morexGenes - Barley RNA-seq Database

Contig contig_1580421

Source Contig contig_1580421

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1580421 (1645 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_1580421

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_18403	1	771 bp	MLOC_18403.1	Available	Available	LOC_Os04g45020.1, FRAME:+1, EVALUE:2e-25, 13104.m04507 protein MYB family transcription factor, putative, expressed

CDS Structure of MLOC_18403

Contig Sequence (1645 bp)

>contig_1580421 1645 assembly3_WGSMorex_rbca.fasta
TCGGGCGCGCCCCGGAGCCCCACGCCAAGCGAGAGCGGCTGCGGCCGCGAACGCAGCGTC
GTTAACCAGCAGCCGTGCAACTCCGGCTCGTCCGGGCCGCCCGAATCGTCGTCGACGGCC
GACGAGTCGAGCAGCCTCACAGTCCCCGGCGCGGCCGTCTCGATCCGGCCGCACGCGCCC
GTGCTCCCCAAGGTCATGTTCGCGGACTGGCTCGACATGGACATGGACATGGACTACGGC
ACCGGCATGATGGCTCCAGCTCCGAGCGCCCTGGACGCGGCCTTCGGCGGCAGCCCGGCG
CAGCAGGCCGTGAGCAACGCGGCGGACTCGTTGCAGGAGCTCGGCGACGGCGGCATCTGC
TGGGGGTTCGACGCGGGCCAGATGCACATGCAGGACGGGGCAGGGTTCTGCGACCTGCTC
TCCATGAGCGAGTTCCTCGGGATCAACTAGGCGGGCGGGAGAGACGGGGGCTTGAACCGC
CGTGATCGATGGAGCGAGCGGCCAAGTGTTGTGCGGCTCGTCGCGGGGTGGGGTGTCAGT
TTGATTCGTTGTTCGGTGCTGTAAATCATCGTGCCGTGTTTGTGCAGTTTTAAACCTTTC
TTTTTTTCCTTTTTGCGGGTAATTGTGCAGTTTTAAACTTTAGCGTGCAAAATAGCATAC
GAAGCGTTGCTTCTTCGTAGAGTTTGTAGCCCCGCTCTGAGTCCCGGAGAACGTGCAGAA
ATAATAACGGAGCACAAGGATTTCATGGTTTCATTTCTGAATGAGAATGCCTCAGGTCAC
AACGAAACTATCATACTCCCTAGGTTCCTAAATACTATAATTCTTTTTAGAGATTTTACT
AGAAGACTACGTACAAATATATACAGATATATTTTACAATGTTAGTTCATTCATTTTGCT
CCGTATGTAGCTCCTAATGAAATCTCTTAAAACACTTATATTTAGGAATGGAGGGAGTAG
TATGTAATACTCCTTCCATTCCTAAATATACTACTCCCTCCATTCCTAAANNNAAGTCTT
TCTAGAGATTTTACTAATGAACTACATGCGGATGTATATANNNNNNNNNNNNNNNNNNNN
NTCACTCATTTTGCTCCGTATGTAGGCATTTAATGAAATATCTTAAAAGATTTATATTTA
GGTACGGAGAGAGTAACATGCATACATGCCAACTAGTCATTTCTGCCGAGGTGTCACACA
ATTAAATAAAGGAAAAAAATAACATTTCAAATGAGGTCTTTATGATACAGAAGCATGATA
TATGTATTATAAATATAGTATTATACACTAATATCATATGCATGATACTAGTAAATGATA
CGTTCCATTACGACCAATCTTATGAAACCTTGAGTTGTTGTTAAGGAATTATTTAGTATT
ATCATTACTTCATCGTGGCCGATGTCTCAGCTGACGTGGCCACCTGGGCCAGCACCCGCC
CAGGGATAAACTTGTCTAGCCACGATTGAGTTCTACCGTAGGTGCATCGTATGTGAATTA
AAAAAAATCTACACGCGGAACATCCAAGAACATGTTACGGAGATGGACCACAGGTCATTA
CCACTAGATGAGCAATGTCGTGCAACGGAAGTAGAGTTGGGGTAGCGCGTCCGCATGGTC
CGTCTCCTCCTCGTCCCATCTCCCT