morexGenes - Barley RNA-seq Database

Contig contig_1580493

Source Contig contig_1580493

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1580493 (3869 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_1580493

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18419	2	761 bp	MLOC_18419.2	Available	Available	LOC_Os05g41030.1, FRAME:+2, EVALUE:2e-15, 13105.m04347 protein LTPL67 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MLOC_18420	6	839 bp	AK249722.1	Not available	Available	None

CDS Structure of MLOC_18419

CDS Structure of MLOC_18420

Contig Sequence (3869 bp)

>contig_1580493 3869 assembly3_WGSMorex_rbca.fasta
CCGTCCTCTCCTCTCCCCCGCCCCCCCCACACCCCACCCCACCCCCGCCGTCGATCTCCT
CTTCCCCGGCCGTTGCTTCTCGCGGGTGTTCTTGGTTCTTGCGGGGATCGTCCTCGCCAT
TTTCCTCCCTCCCCCGATAGGATTGCCTTTGTTGTATTTTCTCTGCGATTTTCGAGGGGG
CGTGTTTGCATCATGCGGTTGGGTAGAGAACGATAATACTGTTTGTTTTCATCTAATAAT
AATCAATGCGTGCGTTGAGAATTTGGCGTCGTCTGTTGTTCTGTTCTGAAAAAAAAATCC
ATTTCTCCCTGATACTAGTGTATATGAGATGTCGTGCTCTGTTGTTTGTCTGTGTTTGCA
ATTAAGTAAAAGCAAGGAATCTTTTTATTGGTAGTATTATTGAAGTTTGATGAGTCAGCA
CAACAGTGTCGTCATCTTCAGTTCACCGCGGTTTTGCCAACTCTGTTTAATGGAGTATTT
TATTTTACACATGCAACTCCATTGATAGTCCGATGCTAGATACTCAGTATCTGCGTGTAC
GGGATACAGGAAATGGCTGACAGCGTTCCTATCTCGAGTTGATCTGACAATATTTGTTCC
ATCCCTATATGCTTTTCCTAATGAACATATACAAATAGTTAGGAAAACAAAAGCAGTACA
CCTGTTACACATTCGAATTTCAATCTGTTTACAGGCCCAGCTCGAAGGACGAAAAAATGG
TGAAGGATGTCCATGAGCCACCGAACCCGTGATGCCCGGAGCTGGCCGGCATGGTGGGCT
CCAACCCCGTCTGCCTCTGCGAGCTCCTCTCCGGGGCCGCCGACTCCTTCGGCATCGCCG
TCGACTACGCTCGCGCTCCCCGGCGTCTGCCGCGTCGCCACACCGCCCCTCAGCACCTGC
GCAGGTAAAAACAGCCCTTCTGCTGACTGCACCTCGCCGCTGGATTTGCTCTTCAGTAGT
ATTTTATTTGATTCAATAGTAGTATAATTTGACTAGAAGGGTTTCGAGATGGTTGAGTAG
TTCGGCTCTCCGGGGTGTTCGTTTGCCCTCCTGTGCGGCTAATTGCTGATTCCACTACTG
TCATTCACCATTTCTGGGAGTTTATTCGGTCCATTTCTGCATACAAATCTGCACAATCTC
TTGTGCTTTTACTGTTACCCTTATTCAGCAGTTATTTAGGCGGGTTTCCTTGTGGTTTTG
GTCCTTCGGTATGGTGTGAAGGACTGGCATTGCGCAGCAGCAGTGGTGGTTTTTGGTTTG
TTGCTTGTATTTGTTTTAGTTCCTTGTTCAGATTCGTTTTGATTTGCGCCTATCGTTTCT
ATTGCTAGCTCCAGGAGTCAGGGAGGTAACTCTTCTCCTTACCGACCCTGATCGTTTTGT
TGCCCTTTCCGTAGGATGTATCCCTGTGGATTATGAATTCCATGAAGCGCTTGAAGAATA
TTTGGTTTCTGAAAAATGTTGTAACCTCAAATGCGTGCCATCATGGTATTGTTATGACCC
TTCATGTAGTTTCTGTGCTGAGATTGTGAGATTCTTAGAGGACCATAAAGGCAATTCTCT
TTCAGTCCATTGCGCACGTTTTGTACCAGATTCATGATTATGCACCAAACATATTACTGT
