Map Locations of contig_1580487 (5786 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1580487

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_18415 2 2172 bp AK363582 Available Available None





CDS Structure of MLOC_18415






Contig Sequence (5786 bp)

>contig_1580487 5786 assembly3_WGSMorex_rbca.fasta
GCGGCCGCCCCCCCCGCCTCGGCGGCCGCGCTCTCCTCGGCCGCAGGCGGCGGGAGCCCG
GCCGCCGTCGCCTCGGGAGGGTGGCGCATCCACGCCGTCGCCGGGAAAGGAGGTGGGCGC
TCTCCACTCGACCTGCTCTGTCCCGCCGGGGTTGTCGAATCCATTCTCTCCGCGCTCTTC
CCTTGCTCGCTCACAAAAATTCAGGGCATACCACCACCATAGGTGAGGCCACGGGCTGCG
AACTGCGCGCGCACATGCCTTGGATTGTGCAGCTGACCCAACGCAACCTAGCCACCACTA
GAGCCGCCCCAGATTCCTCCACTGAATTGGCCTGTTGACTTTTCTGCCTGCGAGCTTCCT
CCTAGAGTTCTGCCGCGTTCTGTTCCTGCATTACCACCACCGTTCTTTCTGCAATAGTAT
CTGAAATCCTAACACCCTAGTGCGCGGTTACCAACCTTACTTACTGTCTAAAACAAATTG
AGTCGCCATTCACAGGTCACAACAACATGAATGGAGTGGGTCTACGAATCTTTTGAGATG
ATTCTCACTAGCTTTGGTAAATTAGACATGTTTAAATCCAGCATGTACTTACCATTCTTA
ACAAACCTCCCGCCCCTTCTTTGAGTTATTAGCAATGTTACATCGCCCGTCAACTACATA
TCTGTCTGTATTGTAATGTATTGTGGAATCCAGCATGTACTTCTGTATTGTAGATGCTAC
TACATATCTGTCTGTAATAACTAAGGGTTGGTTCTCAGGTCAACTCTTACCTGCCTCATT
TTGATTTGCTTGCAGCGCATAGTGAGTTAGTTAGTGTTTCATGTGATGAGACCCTGTTTC
TTAACTAGTACTATGAATGATATACAACGGCTGTGTTTACTTATTTTACGCCTCTTCATC
AGTAGTGAAAGGTCCGATGGATACTGCTGTGGAGAACACCGTTGCGCCCGCCGCCCCGTC
ACCGGTGGAAAATGGCACTTCTTCAGCAATCACCGTGGAGGAATATGAAGATTTGGCCTC
TCTAGCCAAGGATGACGAAGCGTCTGTTAGCATCACTGTGGTTGGAGCGTCAGGCGACCT
TGCGAAGAAGAAGATATTTCCTGCCCTTTTTGCTCTTTACTATGAAGGCTGTCTTCCCAA
GGTTTGTCTACTGCTTTGCTCTCTCCAACCTAGGATCCAATGCTACTCTTTTTTTTTTTT
GTAGAAAATCAACTAATCTAGAGTTTTTTTCCTGTAGCATTTCTCCATCTTTGGCTACGC
ACGAAGTAAAATGACAGATGCTGAACTGAGACACATGGTCAGCAAAACACTGACTTGCAG
GATTGATAAAAGGTGCTTAGCTACGAAGATCTTGCAACCATAACTTATGAAGTAAATAAA
TCCTGTGTAGAGAGAATTATTTATGTTGGTGCTGCTTTAACTGTTCTGTCTTTTCTTTCA
GGGAGAACTGTAGTGAGAAAATGGAAGAGTTTCTGAAACGATGCTTCTACCACTCAGGTC
AATATGATTCAGAGGAAGATTTCAGAGAGCTAGGCAAGAAGATCGAACTGCATCAGGTTT
GTATAAGCACTTCAACTTAAACCAAGAATGCATCATTGATTTTACTTCTAATGAGGAGGT
TACAGTTTTCTAGTTGTTTGGGATGAATTCTTCGTAGGACAATTTCTTGCTAGTTCTTTG
TTTCCATCTTGCTAAAATCACAGCGTCGCAAAACTGTCCCTTAATAACTTTGGCACATTG
