGAACGA
CTCCTGTACCTCGAATACGACATCTGCAAGACATACAGGCAAATGAATCAATACCTACCA
GAGGACTCGTATAGAAAACACAAAGAGAAAGTAGCATCTAACTAAATTTCTAAATGTGCC
ATGACTTTGTAACATAGTATACCGCATAGCCCCAATAGATCATACAATTATCTAATTAAC
CTGACCATAGAAGCTCCGATCACTGCAATAGTTCGATTTCACAGCATGCAATCCACCATC
AGTTTACACTTCACAGTGTCGAAGATAAATTCTTTGTCGCAGCCATGAATTAATCGTTCG
TGTTCTTGTGCATATGTGGTCATAGATTGTTGTGTGTGCAAAAGCTTGGAGACATAATAC
ATAGCTACAATTATTCAGTTCACTGTTAGAGGCTGTCTGTTCCCGTAACAGTTTCCTTCC
CAACAATTCAAAGTGCCCGTATAAGTCACGCGGGTTCAGTAAATCTGTTATCCTCATCGC
GTTAGGTAGTACAATTGCAGTCCAGATGAAACCACTACGCACAGAACACGAATTGAGGGA
ATTCTCGGTTTAATTTGCTTTATGTCATATAGATCTAGCGCCGATGACGGAGGCACCTGC
CAAGGCTGGTACCTCAATCTGATCTGAAGATGGACCAGTGAAAGATGGCGACGACGACAC
ATGTGAGTGTGTCGGACCGGTTTGTGTCCTGGATCCGATATGTGGCTCGGTCAGGGTCTT
TGGCTTTAGATGTTAGGATTAGGTGAGAGGTCTCGATATTTGGTCCAGCTTGCACCCCTT
CATCATATGGATAGGAGTAGTGACAGATGTTGCTAAGACGGCGGATTCAGTCATATTATT
ATACTGCTTTATAAGGTCCTCAAGAATAATCAATAAAATGGCCGCATGCATCTCCCAAAT
GCAGAGGCGGGGTCCTCCTTTTCTAAAAAAAAATATAGATCTAGCGCATTTGCGAAACAG
AATTGAGGATCAATCAGCCTCCGACCCCTGACATACGTTTTTCTACTGGCAAGTATTTGG
TGTCATGGCTCTCTACGATCTGCGGGTCATGAGCTGTATGTGCAAAACTATCGCCAAATC
AAACTGCTAGAACAGAAGACAGAATGAATTCGCAGCGCCCTTCACATGCTAGTATCATCA
TGCTACTGACGAAACACGAGGAAGAAGGCGAGGAAATACCTTTGATTCGTCGCCGCTGCG
AGGCCTCTCGAGTCTCTGTCTTCGTCTTCGCCTCTGCCTCCGTCAGTTCCGACCTGCGAC
CACCGCCTCTCTTTTCCCGTTGGATGGTGCACGCGCGCTCGTGTGAATAAATAGAGAGGA
CCTGCCGGAAGGTTCTGGAGAGGGCCGGACGCGAGACTTTCTCAAATCCGGTTGAATCGG
CTTAGTGTACGCACCGCACGGCACCACCTTACGCTTCAACACTTGGCATCTCTTTCTGCC
ATCCGTTTTCCTTTTTCTTCATCCTTTTTTCTGCCAACTTTTCTAAAGAAACCCGATATT
TGGAGAACTATTTTTATTGGGGAAACGTTTCTATCATGTCCACCGGTTAAACCGTTGCGT
CGGACATATATGGGCCACGGGATCTATCGTCATCATCTGGATATCAATAACGCGCATCCT
TCTTCTTTCTCCTTCACGCGTAGGTCCCCACGCCGTATGCCATGGCGTCGTCGTAGCTCC
GACCACCCGCGCACAACGGCGGCATCGCAGCTCCTCCGTCCACCCTGCACCACCGGTCGC
CGCCTTAACCCTCTTGCCCCATAGATCTCCATGTCCCTTTCTTTTTCTCTCTGATTACCA
ACGCTCGGGGAGCCTCGATCCCTAATTTCAGACGCCCATCCCTCATCCAAGATGAACATG
ACAACACGCAACAGTCAACCGACGACATGTCGGAAATGCTTGAACCGGCGCCCCCGTGCT
ACAACCATGGCGACTAGGGGACAACTGCAAACGGGGTGCCAATGCTATAACTATGAACGT
AAAAAGCTACATCTAGTAAATAAAAAAGCTTCATCCCGCATATGAAAAGCTTCAACCGCA
AATTGAAAAACCTTCGTCTAACGACTACAAAAGAATCAACAGTTTTTGAAACACATGAAA
TGTTGCAACCGTTTAAAAAAAGCTTCAACGAGAGTTTTTGAGAAAGCTTCAACCAGCTTT
TGGAACACATGAAATGTTGCAACCGTTTTAAAAAAAGCTTCATCCGTCAGATGAAAAAGC
TTTAACCATAGCTTTTGAGAAAGCTTTAACCAAAATGTTTTGCAACTAGTGGCATCATTT
TTTGTTGGAACCGGAACAACCGGCGGCGTCGTTTGCTACAACCATGACTCAATTTTGTTG
CGAGCATGGATGCCGAGCTACAACCGACGACGACTACGACAAGATGTTTTTGCTGCAACT
GTATTTATTCTTTGCTACTACCAGCATCTTGTTTTGCTACATCTGTTGCTTTTCTTCGAG
GACGAACGACCCACGAGACACTTCAGTCGGGATGAGATGTCTGTGGTCGGTTTCTGCGAG
CCCCTTCGACATCGACGAACGCGAGGACGAGGGCGGCTATGGGAGCGGCAACGAGCACGT
CGGGGACGACGCAACACTTCGAGCGGCGGGGGAGACAGGCGACGACAGGAGGTGGGGTCA
GCGGGCGTGACATGCTATCCATGATGTAACCTTATGCATGTATGATCATTGAGAAATGAT
GAACTAACAAATATTAACACAACAATA