TAGTGGTTCATTCTATTTGATATCATTTACTTTGCTATTACCTGCCATAAGGACGATCTG
TACTCCATTGTTTACAGAGATAACCTAGTAAGAAAACAACACAGCATCTCAGACTCAACT
GACCATTGTTATGTTCTATTGCATGGTTCTGTAAGTAGCATCTAAGATGAATCACACAAT
GCATTTGACTTGGCACTGTGTAATGTATTTTTAAAGTTTGACCATTTGTTTTGAAAGTTC
TACTGTTTCTTGTATTGATAAATATATGTGCACTACAGTTCATGTTTCTCCTGTTCATTT
GAAATGCATTCCTGATATTCTTTTGTTGAGATGGTAGTAAGTTTGTTCGCCCCATTTCTG
CATATAATCTGCAACAGGGTTGTGGTTTGAGTTTAGCTGTTTGTTGTTTTATCCAGGCAA
TCCTGATTCGCCATTTGTTTTGGTGGTTTCTGTTCTGGCGTTGACCCGTCGTCTATGGTT
GTAAGGACTGGCATACCGCGGTAGCAATGGTGGCTTTAGTTTGTTGCTTTGATTTGTTTT
GATTTGTGCCGGTTGTTTCTGTTGCTGGCTCCAGGAGTCTGGGTGGTAACGCTTCTCTCT
GTTACCCTTTGGGTAGGATATATCCCTGTGGATTATGACTTCCATTATAAGCGCGTGAAG
AATATCCGGTTTCTGAAAAAACATTGTAACCTCTAATGCATGTCATCATGGTATTGTTGT
GACCCTTCATGTCGTTTATGTGCTGAGTTTGTTAGATTCTTGACGGACCATAAAGTTTAG
TCTATTGCACACATTTTGCACCAAAATCATGATTATGCACCAGACATGTTACAGTTAGTG
GTTCATTCTATTTGATATCCTGAACTTTGCTATTACCTGCCATTAGGACGATCACTACTT
CATTTTTTACAGAGATAACAAAGTAAGAAAATAACACAGCGTCTCAGACTCAACTGACCA
TTGTTATATTCTGTTGCATGGTTTGTAAGTAGTATCTAAGATGAATCACACAGTGCATTT
GAATTGGCACTGTGTCATGTATTTTTTTGAAGTTTTACCATTTTTTCTTGAACTTCTACA
GTTTCGTGTATTGATAATTATATGCACTAGAGTTTATGTTTCTCCTGTTCATTTGAAATA
CACTCTTCATATTCTTTTGTTGACCAGGCTCAAATATATTTTACTTGGTTCTTTCAGGAG
GGTCCTCACCATGGATCTTTCGAGTTCACTGGCTTCAACCAGTGATGAAGAGACAAGGGC
ACTTAATGCATTGCTTGATGCTTTCAGTTGTGCCTTTTCGCTTGAAGATATAGCCAATGC
ATACTGCAGAGCAAATGGCGATGTCAACAAAGCTGGGGATTTCTTGACTGACCTTCAACT
TTCGATGCCCCAGAGTAATGAAGTTGACTCAAGCGTTGAGACCAATCTTCCCCAGTTTGG
TAAGGCAGTTGAGGAAAATTCTATGGACAACTCAAACCGAACAAGAAATCTTTCCTGTGT
TGGGAAAGCAGCTGAAGAAAGCTCTGTGGAGAATTCAAGCCAAACAAGAACACGTGAGAA
GTCACAGAAGTCTAGTGCTTCATTTGGCACTGTATCCAGCATGTTAGGTAAAGGATCTGC
CCGAGCTACTACAGCTCCTGCCAATACAGCACCAGGAAAAGGAAAACCTCTAAAGGTTGA
ACTGCCAGAGTACATGCGAGATGATTTGAAAACAGATGAATCTGATTCTGCACCAAAGAG
AGAGACTTTGAATAACAGAGATGTTGAGGAATTCCTATTTTCTATGCTTGGAGAAGGATT
TAAGCTCAACATGGAAGTGATCCGTGATGTTCTAGGTAAACTTTTCGTGCAATGCAAAGT
CATTTTATCCAATAAGTGTTGTTTGAAGCCAGATTTTTAATGTGCTAACTGCTGAATTGT
TTTTGCAGGCAGCTGTGGGTACGACATGAAGAAGGTAATGATAGATCATTGCTGTCAAGA
TTATGCACTTTCTCTTTGTTCCTGATTGTCATTAATGCGGCAGAAGGGTTTAGATTTCTA
GCTTTATGGTAGGCAGCTTCATATGCCGTATGTTTTTTGGCATGGTATTGACTTGTGCTA
TTTTATGCAGAGCATGGATGAATTAATGTCATTTTCTACAAATGATCTAGGCAAAAGGCC
AGAGAATGAGCATATTGCAGTACAAGTAAGCTTGTTGCACCCCCCCTCGTATAACTTTGT
TTAATGTATTGTATTCGGAGGTATTTAGG