Contig Data
morexGenes
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Map Locations of contig_1580692 (5511 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1580692

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_18470 2 2860 bp MLOC_18470.2 Available Available LOC_Os04g49350.1, FRAME:-2, EVALUE:0.0, 13104.m05037 protein PPR repeat domain containing protein, putative, expressed





CDS Structure of MLOC_18470






Contig Sequence (5511 bp)

>contig_1580692 5511 assembly3_WGSMorex_rbca.fasta
CAGGCCTATGACCATATCCTGGGACTATAACCCCATCAGGAACAAAAATGCTAAAGATAC
GGACAGGTTCTAACAGACTTTTACGGGATGCTAACGCGGCCTAATCTAATTGCCCCTCCC
TGATTTTCATTGATGGGGTCGTCCTCCTTAATCAAGTTCCAACCAATCACAACTAACGAG
CCTGTAAATCTTTCGCAGAGAGCCCGTACATCTAGCATTACTGTTTTAGGAAACAGGCTA
CAAGACACCAGGCATATTTTAGCCGTATATTCGCGTGTTTCAGACACCCGATTCATCCCG
TTCTCTGCCCCTGTACTCGACGGGTAGCCATGCCTCACGGAGAGTGGTGGGAGGACTGCT
AGACGCCCTCGAGCACACGTGGGACGGCCGGAGCCACGTTCAGCTGCATGCTTCCGCCCA
CGAGCGATGGCAACGTGGAGCAGCCTCAATGGCAAGCTGGCCGTCTTCAAGCTTAGTGCG
TGGTGGACGGAGGCACACGACGTTGGGTGAAGACGTGCATGTTGGCCGGCACGGACAGTG
GCGTCCTGGCATTCACCGTGCCGACGTGCACCGTTGGCGATGAAGCCGTGCGTGTTCGCT
TCGTCTGTGCAACGTGTCTGTCACTCCGGCACTCCGCCATGAAGTAGAACGGCAACGGCA
GCACGGCCATGTCAATGGGGACGCCATGCATACAGAGCCCTCGGATTGAGCTGCGCACCG
GCAGCGTCTGGCACAGCACTGCCGGTCACCGCCCCCCATGGACGCTATTGGTTTCCGCTG
AAGATTCTATCATCTTATAGGCATCCATGTATGAACGTCAGTGTCATATTCTCCGGAGGC
ATGGCTCCAATCCAATGGTATTTATATGCGCATAATCACTCAAGACATTTTCGGCTGTGG
CTTCACGTTGCTCCGGGGCAAATTAAATTCGAAGAACGTAACAAACCCAACGTGAGCAAA
TGTGAGAAATTCAGTATCGATACAAGTTATTACATCCACCATAGGGGCTATAATACAACT
GTATGTACAAGGGTATCATCGAATCCGACATGAATGCAGGATTATTGAGCTATACAGCTT
ATCCGGTAAATCTGGAATCAGATCATTTTGGTGGTACAATGGTGCCATTTTCTACAATAC
ATTTACAGTGTCAATTTCTTCACGATTCAAGGAGCATGGAGGCAAGCAAATATTTACCTA
TTTTGCTTCAAATTTACAGAGCAGTGCCTTTCTCCAGACACCCAAATCCTCATGCTCCGA
TGCTGAAGATGAGCACCAGGAACTCGTGGAGCGTGAAATCAGGTTTTCTCCTCCACGGAA
TTGAAGTAATCCTGGAGCCACCTGACATGAACCTCCAGCCCGGCTTCTCGGAGGCTGTTG
AGAACGATCATGTACAGCCTCCTGTCCAGCTGGGTGTCCTGCACCTTCATGTCCCTGAGC
AGCTGGATGAGGTCGTTGAACCGGCTGGTTTTGCAGAACACCCCCACCATGAGGCCGGCC