CATGTACATAGTAAGATGGAAAAATATGATCTAATAAGCCAGCATCTATTAGTTTTACAA
ATCTTAATTATGTGACTTGTAAAAACAAAAATATGCAACTATTTTATACTTAATCCATTC
TGTTAAAAATAACAATTTACTTATATTCCGATAAATTCTTGTTCTTTATATGCAGGGTCC
CAGAGTATCTAACCATCTTTTCTACCTGTCAATACCGCCAAATATATTCCTGGATGTTGT
AAAATGTGCAAGCAAATCAGCATCATCTGCGAGTGGCTGGACAAGGGTAATTGTTGAAAA
ACCCTTTGGCCGGGACTCAGAGTCTTCTGCTGCCCTAACAAGAGGTCTGAAGGAGTTCCT
GGCAGAGGACCAAATCTTCAGGTGATACAGGCATCTAGTTTAATTAGTGAGAATTGTTCA
TGTTCTCTTGTATCACTAATTTAGATATAACTCTCATTCTCATACCCCGTAAATATCAAA
CCAGTCTGCCAATTGAAAAACATATAAGTGGTGATATGATCCCTTGGGAATTCAAGAACA
TGAGATGCATCGTAGTTATTTTCATGGAGTGGGATACTTATGAATGTTTTGCCCCTTTAT
GTTTGTTATGCAGGATTGACCATTACTTGGGAAAGGAGCTGGTGGAGAACTTATCCGTCC
TTCGCTTCTCGAATCTTGTTTTTGAGCCTCTGTGGTCAAGGCAATATATAAGGAATGTGC
AACTGATATTCTCAGAAGACTTTGGCACTGAAGGGCGAGGAGGGTAATGATTTGTTTGTC
TTTATGGCACCATGTTAGTTGCCTTGGATTGTCTCTTACCTTATTGTTGAAATACTCAGG
TACTTTGATAGCTACGGTATTATCCGAGACATAATGCAGAATCATCTTCTTCAGATACTA
GCTCTATTTGCAATGGAAACTCCTATTAGCTTGGAAGCAGAGGACATACGAAATGAGAAG
GTTTGTGCCCGTTCCTTAGTAATATTACTCAAAGGATATAACATATTTTAAGTTACCGAG
ACATGCAGTTTTAACTGAAAAACTGTTGGCGCCTGCTGGGGACAGAGGGATTGTTACTGT
TACATACTTTCAAGCAGCATAGATCCATTTTATAATCTGTGTTTTATGTGAAATAAGCAC
ACTGATTCTGAAATCATCATTCATTGACCTTTTGTGTCACTTTCATGTATTCCTTTCAGG
TTAAAGTTTTGCGCTCCATGAAGCCGTTGCGACTGGAAGATGTGGTAATAGGACAGTATA
AAAGTCATACGAAGGGTGGTATTACGTACCCTGGATACACTGAAGATAAGACGGTGCCCA
AGGGTAGTCTGACTCCAACATTTGCTGCGGCTGCGCTTTTTATAAATAACGCTAGATGGG
ATGGAGTTCCCTTTCTCATGAAGGCTGGAAAAGCTTTGCATACTAAACAGTAAGTGCACT
ACAAAATATTTGTCATTGTCAATATGGTGCCTACACTTGGCCACATGTTCACTTTAGCTA
TCTGTTACTATTTTGTTGAATATTTACCCTGATGTCATTTTTTAAATTGTTTGTGCATGT
TATTTAATTTTTAGCTTATGCAGTTAGACCAACTTATTCTTTATATGTAAGAATGTTATC
ACCTAGTTCATTGGCTATACTCTTAAGATATGAACACAGAATAATTTGACTTGTATTTAT
TAGTATTGATCTTGGGTTGATAACACGAAAGTGTTTGTCTTGAAAACCTTTTTTTGGTTT
ATCTTTTATGCCGCTGATCCTGGCCCATGTTGCAAGTTGCTTAACAATCAAACAAATTTC
AGGGCTGAGATTAGAGTGCAGTTCCGACATGTTCCTGGAAATCTCTACAAGGGATCTTTC
GGAACCGATCTTGACAGGGCTACTAATGAGCTTGTGATACGTGTGCAACCGGACGAAGGA
ATTTACCTAAAGATTAACAACAAGATTCCTGGTCTAGGCATGAGACTAGATAGAAGTAAT
TTGAATCTTCACTATGCAGCAAGGTAAGATGAAGTTTCCAACACTTGTACTTTTTTGCCC
