morexGenes - Barley RNA-seq Database

Contig contig_1580816

Source Contig contig_1580816

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1580816 (1887 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1580816

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18503	6	1107 bp	MLOC_18503.1	Available	Available	LOC_Os03g16130.4, FRAME:-2, EVALUE:1e-47, 13103.m01913 protein CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MLOC_18502	1	447 bp	MLOC_18502.1	Available	Available	None

CDS Structure of MLOC_18503

CDS Structure of MLOC_18502

Contig Sequence (1887 bp)

>contig_1580816 1887 assembly3_WGSMorex_rbca.fasta
GGACGGAGGGAGTAGTTTTCATCTAGCAATGATTAATACTCTGATACAATTTATTAATTT
TGCATGGTAACTGTTAAGGCCTAATGAGTCAGTAAATCCAGGAAGGATGCAAATGAAGTC
AAAGAGAAGAAAAAAGGACCAATTACAATGCCACCCAAATTTACTTTTGAATGGTACCAT
TCATTTTCGACCAGATGTCTGTTAGATCACAGTAATACTTCTGAATACTTCACCCCACCA
AGTAGCAATACTTATGCCGGAAAAGGAAACAAGTAGCAGTAGAAGAAATAATGACGTGAG
GAAGTGCCTACTGCCTGGCATAAATTGTTTGTATACAAGTAAAGACAATGATTTGTACCT
GAACTGATTCGCAGTAACTTTCTGCACAAGTCAATGCAATCATGGCTCAACTCACAATCA
GATGGAAATCGTAACTGACCTGACTTCAGTATGTTTTTCATCAACTGATGAAGTAACAAT
AGTTTCCATTAGCACTTGTAGGCACATACTATTCCAACAATGTTGAAGTAATCATATCAT
GTTAAAAATGACATAAACCTGGATTTGACTATCCCCGTTAAAAGGTGGAGACCCAGTAAC
AAGTTGATACAAGATAATACCAACGCTCCAAAGATCTGCCTGTTCTGTCAGAAATTGAGC
AAGAAACACAAAGTCAAGAACAGGTAACAGTCTATCACAAAGCCCCACATAGAAACAGAA
GAAGAAAAAGCTCCGACCTTTGCATCATACTTCTGAGCTTGCATGACTTCTGGAGCCATG
TAAAGGGGTGAACCACAGAGTGTTTCAGCTAGACCAGAAGGTTGCAAAAATCTGCTCACA
CACACAAATACAAAATGGGTGAAACTAAAACAGATAAAGTATCATACGCCTGACATACTG
AAGTTATCTGATAGTTGACAGCTCATTCGCCGATTATTAAACCCACTTGATCAGCAGCAT
GTAGCGAAAGCCGATATGCGAGTTCATGGACGCATGTAGTAATTTTCAAATGTTGCAAAA
ACTATCTCAAAATGAAGCAGATGTAACTTTAAAGGTTGCCGGTCTGTTTTTCTTTTTGTC
AAGATTATTGCAGACAAACTTTGTATATTGCAGCGGTTTTCTCAGAAAATGTGGGATATT
TTTTCTCCAGCAATGGCACAATATCGATTCAGATTATAGGCGTTACTGCATAAATGTTTG
AACCTGATACTGCACATTTTTGCTAAACTAGGTAAATGGATCTACCAATGGAAGACGCAA
GTCCATTAAGCGTTAGGAAAGGAGTGGACTGGACAGTGTGCTACTCCCTCCGTCCGGAAT
TACTTGTCGCTCAAATGGATGTATCTAGATACATCCATTTGAGCGACAAGTAATTCCAGA
CGGAGGGAGTATTTTGCAATTGAAACTGAACACTGACCTATTAGTGCAGGATACACATCA
GTTAAGAAAGGAGCAGACCCGTTTGGCCATGGCATGGTGTCTATTCCAATATTCCGGTCC
ACATCAGTTGACATAGCGCTAGTCGCTCGGGAAAAGAAAATCAAATAACAGTGAAAAACA
AGCAGAAGCTGGTGGATCCCACAAAGAAATGCAGCGGCAAGAAATGAAGGTTGCCGTATG
TCATTCTGATGATATGTAGCATGCTAAGAGCATCACTAGTAGTACCCTCAAACCCTCAAA
TCCTTAAAAAATAATTGCTTTTTTACAGTTTGCGAGCAAAAAAACGCGTAGACTAGAACC
CCTTAACCCTCAAACCCTCAAAAAAATTTGAGGATCCAACCCTCAAACTCCCTCCCAACC
TGTAGAAGTGAGGGTTGGGGAGCGAAAACTACCCCAGCCCTCAAACCGTTCCATCGTCGC
GCGGGAGGGACTTTTCCCCGTCCCCAA