AGGGTCTTGTCCACCGTCCCTCCCGTCTCCCTGAACTCCTGGTAGTAGTCCATGCACCGG
TCGAGCTCCCCCGACCGGTTGAACGCGCCGACGATGGCCGTGTAGCTCACCCGGTCAGGC
TGCACCTTGCGCCGCATCATCTCCTTCCATATCTTCTCGGCCTGCCTCGAGTCCCCGAGC
TTGCCGCGCATGTCCAGGAGCGAGTTGTACACCCACACGTTGGGCTCGCACCCCTTCTGC
TTCATCAGCGCCAGCAGCCTCGTGGCGTCCGACGCCCTCCTGATCTGCCCGTACATGGAG
ATCATGTTGCCGTACGCCACCACGCACTTGTCGAAGCCCCGGTCGATCATCTCCGAGAAG
ACGGCCTCCGCCCTGTCGCTCCGCCCCAGCCGGCAGTACACGTTGATCGCCGAGGCGTAG
GTGACCTGGCCGGGCTCGCACCCCATGGCCACCAGCTTGTCATACGCTCTGATGGCTGGC
TTGAGGCCTCTCCTCTTCACGAAGCCGTTGACGATCGTGGACAGGATGCAGTCGGTGACC
CTCAGGCCGATGTCCCTCATGTCCTTGGCCACGCCGAGCGTGTCCTCCAGCAGCCCAGCC
TCGACTTGCATGATGATCACCTTCAGGAACATGTCTGGATCTCGTAGCATCCCCTTCTTC
CACGCCTCGTGGTACACGTCCTCCGACGACGCCGTCTCTCGGGCGTCCGCCAGAGAGCCG
ATGACCGCGGAGTAGATCGCGGCGTCCGGCGAGATGCCGTCGGCCTCCATCTCCCGCAGG
CACTTGAGCGCGTCCAGGGCTCTGCCTGCCCGTCCCAGCGCGTCGCAGGCGATGGTGTAC
GTCTCGAGGCAGGTCTCGGAGGGGTACCATTTCCGAGACCTGTATTGCTTGAAGAGGGAA
GCCACCGTGTCCGGCTCGCCCAGCGCCCCGAACGCCGCCATCACGGCGCGGTAGGCGTCG
GCGTTCACCGACAGGCAGGCCGCCTTCATCCGCTCGTACAGCAGCACCGTGCTCCGGTAC
ATGTGCAGCTTGTTGTACGCCTGCAACGCCGAGCTGAAGCACACGGCAGCGGCCGGGCCC
TTCTTCCCTTCGAGAACCCCGAGCACCACGTCGGCGAGGCCGAACTTCCTCGCCTTGACG
CAGGTCGCGACGAGCCGCGCGCACGTCCGCCTCTCCGGGAGCACCCCATAGGCCATGAAA
TCTTGGACCAGATGCTCCAGCGAGCTCCACTGCTTGGCCCGGAGAAGCTGCACGGTGAGC
GCATTCATGGTCTTCTTGTCCGGCCGGAACTCGGGCTGCTGCAGAGCCCTCCTGTAGCAC
TCGAAGGCGAGCGGCTCGGTCTGCCGGTCGCTGCAGAGGCCCCGGATGAACTTGTTGGAG
ATGCCGAGCTTCGCAGCATCGGGAAGCGTGGACACCGGGGCTGCCTTGGCCGGCGCCGGA
GCGGAAAGAACGTGGAGCTCGCCGGGCAAGTTCTTGGGCTCAAGAACGGGGGAGGCGCAG
GAGCGGGAGCAGTGCAGGACGAAGGACGCGAGCTGCCGCTTGATCGTGCAGAGGGAGGCG
TTGGGCGACGTTCGTCTCGATGGATGGAGAGGGGGGAGGGGAGGCCAGTCGGAGTAGCAT
TTGGCCATGATTCACGACGGGAACTGGAGGCTGGGAATGGAAGAACGACGCTGCTCGGGA
CGAAGGCACCTTATCTTGCAGATTCCGTCGCGCTGGTTTTTACGAGCATCTGCTGGTGGA
AACTGTCTGCTTCGGACGGGTGGGATCCCGCCACGTGAGCTCCCGTGGAAATCTCACGAC
ATCCGTGACGTGGAGGTCCAGTTACCCGGCAAGTGAAAGAAGCTCAGATTTTGGGGGCAA
ACGGGGGAAGCCACGGCGGCCTCATTTCGTGGCTGGAGGGGCTTGGTCCACGTAGCTCGT
GCCCGGTGGACAGCCACCAGTTAACTTGTGATGCTACATGTCTCAAGTGTTGGCAGGCGA