AGAGGGGTTTGTTTATTTAGAAGAATGGATGTATTAGTTCTGACGTTGTACCTAAAATGC
TCCTCTCTTCACGTGTACATAATCAGATAAAAACTGTAGCTCTAGCATTTTCTTCTTTGT
TTTGTTCTCTTTGTTTAGAACTTATAGGCTGCCTTGGTTATTGTAACAATGAGTGCGATG
TGTGGTATGAGATGTCTCTTGGAGATTAAAAATTGGATAAACTTGGACATACAAATTATC
ATTTTTATTAGACATTTACAGTTTATTTTGGTGAAACCGCAAATGGTGCTTGATCAAACT
CCATGAATTGGATAAACTACCCAATTTGAAAGAGTAAATCCATCCAGTTTATTACAGCCC
TTGTTTATAATATGTTCAAATGTTCCCTTTTGAGTCCTTCTGATTCAATTTACTTATGTC
TTTCGAGTGTAGTACCAATTTGCAGCAGCCACTTGGTTGTAATCTCTAAAGTGTTGTTAT
GAACTTTGCCTCAGATACCCGAAGGAGATACCGGATGCCTACGAGAGGCTGTTGCTCGAC
GCGATAGAAGGAGAGCGGAGGCTCTTCATCCGGTCGGACGAGCTGGACGCCGCATGGGAG
CTCTTCACGCCCCTTCTCAAGGAGCTGGAGCAGAAGCGGATGGCCCCCGAGCTGTACCCC
TACGGGAGCCGCGGGCCCGTGGGCGCCCACTACCTGGCAGCAAAGTACAACGTGAGATGG
GGCGACCTGGGCGGCTCGGAACACTAGGAAGAGACCGTGGTTTCACACGGGAGGCGATGA
CTTCTGTTTTTGGCGGCGATTGATTGATTCCGCCGTCGCAATATCTGCAAAGGACCTGCA
CCTTACGTCCAGTTAGTGGGTGTGATGCAGGGAACAGTTCCGAATAAGGGTGAGCGGTCG
ACAATGCTTGTGTTCGTCGATCGACCGTGGATATATATATTTGTTGGTACCACTGGCTTA
CATCTTGTGTGATTCTTAAGAGGCGAAGCCGAGGGCAGAAGGCTCGTTCGTTCATCTTGG
CTGTTCATGGGCGTCATTTGGTTGTCTGGCCGGGCTGGGCCGGGCTGGGCTGGGCTGTTG
TAACGGTACTGCTGATTGTGTAACTGCAAAAGGCTGTTGCTTGTTTACTGCTGCCGGTGT
TCTGTTGGACATGCCCAGGGGTAAGAATCTGAAATCTTGGATAAGTGCTCCCTGTGTCTA
CTTTCATAAGACGTTTTATATAGGTCACCAAAGTAGCCAACAAATAACTGGGTATTATGC
ATGGTTGGTTGGTTGGTACTCCCTCTTGTCTTGAGACGTTTTCTGACACTATATGAGGGA
CTGGCAAATTTGTACAAGACCACTGTGATGTATTCTCCGTTTGGCGTGGTTGGTTGGTAC
TCCCAAAGCAAGTGGTATTATGTGCGTGGTTTTCTCCCGTCAAGTCGGTCAAGACGATGA
CACATGCAGACTGCTGCTATCATCGCCTGACTTGCTCACAGTGAGCCTGGCTAAGAGAAA
ACATGGCCCTTCTTATAAAGCATCTAAAACCAAACCCCTAAAACCCTCTTCAAATGCTCG
GGCCGGCCGGTCATAAAAAAATAATCTAGACGGGTCTTTTAAAACGGTCTTAAACGTTCG
GGCTAACGAGCACCTCACATTTTCAATCTAAATATGTAGCGGATATGAGTGAGCCCGAGC
AAGCCTGCCTGGCCCACACTGGCCCGCATCGATCCCATATATATTCGTCCTCATTTGTTG
GTTGGACCAAATCCTAACCACTTCACTCCCCTCCCTCCATTCTCATCTGACACCCAAGCT
GACCTCCGACGATCTCAGGCCTTCTCCGTCATGGCCTCCTGCGGATTCGACTCTAACCAG
TCTGGATCCGTCGACTCGGGGGTCGCCTCATGCGGAGTGAAGGAGGCAATGGCGGTTCGC
ATTGCACTCCGCCGCTCGCGCGAGGATAGTGCCCGACCGACGGGAGGATCTGTCCGCCAT
AACTCCATAGCATCCGCTCAAAGGGC