AATTGGGGTCCAAGACATGTTGAAAGCTACCAACAGATTGTCCAAGGGAAAATTGGACTT
GTGGTAGTACTTGACTTCTTTTCAGTGAAAACATCACAAACTCAAGCTACTTACGAGAGC
CACAAGATTCTGCCGATGTTCTGGCGACCCAACAGCCAGATAAATTTGAAACATGCAATT
TTCATTAATACTATGTCTTTGTTTCCGGCTTTATTGTTGGGTTCAATTGATGTAGTTCAA
TAATTTGCTTCCCCATTTCGCACAAGCGAATAAATAGATAAGTTGATCCATCTCATATTT
CTGACGGTCGTGTCCCTTTGAAAAATGCACCGAGATATGCACCGGTTTGGATGGTATTTT
TTGGTTTGGTTGTCGCCGAAGAACAATTGAAGTTGTTGCTGCAATCTCGCACAGGCGAGG
GGACCGAAAGGGGTTGTGTCCTTCCCCGAGCCTCCACTCACTCCCCATGCTTTCAGGAAA
TATGCATATGTATGCTCCTAATTTTCTATTGGTCCGAGTAAAATTGTCAGATCTGGATGG
TTTAGGCCCTCCTAACATTAAATGACACATTTAGGTTTCTATGTTTTTGAGTTTCTCACT
CCGTCACTTCTGCCACACATAGTATAATGTGTTCATAGGGGGCATCATGAAACTAAAGGG
CACATCCGAGATGGTGGGGTAGGTCGAGATAATAGTGTTAGTGTCACTGTTACACCACTT
GGCGCCATAGTGGAGAAGCTCATACTCCTCATCAACGTGGTTATGAACATAATACTTCCA
AATGAAGATTGATGAGTACTCCCCACATCTTTGTCGCCTCTACCTTGGTGACTCTCGAGG
TTGGGGGAGGGGGTGAGGGACCTTCTCATGCGCCTCCTTCTTGAATTGCTACCGCTACTA
ACACGTCCGCTGGTGAAGCTCAACCAATTGCCAAGGATGATGGAGGTGCAACATGGTGGA
GCTGCTTCTCGGGACTCTAGAAGCACCATGCCTCGGATTTGTTTGTTGTCCCCTTGCCGC
CATCCCACCTGAATGCTGGTCTATCAACAACAACTACGAGTCTTCCCTTACTCATGCCCC
CCTCACCAACTCATTCCCTTTCAGTTCCAACCTCTTAAAACAATGGACAAGCCTCACCCG
TGAGGAGGAGTACATAAGAAACATGAATCACCTCTCGGTAAGCAGATACTCGATCCGTTT
ACAGTTACCAATTTTATGAAACCATCTTAAGATAATTGTCAAGCATTAAACCTTTTATAC
TCAAGGTTCTTATAAATGCACGGGTTAAGAACTCCCATACCTTTTTGCAAGACCGACACT
CTTCCTTCCATTAACAAAAGTGATTAATAAGTGAAAAGCATAAAAGGAAAAAAATTCCAT
GATCAATTTACCCTAAAATATATAATTGAACTCAAAAAGTAATATAAGCAATAGACATGC
AAACTCTCTCTCTCTCATATTACATTGCTATCTTCTTGTTTTTAGAATAATTTAAAATGA
AATAAAATAAATCTCCAAAAAAAGTACACAGATTATGGTAGTAAATAAGAAACACAAGTG
AAGAAGATCATACTAGTTGAGGAAGAAGGGGATGTCGGGACATCTGCAAGTTTAAGGCTT
TTGACCTCCTTGGTTTGGAGGGGATACATGACAACCCCAAAATTTTAATTTGTCTTGGTC
CTTCTATTCCTATCATCTTTATGTCTTCCCAAAACTTGAAAACGATTGCATGATACGGCT
AGCCCTCCAAAACAAAAATAATAAAAGCATGGAAGGGTCGTCTAAATATAATATGATAGG
GCTTCGCCTCAGATAACAAATATAGCTCTATGGCGGTGGCATAAATAATAATCATGAAAT
AGTTTAGGCGTTAGGAGGAATATATAGGAGTTGCACCTAAAGGGAGCATTGTCATTCGGT
ACATGTCCGTTGATCTTCACAGAAGCTCATGAAGCCTAGCCAGTCTGTGTGGGACCCACC
TTACCTTATGTGTGCGTTCTTTGAGGGGTATCTGTTGGGGAACGTCGCATG